Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

5679700 .. 5680956

Gene Structure 1257 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG073500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTTATACGTGCCAAAAAGAAATCAGGGAGCATTAGTTCCATGCTGAACGACGATTTGCTTTTCCTAATCCTTAACAAAATCAAGAACAAACGAGATAGAATTGCGTACAAACGAGATAGAGAATCGTTCTCGCTGGTCTGCAAGCAGTGGTTAAGAGTGGAACGTCTGAACCGAACATCACTTTGGGTTCGCCAATCCGTACCCCCGGGTCTAATGACTAGATTCCCAAACTTAGTTTATTTCAGAACACGTGAGCTTACCACGCGAAAGAAAAAGAGAAATAAAAGAGCATGGAAGTATCAGCAGACCGATACCCACCTCGAGGTCATAGCCAAAACCTGTCACGAACTCGAGACCTTCATGGTAAGCTGTGAGAAGCATGATCTACAAAATGATGGTCATTTGGGGCCAAAAGGTCTACAAGCATTGGGAAATGGGTGTCCCAAATTATCCAGACTTATGTTTTGTGGGAGCAAGGTGGTAGGGAATGCTGGAGTTGATGCGCTTTTTCACTCGGCACATAACTTGAAGTCTTTGTATCTGAGTTTTAATGATCTAATATCTGACCCAGCACTTAGAGCAATTGGATCATCTTCCATTAGCGCCTTGGAATTGGTATTTTGTGATAAAATTACTGATGTAGGATTAGGGTTTTTGGCAAATGGTTCTACCTCAAAAACCATCAAGAAATTGGTCCTTGTGGGGTGCCCTCTTATCACTGATATTGGAGGTGTGGCAATTTCTGCAATTCAAACCCTCAAGGTATTGAGATTGAATGATGTGGACGTGTCAGACCATACCATGGTCGCTCTTGCCAAGAATTGCAGCAAAATAGAAATACTTGATTTAGAGTATTGTGAAAGGGTAACCGGAGCTGGCATTCGTGCATTTTCAAGTCATAAGTGCTTGAAGCTCCTTGCATTGTTTGGTTTAAGCGGCTTGTATCAATCTGATATGGAATGCATAGCGCTTGGATGCCCGTCATTGGAGTCTGTTGTTACAGACAACTTGTTAACTAGGGGTTTTGAATTGATGCAAGAGAACACTAGAAGAGTGGTTAAATTCAAAAGCTCCTATAATCTTCCTCTTCCCCGTTTCAGCACCACCTCGTGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

373

Amino Acids

41.77

Weight (kDa)

9.53

Isoelectric Point (pI)

