FvH4_5g12240

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008126
Physical Location & Seq
Reverse (-)
6883229 .. 6884413
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12240.t1

Sequence Viewer

Length: 1065 bp
ATGGCTATACGCGCCAAAAAGAAATCAAGGAGAATTAAAACCATGCTAAACGACGATGCACTTGGCCTGATCCTTCACAAAATCAAGTGCAGAAAAGATAAAGCGTCGTTCTCGGAGCTTACCGCACGAAGAAAGAAGAAAAATAAACAAGCATGGTATTATCCTCGGGGCGACACCCGCCTCAACTTGATAGCCAAAGCATGTCCCGATCTCAAGACTTTGATGGTTGGCTATGATGACAAAGAACAGGTCCATGATGATGGTCTTTTGGGGCCAAAAGGTCTGCATGCTTTGGCAACTGGTTGCCCCAAATTGTCTATGCTTGTGTTATGTGGGAGAAAGGTGGTGGGGAATCCTGCAGTTGATGCTCTCTGTCACTCAGCACATAATTTGAAGGCATTGTGTTTGCAAAATGTTAAGCTCATCTCTGATCAAGCACTAAGAGCAATCGGGTCATCTTCCATAAGAACCTTGGAGTTGGTAAGTTGTGATAATGTTACTGATGTGGGATTGGGGTTTTTGGCTACCTCAAAAACTCTCAAGAAATTGGTCATCGATGGTTGCCGTAAAATCACTGAAACCGGGCTTGTGCTATTACGCAACATGTGTAGCTTGGAGCACCTGGCGTTGTCATGGAGTCGGTTAACCGATGCTGGAGTCATGGCCATTTCTGAAATTCGAACCCTCAAGGAACTGAGACTGTGTCCTATTGATAGGTTGGACCTGTCAGACCGCACCATGGTCGCTCTTGCCGAGAATTGCAGCAGATTGGAGACACTTGATTTACATTCTTGTAGGGTAACCGGAGCTGGCATTCGTGCATTTTCAGGTCATAAATGCTTGAAGTTTCTTTCAGTAATGTATAGGTCATCAGTGAACTTTGATCAATCTGATGTGGAACGCTTAGCGCTTGGATGCCCATCATTGAAGTGTGTTGTATTAGATGAGTCGTTAGAAAGGAGTTTTGAATCGATGCACGAGAACGCCAAATCAATCATGAAATTTTTATACTTCTCTAATATTCTTCCTCCTTTCAGCACCGGATTTTGGAGTACTTCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

355

Amino Acids

39.26

Weight (kDa)

9.36

Isoelectric Point (pI)

