FvH4_5g12191

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008126
Physical Location & Seq
Forward (+)
6864121 .. 6865306
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12191.t1

Sequence Viewer

Length: 771 bp
ATGCTGAACGACGATTTACTTGGCCTGATCCTTGACAAAATCAAGCACAGAAAAGGTAGAGGCTCGTTCTCGCGTTCTCGCAGAACAAGGAGGCTTACCGCACTAAGAAAGAAGACAAATGAAAACGCTTGGTATTCTCCACGCGTACGGGGCGATGACCGCCTCATCTCGATAGCCAAAGCATGTCCCAAACTCGAGACTTTGATGGTTGGCTATGATAACTTCAAAGAACAGGTCCATAAAGATGGCCTTTTGGGGCCAACAGGTATGAATGCTTTGGCAAATGGGTGTCCCAAATTGTCTACGCTTCTGTTTTGTGGAGGAAAGGTGGTGGGAAATCCTGCAGTTGATGAGCTTTGTCACTCAGCACATAATTTAAAGGCTTTGTGTTTCCGTGACATTGAGCTAATTTCTGACCAAACACTGAGCAATTGGGTCGTCTTCCATAAGCACCTTGGAAATTGCCATAAAATCACTGAAACCGGGGTCGAGCTATTACGCAACATGTGTAGCTTGGAGCACCTGGCATTGTCACGTTCGGTGTGGAGTGAGTGCACTGATACTGGAGTCGTGGCAATTTCCGCAATTCGAACCCTAAAGGAATTGAGATTGACTAATATTCATATTATGGACCTATCAGACCATATCATGGTTGCTCTTGCCGAGAATTGTAGCAAATTAGAAACACTTGATTTAGAGCAATGTAGGGTAACTGGAGCTGGTATTCATGCATTTTCAGGTCATAAATGCTTGAAGCATCTTTCAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_6

Protein Analysis

257

Amino Acids

28.49

Weight (kDa)

8.97

Isoelectric Point (pI)