33.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	36 - 60	2.6e-06	F-box
DUF7885	PF25372	86 - 301	3.7e-19	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	708
AccB7I	CCANNNNNTGG	2 cut(s)	805, 1113
AccI	GTMKAC	1 cut(s)	421
AccII	CGCG	1 cut(s)	268
AciI	CCGC	1 cut(s)	939
AclWI	GGATC	1 cut(s)	598
AcsI	RAATTY	1 cut(s)	1064
AcvI	CACGTG	1 cut(s)	254
AdeI	CACNNNGTG	1 cut(s)	1113
AfaI	GTAC	2 cut(s)	110, 204
AfeI	AGCGCT	1 cut(s)	972
AfiI	CCNNNNNNNGG	4 cut(s)	325, 805, 988, 1113
AflIII	ACRYGT	2 cut(s)	251, 789
AgsI	TTSAA	7 cut(s)	532, 755, 778, 897, 913, 1031, 1069
AjiI	CACGTC	1 cut(s)	790
AjuI	GAANNNNNNNTTGG	2 cut(s)	169, 201
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	5 cut(s)	259, 372, 878, 916, 1074
AluI	AGCT	5 cut(s)	259, 372, 878, 916, 1074
Alw26I	GTCTC	1 cut(s)	350
AlwI	GGATC	1 cut(s)	598
Ama87I	CYCGRG	3 cut(s)	208, 323, 353
Aor51HI	AGCGCT	1 cut(s)	972
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	1 cut(s)	828
ApoI	RAATTY	1 cut(s)	1064
ArsI	GACNNNNNNTTYG	4 cut(s)	385, 417, 450, 482
AspLEI	GCGC	3 cut(s)	508, 608, 973
AspS9I	GGNCC	2 cut(s)	410, 697
AsuC2I	CCSGG	2 cut(s)	209, 210
AvaI	CYCGRG	3 cut(s)	208, 323, 353
AvaII	GGWCC	1 cut(s)	697
BaeGI	GKGCMC	1 cut(s)	713
BanI	GGYRCC	1 cut(s)	708
BauI	CACGAG	1 cut(s)	1111
BbrPI	CACGTG	1 cut(s)	254
BbvI	GCAGC	1 cut(s)	840
BccI	CCATC	2 cut(s)	392, 692
BcnI	CCSGG	2 cut(s)	209, 210
BcoDI	GTCTC	1 cut(s)	350
BfaI	CTAG	3 cut(s)	222, 1020, 1050
BfoI	RGCGCY	2 cut(s)	609, 974
BisI	GCNGC	2 cut(s)	829, 940
BlsI	GCNGC	2 cut(s)	830, 941
Bme1390I	CCNGG	2 cut(s)	209, 210
Bme18I	GGWCC	1 cut(s)	697
BmeT110I	CYCGRG	3 cut(s)	208, 323, 353
BmgBI	CACGTC	1 cut(s)	790
BmgT120I	GGNCC	2 cut(s)	410, 697
BmiI	GGNNCC	2 cut(s)	411, 710
BmrFI	CCNGG	2 cut(s)	209, 210
BmsI	GCATC	3 cut(s)	493, 968, 1026
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	746
BpuMI	CCSGG	2 cut(s)	209, 210
BsaAI	YACGTR	2 cut(s)	11, 254
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	207, 208, 609, 804
BsaWI	WCCGGW	1 cut(s)	872
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	325, 805, 988, 1113
BseDI	CCNNGG	4 cut(s)	207, 208, 609, 804
BseGI	GGATG	1 cut(s)	983
BseLI	CCNNNNNNNGG	4 cut(s)	325, 805, 988, 1113
BseMII	CTCAG	1 cut(s)	536
BseSI	GKGCMC	1 cut(s)	713
BseXI	GCAGC	1 cut(s)	840
BseYI	CCCAGC	1 cut(s)	571
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	412
BshNI	GGYRCC	1 cut(s)	708
BsiHKCI	CYCGRG	3 cut(s)	208, 323, 353
BsiSI	CCGG	2 cut(s)	209, 873
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	4 cut(s)	325, 805, 988, 1113
BsmAI	GTCTC	1 cut(s)	350
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	3 cut(s)	496, 882, 968
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	3 cut(s)	208, 323, 353
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	3 cut(s)	385, 556, 590
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	1 cut(s)	939
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	411, 710
BspPI	GGATC	1 cut(s)	598
BspT107I	GGYRCC	1 cut(s)	708
BspTNI	GGTCTC	1 cut(s)	350
BssECI	CCNNGG	4 cut(s)	207, 208, 609, 804
BssMI	GATC	3 cut(s)	385, 556, 590
BssSI	CACGAG	1 cut(s)	1111