37.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 94 - 225 3.6e-12 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 12
AciI CCGC 3 cut(s) 123, 178, 733
AclWI GGATC 1 cut(s) 64
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 2 cut(s) 675, 1001
AfaI GTAC 1 cut(s) 1054
AfeI AGCGCT 1 cut(s) 909
AfiI CCNNNNNNNGG 2 cut(s) 739, 1047
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 4 cut(s) 394, 844, 928, 968
AjnI CCWGG 1 cut(s) 621
AluBI AGCT 4 cut(s) 118, 421, 612, 809
AluI AGCT 4 cut(s) 118, 421, 612, 809
Alw21I GWGCWC 1 cut(s) 621
Alw26I GTCTC 2 cut(s) 691, 767
AlwI GGATC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 165
Aor51HI AGCGCT 1 cut(s) 909
AoxI GGCC 3 cut(s) 64, 272, 663
ApeKI GCWGC 1 cut(s) 762
ApoI RAATTY 2 cut(s) 675, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 234, 266
AspLEI GCGC 2 cut(s) 14, 910
AspS9I GGNCC 3 cut(s) 250, 272, 721
AsuC2I CCSGG 1 cut(s) 583
AsuHPI GGTGA 1 cut(s) 1050
AsuII TTCGAA 1 cut(s) 679
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 2 cut(s) 250, 721
BalI TGGCCA 1 cut(s) 665
BauI CACGAG 1 cut(s) 977
Bbv12I GWGCWC 1 cut(s) 621
BbvI GCAGC 1 cut(s) 774
BccI CCATC 4 cut(s) 217, 254, 551, 928
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 724, 758
BciT130I CCWGG 1 cut(s) 623
BclI TGATCA 2 cut(s) 430, 883
BcnI CCSGG 1 cut(s) 583
BcoDI GTCTC 2 cut(s) 691, 767
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 911
BisI GCNGC 1 cut(s) 763
BlpI GCTNAGC 1 cut(s) 904
BlsI GCNGC 1 cut(s) 764
BmcAI AGTACT 1 cut(s) 1054
Bme1390I CCNGG 2 cut(s) 583, 623
Bme18I GGWCC 2 cut(s) 250, 721
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 3 cut(s) 250, 272, 721
BmiI GGNNCC 1 cut(s) 273
BmrFI CCNGG 2 cut(s) 583, 623
BmsI GCATC 5 cut(s) 46, 355, 640, 905, 963
BpmI CTGGAG 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 904
Bpu14I TTCGAA 1 cut(s) 679
BpuEI CTTGAG 3 cut(s) 197, 524, 671
BpuMI CCSGG 1 cut(s) 583
Bsa29I ATCGAT 2 cut(s) 555, 971
BsaBI GATNNNNATC 1 cut(s) 919
BsaJI CCNNGG 3 cut(s) 164, 471, 738
BsaWI WCCGGW 2 cut(s) 803, 1040
Bsc4I CCNNNNNNNGG 2 cut(s) 739, 1047
Bse1I ACTGG 1 cut(s) 304
Bse8I GATNNNNATC 1 cut(s) 919
BseBI CCWGG 1 cut(s) 623
BseCI ATCGAT 2 cut(s) 555, 971
BseDI CCNNGG 3 cut(s) 164, 471, 738
BseGI GGATG 1 cut(s) 920
BseJI GATNNNNATC 1 cut(s) 919
BseLI CCNNNNNNNGG 2 cut(s) 739, 1047
BseMII CTCAG 2 cut(s) 393, 686
BseNI ACTGG 1 cut(s) 304
BseXI GCAGC 1 cut(s) 774
BsgI GTGCAG 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 3 cut(s) 66, 274, 665
BshVI ATCGAT 2 cut(s) 555, 971
BsiHKAI GWGCWC 1 cut(s) 621
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 3 cut(s) 582, 804, 1041
BslFI GGGAC 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 739, 1047
BsmAI GTCTC 2 cut(s) 691, 767
BsmFI GGGAC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 813
BsnI GGCC 3 cut(s) 66, 274, 665
BsoBI CYCGRG 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 679
Bsp1286I GDGCHC 1 cut(s) 621
Bsp143I GATC 4 cut(s) 69, 208, 430, 883
Bsp1720I GCTNAGC 1 cut(s) 904
Bsp19I CCATGG 1 cut(s) 738
BspACI CCGC 3 cut(s) 123, 178, 733
BspANI GGCC 3 cut(s) 66, 274, 665
BspCNI CTCAG 2 cut(s) 392, 687