36.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 89 - 243 2.7e-06 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 649
AccI GTMKAC 1 cut(s) 302
AccII CGCG 2 cut(s) 73, 144
AciI CCGC 3 cut(s) 99, 160, 582
AclWI GGATC 1 cut(s) 22
AfaI GTAC 1 cut(s) 147
AfiI CCNNNNNNNGG 1 cut(s) 649
AflIII ACRYGT 2 cut(s) 142, 504
AgsI TTSAA 2 cut(s) 226, 754
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 355, 406, 493, 513, 719
AluI AGCT 5 cut(s) 355, 406, 493, 513, 719
Alw21I GWGCWC 2 cut(s) 522, 557
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 553
AlwI GGATC 1 cut(s) 22
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 3 cut(s) 22, 247, 257
ApaLI GTGCAC 1 cut(s) 553
ArsI GACNNNNNNTTYG 2 cut(s) 219, 251
AspS9I GGNCC 3 cut(s) 235, 257, 631
AsuC2I CCSGG 1 cut(s) 484
AsuII TTCGAA 1 cut(s) 589
AvaI CYCGRG 1 cut(s) 194
AvaII GGWCC 2 cut(s) 235, 631
BaeGI GKGCMC 1 cut(s) 557
BaeI ACNNNNGTAYC 2 cut(s) 552, 585
BbsI GAAGAC 2 cut(s) 119, 433
Bbv12I GWGCWC 2 cut(s) 522, 557
BccI CCATC 2 cut(s) 199, 239
BcgI CGANNNNNNTGC 2 cut(s) 418, 452
BciT130I CCWGG 1 cut(s) 524
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 1 cut(s) 191
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 484, 524
Bme18I GGWCC 2 cut(s) 235, 631
BmeT110I CYCGRG 1 cut(s) 194
BmgT120I GGNCC 3 cut(s) 235, 257, 631
BmiI GGNNCC 1 cut(s) 258
BmrFI CCNGG 2 cut(s) 484, 524
BmsI GCATC 1 cut(s) 766
BpiI GAAGAC 2 cut(s) 119, 433
BpmI CTGGAG 2 cut(s) 585, 735
Bpu14I TTCGAA 1 cut(s) 589
BpuMI CCSGG 1 cut(s) 484
BsaJI CCNNGG 2 cut(s) 454, 483
BsaXI ACNNNNNCTCC 2 cut(s) 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 2 cut(s) 568, 718
Bse3DI GCAATG 1 cut(s) 707
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 454, 483
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 1 cut(s) 707
BseMII CTCAG 2 cut(s) 378, 416
BseNI ACTGG 2 cut(s) 568, 718
BseSI GKGCMC 1 cut(s) 557
Bsh1236I CGCG 2 cut(s) 73, 144
BshFI GGCC 3 cut(s) 24, 249, 259
BsiHKAI GWGCWC 2 cut(s) 522, 557
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 483
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 171, 276
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 191
BsmFI GGGAC 2 cut(s) 171, 276
BsmI GAATGC 1 cut(s) 277
BsnI GGCC 3 cut(s) 24, 249, 259
BsoBI CYCGRG 1 cut(s) 194
Bsp119I TTCGAA 1 cut(s) 589
Bsp1286I GDGCHC 2 cut(s) 522, 557
Bsp143I GATC 1 cut(s) 27
BspACI CCGC 3 cut(s) 99, 160, 582
BspANI GGCC 3 cut(s) 24, 249, 259
BspCNI CTCAG 2 cut(s) 377, 417
BspFNI CGCG 2 cut(s) 73, 144
BspLI GGNNCC 1 cut(s) 258
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 589
BsrDI GCAATG 1 cut(s) 707
BsrI ACTGG 2 cut(s) 568, 718
BssECI CCNNGG 2 cut(s) 454, 483
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 589
BstDEI CTNAG 3 cut(s) 104, 364, 425
BstFNI CGCG 2 cut(s) 73, 144
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 3 cut(s) 150, 159, 581
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 186, 508
BstSCI CCNGG 2 cut(s) 482, 522
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 557
BstUI CGCG 2 cut(s) 73, 144
BstV2I GAAGAC 2 cut(s) 119, 433
BstXI CCANNNNNNTGG 1 cut(s) 245
BsuRI GGCC 3 cut(s) 24, 249, 259
BtgZI GCGATG 1 cut(s) 168
BtsIMutI CAGTG 3 cut(s) 422, 474, 555
Cfr13I GGNCC 3 cut(s) 235, 257, 631
Csp6I GTAC 1 cut(s) 146
CviAII CATG 4 cut(s) 183, 505, 649, 728
CviQI GTAC 1 cut(s) 146
DdeI CTNAG 3 cut(s) 104, 364, 425
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
DraI TTTAAA 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 235, 631
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 454
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 4 cut(s) 186, 508, 652, 731
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 2 cut(s) 171, 276
FatI CATG 4 cut(s) 182, 504, 648, 727
FblI GTMKAC 1 cut(s) 302
GsuI CTGGAG 2 cut(s) 585, 735
HaeIII GGCC 3 cut(s) 24, 249, 259
HapII CCGG 1 cut(s) 483
Hin1II CATG 4 cut(s) 186, 508, 652, 731
HinfI GANTC 1 cut(s) 567
HpaII CCGG 1 cut(s) 483
Hpy166II GTNNAC 2 cut(s) 303, 555
Hpy188I TCNGA 2 cut(s) 415, 640
Hpy188III TCNNGA 2 cut(s) 169, 196
Hpy8I GTNNAC 2 cut(s) 303, 555
Hpy99I CGWCG 1 cut(s) 14
HpyCH4IV ACGT 1 cut(s) 535
HpyCH4V TGCA 3 cut(s) 344, 555, 731
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 159, 581
HpyF3I CTNAG 3 cut(s) 104, 364, 425
HpySE526I ACGT 1 cut(s) 535
Hsp92II CATG 4 cut(s) 186, 508, 652, 731
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 2 cut(s) 517, 716
LweI GCATC 1 cut(s) 766
MaeII ACGT 1 cut(s) 535
MaeIII GTNAC 4 cut(s) 359, 395, 531, 709
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 2 cut(s) 124, 433
MfeI CAATTG 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 522, 557
MluI ACGCGT 1 cut(s) 142
MlyI GAGTC 1 cut(s) 576
MnlI CCTC 4 cut(s) 53, 84, 173, 314
Mph1103I ATGCAT 1 cut(s) 733
MseI TTAA 1 cut(s) 377
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 483
MspR9I CCNGG 2 cut(s) 484, 524
MunI CAATTG 1 cut(s) 430
Mva1269I GAATGC 1 cut(s) 277
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 2 cut(s) 73, 144
MwoI GCNNNNNNNGC 3 cut(s) 150, 159, 581
NciI CCSGG 1 cut(s) 484
NdeII GATC 1 cut(s) 27
NlaIII CATG 4 cut(s) 186, 508, 652, 731
NlaIV GGNNCC 1 cut(s) 258
NmeAIII GCCGAG 1 cut(s) 688
NmuCI GTSAC 3 cut(s) 359, 395, 531
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 2 cut(s) 186, 508
NspV TTCGAA 1 cut(s) 589
PaeR7I CTCGAG 1 cut(s) 194
PciI ACATGT 1 cut(s) 504
PctI GAATGC 1 cut(s) 277
Pfl23II CGTACG 1 cut(s) 145
PflMI CCANNNNNTGG 1 cut(s) 649
PleI GAGTC 1 cut(s) 575
PpsI GAGTC 1 cut(s) 575
PscI ACATGT 1 cut(s) 504
Psp6I CCWGG 1 cut(s) 522
PspGI CCWGG 1 cut(s) 522
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 258
PspPI GGNCC 3 cut(s) 235, 257, 631
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 1 cut(s) 147
RsaNI GTAC 1 cut(s) 146
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 1 cut(s) 377
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 3 cut(s) 235, 257, 631
SchI GAGTC 1 cut(s) 576
ScrFI CCNGG 2 cut(s) 484, 524
SduI GDGCHC 2 cut(s) 522, 557
SfaNI GCATC 1 cut(s) 766
SfcI CTRYAG 1 cut(s) 342
Sfr274I CTCGAG 1 cut(s) 194
SfuI TTCGAA 1 cut(s) 589
SinI GGWCC 2 cut(s) 235, 631
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
SsiI CCGC 3 cut(s) 99, 160, 582
SspI AATATT 1 cut(s) 619
StyD4I CCNGG 2 cut(s) 482, 522
StyI CCWWGG 1 cut(s) 454
TaiI ACGT 1 cut(s) 538
TaqI TCGA 4 cut(s) 170, 195, 489, 589
Tru1I TTAA 1 cut(s) 377
Tru9I TTAA 1 cut(s) 377
TscAI CASTG 3 cut(s) 429, 481, 562
TseFI GTSAC 3 cut(s) 359, 395, 531
Tsp45I GTSAC 3 cut(s) 359, 395, 531
TspDTI ATGAA 4 cut(s) 135, 284, 611, 716
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 3 cut(s) 429, 481, 562
Van91I CCANNNNNTGG 1 cut(s) 649
VneI GTGCAC 1 cut(s) 553
VpaK11BI GGWCC 2 cut(s) 235, 631
XceI RCATGY 2 cut(s) 186, 508
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.