BssT1I	CCWWGG	2 cut(s)	609, 804
Bst2BI	CACGAG	1 cut(s)	1111
Bst6I	CTCTTC	2 cut(s)	1048, 1095
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstBAI	YACGTR	2 cut(s)	11, 254
BstC8I	GCNNGC	2 cut(s)	146, 880
BstDEI	CTNAG	3 cut(s)	235, 545, 578
BstDSI	CCRYGG	1 cut(s)	804
BstEII	GGTNACC	1 cut(s)	868
BstF5I	GGATG	1 cut(s)	983
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	2 cut(s)	609, 974
BstHHI	GCGC	3 cut(s)	508, 608, 973
BstKTI	GATC	3 cut(s)	388, 559, 593
BstMAI	GTCTC	1 cut(s)	350
BstMBI	GATC	3 cut(s)	385, 556, 590
BstMWI	GCNNNNNNNGC	3 cut(s)	265, 581, 746
BstPI	GGTNACC	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	207, 208
BstSLI	GKGCMC	1 cut(s)	713
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	840
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	1 cut(s)	804
BtrI	CACGTC	1 cut(s)	790
BtsCI	GGATG	1 cut(s)	983
BtsI	GCAGTG	1 cut(s)	155
BtsIMutI	CAGTG	2 cut(s)	155, 720
Cac8I	GCNNGC	2 cut(s)	146, 880
CfoI	GCGC	3 cut(s)	508, 608, 973
Cfr13I	GGNCC	2 cut(s)	410, 697
Cfr9I	CCCGGG	1 cut(s)	208
Csp6I	GTAC	2 cut(s)	109, 203
CviAII	CATG	5 cut(s)	43, 294, 364, 383, 805
CviJI	RGCY	8 cut(s)	259, 335, 372, 412, 878, 916, 942, 1074
CviKI_1	RGCY	8 cut(s)	259, 335, 372, 412, 878, 916, 942, 1074
CviQI	GTAC	2 cut(s)	109, 203
DdeI	CTNAG	3 cut(s)	235, 545, 578
DpnI	GATC	3 cut(s)	387, 558, 592
DpnII	GATC	3 cut(s)	385, 556, 590
DraIII	CACNNNGTG	1 cut(s)	1113
Eam1104I	CTCTTC	2 cut(s)	1048, 1095
EarI	CTCTTC	2 cut(s)	1048, 1095
Eco130I	CCWWGG	2 cut(s)	609, 804
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	697
Eco47III	AGCGCT	1 cut(s)	972
Eco72I	CACGTG	1 cut(s)	254
Eco88I	CYCGRG	3 cut(s)	208, 323, 353
Eco91I	GGTNACC	1 cut(s)	868
EcoO65I	GGTNACC	1 cut(s)	868
EcoT14I	CCWWGG	2 cut(s)	609, 804
EcoT22I	ATGCAT	1 cut(s)	968
ErhI	CCWWGG	2 cut(s)	609, 804
FaeI	CATG	5 cut(s)	46, 297, 367, 386, 808
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	5 cut(s)	42, 293, 363, 382, 804
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	2 cut(s)	829, 940
FokI	GGATG	1 cut(s)	990
Fsp4HI	GCNGC	2 cut(s)	829, 940
FspBI	CTAG	3 cut(s)	222, 1020, 1050
GlaI	GCGC	3 cut(s)	507, 607, 972
GluI	GCNGC	2 cut(s)	829, 940
GsaI	CCCAGC	1 cut(s)	575
GsuI	CTGGAG	1 cut(s)	516
HaeII	RGCGCY	2 cut(s)	609, 974
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	2 cut(s)	209, 873
HhaI	GCGC	3 cut(s)	508, 608, 973
Hin1II	CATG	5 cut(s)	46, 297, 367, 386, 808
Hin6I	GCGC	3 cut(s)	506, 606, 971
HinP1I	GCGC	3 cut(s)	506, 606, 971
HincII	GTYRAC	1 cut(s)	1017
HindII	GTYRAC	1 cut(s)	1017
HinfI	GANTC	3 cut(s)	125, 225, 992
HpaI	GTTAAC	1 cut(s)	1017
HpaII	CCGG	2 cut(s)	209, 873
Hpy166II	GTNNAC	3 cut(s)	422, 787, 1017
Hpy188I	TCNGA	6 cut(s)	171, 248, 546, 568, 796, 955
Hpy188III	TCNNGA	5 cut(s)	85, 347, 355, 456, 688
Hpy8I	GTNNAC	3 cut(s)	422, 787, 1017
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	370
HpyCH4IV	ACGT	4 cut(s)	10, 166, 253, 789
HpyCH4V	TGCA	7 cut(s)	144, 749, 828, 890, 923, 966, 1039
HpyF10VI	GCNNNNNNNGC	3 cut(s)	265, 581, 746
HpyF3I	CTNAG	3 cut(s)	235, 545, 578
HpySE526I	ACGT	4 cut(s)	10, 166, 253, 789
Hsp92II	CATG	5 cut(s)	46, 297, 367, 386, 808