BspDI ATCGAT 2 cut(s) 555, 971
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 996
BspLI GGNNCC 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 361
BspPI GGATC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 679
BsrI ACTGG 1 cut(s) 304
BssECI CCNNGG 3 cut(s) 164, 471, 738
BssMI GATC 4 cut(s) 69, 208, 430, 883
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 2 cut(s) 471, 738
Bst2BI CACGAG 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 623
Bst4CI ACNGT 1 cut(s) 702
BstAPI GCANNNNNTGC 1 cut(s) 365
BstBI TTCGAA 1 cut(s) 679
BstC8I GCNNGC 2 cut(s) 288, 811
BstDEI CTNAG 4 cut(s) 379, 440, 695, 904
BstDSI CCRYGG 1 cut(s) 738
BstEII GGTNACC 1 cut(s) 799
BstF5I GGATG 1 cut(s) 920
BstFNI CGCG 1 cut(s) 12
BstH2I RGCGCY 1 cut(s) 911
BstHHI GCGC 2 cut(s) 14, 910
BstKTI GATC 4 cut(s) 72, 211, 433, 886
BstMAI GTCTC 2 cut(s) 691, 767
BstMBI GATC 4 cut(s) 69, 208, 430, 883
BstMWI GCNNNNNNNGC 4 cut(s) 11, 177, 365, 443
BstNI CCWGG 1 cut(s) 623
BstNSI RCATGY 3 cut(s) 204, 290, 607
BstPI GGTNACC 1 cut(s) 799
BstSCI CCNGG 2 cut(s) 581, 621
BstSFI CTRYAG 1 cut(s) 357
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 774
BstXI CCANNNNNNTGG 1 cut(s) 260
Bsu15I ATCGAT 2 cut(s) 555, 971
BsuRI GGCC 3 cut(s) 66, 274, 665
BsuTUI ATCGAT 2 cut(s) 555, 971
BtgI CCRYGG 1 cut(s) 738
BtsCI GGATG 1 cut(s) 920
BtsIMutI CAGTG 2 cut(s) 573, 879
Cac8I GCNNGC 2 cut(s) 288, 811
CciI TCATGA 1 cut(s) 996
CfoI GCGC 2 cut(s) 14, 910
Cfr13I GGNCC 3 cut(s) 250, 272, 721
ClaI ATCGAT 2 cut(s) 555, 971
CseI GACGC 1 cut(s) 93
Csp6I GTAC 1 cut(s) 1053
CviQI GTAC 1 cut(s) 1053
DdeI CTNAG 4 cut(s) 379, 440, 695, 904
DpnI GATC 4 cut(s) 71, 210, 432, 885
DpnII GATC 4 cut(s) 69, 208, 430, 883
EaeI YGGCCR 1 cut(s) 663
Eco130I CCWWGG 2 cut(s) 471, 738
Eco47I GGWCC 2 cut(s) 250, 721
Eco47III AGCGCT 1 cut(s) 909
Eco88I CYCGRG 1 cut(s) 165
Eco91I GGTNACC 1 cut(s) 799
EcoO65I GGTNACC 1 cut(s) 799
EcoRII CCWGG 1 cut(s) 621
EcoT14I CCWWGG 2 cut(s) 471, 738
ErhI CCWWGG 2 cut(s) 471, 738
FaqI GGGAC 1 cut(s) 189
FauI CCCGC 1 cut(s) 185
FbaI TGATCA 2 cut(s) 430, 883
Fnu4HI GCNGC 1 cut(s) 763
FokI GGATG 1 cut(s) 927
Fsp4HI GCNGC 1 cut(s) 763
GlaI GCGC 2 cut(s) 13, 909
GluI GCNGC 1 cut(s) 763
GsuI CTGGAG 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 911
HaeIII GGCC 3 cut(s) 66, 274, 665
HapII CCGG 3 cut(s) 582, 804, 1041
HgaI GACGC 1 cut(s) 93
HhaI GCGC 2 cut(s) 14, 910
Hin6I GCGC 2 cut(s) 12, 908
HinP1I GCGC 2 cut(s) 12, 908
HincII GTYRAC 1 cut(s) 645
HindII GTYRAC 1 cut(s) 645
HinfI GANTC 5 cut(s) 352, 637, 657, 947, 968
HpaI GTTAAC 1 cut(s) 645
HpaII CCGG 3 cut(s) 582, 804, 1041
HphI GGTGA 1 cut(s) 1050
Hpy166II GTNNAC 2 cut(s) 645, 877
Hpy188I TCNGA 5 cut(s) 115, 430, 673, 730, 892
Hpy188III TCNNGA 4 cut(s) 206, 214, 541, 997
Hpy8I GTNNAC 2 cut(s) 645, 877
Hpy99I CGWCG 2 cut(s) 56, 109
HpyAV CCTTC 2 cut(s) 83, 388
HpyCH4III ACNGT 1 cut(s) 702
HpyCH4V TGCA 8 cut(s) 59, 90, 286, 359, 409, 762, 821, 976
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 177, 365, 443
HpyF3I CTNAG 4 cut(s) 379, 440, 695, 904
HspAI GCGC 2 cut(s) 12, 908
Ksp22I TGATCA 2 cut(s) 430, 883
KspAI GTTAAC 1 cut(s) 645
Kzo9I GATC 4 cut(s) 69, 208, 430, 883
LmnI GCTCC 3 cut(s) 115, 616, 806
Lsp1109I GCAGC 1 cut(s) 774
LweI GCATC 5 cut(s) 46, 355, 640, 905, 963
MaeIII GTNAC 3 cut(s) 374, 496, 799
MalI GATC 4 cut(s) 71, 210, 432, 885
MboI GATC 4 cut(s) 69, 208, 430, 883
MboII GAAGA 4 cut(s) 141, 148, 450, 1016
MhlI GDGCHC 1 cut(s) 621
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 7 cut(s) 33, 311, 388, 545, 675, 757, 1001
MluNI TGGCCA 1 cut(s) 665
MlyI GAGTC 3 cut(s) 646, 666, 956
MmeI TCCRAC 1 cut(s) 699
MnlI CCTC 5 cut(s) 174, 191, 538, 695, 1038
Mox20I TGGCCA 1 cut(s) 665
MscI TGGCCA 1 cut(s) 665
MseI TTAA 3 cut(s) 36, 417, 644
MslI CAYNNNNRTG 2 cut(s) 258, 928
Msp20I TGGCCA 1 cut(s) 665
MspI CCGG 3 cut(s) 582, 804, 1041
MspR9I CCNGG 2 cut(s) 583, 623
Mva1269I GAATGC 1 cut(s) 813
MvaI CCWGG 1 cut(s) 623
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 4 cut(s) 11, 177, 365, 443
NciI CCSGG 1 cut(s) 583
NcoI CCATGG 1 cut(s) 738
NdeII GATC 4 cut(s) 69, 208, 430, 883
NlaIV GGNNCC 1 cut(s) 273
NmeAIII GCCGAG 1 cut(s) 778
NmuCI GTSAC 1 cut(s) 374
NspI RCATGY 3 cut(s) 204, 290, 607
NspV TTCGAA 1 cut(s) 679
PaeI GCATGC 1 cut(s) 290
PagI TCATGA 1 cut(s) 996
PciI ACATGT 1 cut(s) 603
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PctI GAATGC 1 cut(s) 813
PfeI GAWTC 2 cut(s) 352, 968
PflFI GACNNNGTC 1 cut(s) 702
PkrI GCNGC 1 cut(s) 764
PleI GAGTC 3 cut(s) 645, 665, 955
PpsI GAGTC 3 cut(s) 645, 665, 955
PscI ACATGT 1 cut(s) 603
Psp6I CCWGG 1 cut(s) 621
PspEI GGTNACC 1 cut(s) 799
PspGI CCWGG 1 cut(s) 621
PspN4I GGNNCC 1 cut(s) 273
PspPI GGNCC 3 cut(s) 250, 272, 721
PstI CTGCAG 1 cut(s) 361
PsyI GACNNNGTC 1 cut(s) 702
RsaI GTAC 1 cut(s) 1054
RsaNI GTAC 1 cut(s) 1053
RseI CAYNNNNRTG 2 cut(s) 258, 928
SaqAI TTAA 3 cut(s) 36, 417, 644
SatI GCNGC 1 cut(s) 763
Sau3AI GATC 4 cut(s) 69, 208, 430, 883
Sau96I GGNCC 3 cut(s) 250, 272, 721
ScaI AGTACT 1 cut(s) 1054
SchI GAGTC 3 cut(s) 646, 666, 956
ScrFI CCNGG 2 cut(s) 583, 623
SduI GDGCHC 1 cut(s) 621
SfaNI GCATC 5 cut(s) 46, 355, 640, 905, 963
SfcI CTRYAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 679
SinI GGWCC 2 cut(s) 250, 721
SmiMI CAYNNNNRTG 2 cut(s) 258, 928
SmlI CTYRAG 3 cut(s) 212, 539, 686
SmoI CTYRAG 3 cut(s) 212, 539, 686
SphI GCATGC 1 cut(s) 290
Sse9I AATT 7 cut(s) 33, 311, 388, 545, 675, 757, 1001
SsiI CCGC 3 cut(s) 123, 178, 733
SspI AATATT 1 cut(s) 1021
StyD4I CCNGG 2 cut(s) 581, 621
StyI CCWWGG 2 cut(s) 471, 738
TaaI ACNGT 1 cut(s) 702
TaqI TCGA 3 cut(s) 555, 679, 971
TasI AATT 7 cut(s) 33, 311, 388, 545, 675, 757, 1001
TatI WGTACW 1 cut(s) 1052
TfiI GAWTC 2 cut(s) 352, 968
Tru1I TTAA 3 cut(s) 36, 417, 644
Tru9I TTAA 3 cut(s) 36, 417, 644
TscAI CASTG 2 cut(s) 580, 879
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 1 cut(s) 762
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 1 cut(s) 1013
TspRI CASTG 2 cut(s) 580, 879
Tth111I GACNNNGTC 1 cut(s) 702
VpaK11BI GGWCC 2 cut(s) 250, 721
XapI RAATTY 2 cut(s) 675, 1001
XceI RCATGY 3 cut(s) 204, 290, 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
ZrmI AGTACT 1 cut(s) 1054
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.