HspAI	GCGC	3 cut(s)	506, 606, 971
KspAI	GTTAAC	1 cut(s)	1017
Kzo9I	GATC	3 cut(s)	385, 556, 590
LmnI	GCTCC	5 cut(s)	30, 474, 875, 921, 1079
LpnPI	CCDG	9 cut(s)	12, 122, 222, 355, 469, 480, 585, 864, 886
Lsp1109I	GCAGC	1 cut(s)	840
LweI	GCATC	3 cut(s)	493, 968, 1026
MaeI	CTAG	3 cut(s)	222, 1020, 1050
MaeII	ACGT	4 cut(s)	10, 166, 253, 789
MaeIII	GTNAC	3 cut(s)	344, 868, 1000
MalI	GATC	3 cut(s)	387, 558, 592
MboI	GATC	3 cut(s)	385, 556, 590
MboII	GAAGA	4 cut(s)	588, 1065, 1076, 1082
MfeI	CAATTG	1 cut(s)	585
MhlI	GDGCHC	1 cut(s)	713
MlyI	GAGTC	1 cut(s)	1001
MnlI	CCTC	8 cut(s)	319, 332, 685, 723, 725, 770, 1098, 1120
Mph1103I	ATGCAT	1 cut(s)	968
MseI	TTAA	6 cut(s)	75, 155, 552, 935, 1016, 1062
MspI	CCGG	2 cut(s)	209, 873
MspR9I	CCNGG	2 cut(s)	209, 210
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	3 cut(s)	496, 882, 968
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	265, 581, 746
NciI	CCSGG	2 cut(s)	209, 210
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	385, 556, 590
NlaIII	CATG	5 cut(s)	46, 297, 367, 386, 808
NlaIV	GGNNCC	2 cut(s)	411, 710
NmeAIII	GCCGAG	1 cut(s)	497
NmuCI	GTSAC	1 cut(s)	344
NsiI	ATGCAT	1 cut(s)	968
PaeR7I	CTCGAG	2 cut(s)	323, 353
PcsI	WCGNNNNNNNCGW	1 cut(s)	172
PctI	GAATGC	3 cut(s)	496, 882, 968
PfeI	GAWTC	2 cut(s)	125, 225
PflMI	CCANNNNNTGG	2 cut(s)	805, 1113
PkrI	GCNGC	2 cut(s)	830, 941
PleI	GAGTC	1 cut(s)	1000
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	1000
Ppu21I	YACGTR	2 cut(s)	11, 254
PspCI	CACGTG	1 cut(s)	254
PspEI	GGTNACC	1 cut(s)	868
PspFI	CCCAGC	1 cut(s)	571
PspN4I	GGNNCC	2 cut(s)	411, 710
PspPI	GGNCC	2 cut(s)	410, 697
PspXI	VCTCGAGB	1 cut(s)	323
RsaI	GTAC	2 cut(s)	110, 204
RsaNI	GTAC	2 cut(s)	109, 203
SaqAI	TTAA	6 cut(s)	75, 155, 552, 935, 1016, 1062
SatI	GCNGC	2 cut(s)	829, 940
Sau3AI	GATC	3 cut(s)	385, 556, 590
Sau96I	GGNCC	2 cut(s)	410, 697
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	2 cut(s)	209, 210
SduI	GDGCHC	1 cut(s)	713
SfaNI	GCATC	3 cut(s)	493, 968, 1026
Sfr274I	CTCGAG	2 cut(s)	323, 353
SinI	GGWCC	1 cut(s)	697
SlaI	CTCGAG	2 cut(s)	323, 353
SmaI	CCCGGG	1 cut(s)	210
SmlI	CTYRAG	3 cut(s)	323, 353, 761
SmoI	CTYRAG	3 cut(s)	323, 353, 761
SsiI	CCGC	1 cut(s)	939
SspMI	CTAG	3 cut(s)	222, 1020, 1050
StyD4I	CCNGG	2 cut(s)	207, 208
StyI	CCWWGG	2 cut(s)	609, 804
TaiI	ACGT	4 cut(s)	13, 169, 256, 792
TaqI	TCGA	2 cut(s)	324, 354
TaqII	GACCGA	1 cut(s)	326
TauI	GCSGC	1 cut(s)	942
TfiI	GAWTC	2 cut(s)	125, 225
Tru1I	TTAA	6 cut(s)	75, 155, 552, 935, 1016, 1062
Tru9I	TTAA	6 cut(s)	75, 155, 552, 935, 1016, 1062
TscAI	CASTG	2 cut(s)	155, 727
TseFI	GTSAC	1 cut(s)	344
TseI	GCWGC	1 cut(s)	828
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	1 cut(s)	352
TspGWI	ACGGA	1 cut(s)	190
TspMI	CCCGGG	1 cut(s)	208
TspRI	CASTG	2 cut(s)	155, 727
Van91I	CCANNNNNTGG	2 cut(s)	805, 1113
VpaK11BI	GGWCC	1 cut(s)	697
XapI	RAATTY	1 cut(s)	1064
XcmI	CCANNNNNNNNNTGG	2 cut(s)	607, 691
XhoI	CTCGAG	2 cut(s)	323, 353
XmaI	CCCGGG	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	421
XspI	CTAG	3 cut(s)	222, 1020, 1050
Zsp2I	ATGCAT	1 cut(s)	968

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.