Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

5151017 .. 5153613

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G006110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTTATACGTGCCAAAAAGAAATCAGGGAGCATTAGTTCCATGCTGAACGACGATTTGCTTTTCCTAATCCTTAACAAAATCAAGAACAAACGAGATAGAGAATCGTTCTCGCTGGTCTGCAAGCAGTGGTTAAGAGTGGAACGTCTGAACCGAACATCACTTTGGGTTCGCCAATCCGTACCCCCGGGTCTAATGACTAGATTCCCAAACTTAGTTGATTTCAGAACACGTGAGCTTACCACGCGAAAGAAAAAGAGAAATAAAAGAGCATGGAAGTATCAGCAGACCGATACCCACCTCGAGGTCATAGCCAAAACCTGTCACGAACTCGAGACCTTCATGGTAAGCTGTGAGAAGCATGATCTACAAAATGATGGTCATTTGGGGCCAAAAGGTCTACAAGCATTGGGAAATGGGTGTCCCAAATTATCCAGACTTATGTTTTGTGGGAGCAACGTGGTAGGGAATGCTGGAGTTGATGCGCTTTTTCACTCGGCACATAACTTGAAGTCTTTGTATCTGAGTTTTAATGATCTAATATCTGACCCAGCACTTAGAGCAATTGGATCATCTTCCATTAGCGCCTTGGAATTGGTATTTTGTGATAAAATTACTGATGTAGGATTAGGGTTTTTGACAAATGGTTCTACCTCAAAAACCATCAAGAAATTGGTCCTTGTGGGGTGCCCTCTTATCACTGATATTGGAGGTGTGGCAATTTCTGCAATTCAAACCCTCAAGGTATTGAGATTGAATGATGTGGACGTGTCAGACCATACCATGAAATTGACATTCAGTGATCTGGACGTGTTAGACCCTACCGTGGTCGCTCTTGTAAAGAATTGCCACAAATTGGAAACACTTGATTTAGAGTATTGTCAAAGGGTAACCAGAGCTGGCAGTCGTGCATTTACAAGTCATAAATGCTTGAAGCTCCTTGCATTGTTTGCTTCAAACAACTTTGTTCAGTCTGATGTGGAATGCATGGCAATTGGACGCCTGTCATTGGAGCCTGTTCTGTTAGACAAGTCGTTAACTAGGGGATTTAAATTGATGCAAGAGAATGCCAGAAGAGTGGTCAAATTCGAAAGTGATACCTTTATTGATCCACTTCTCCATTTCAGGACGATGTGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

380

Amino Acids

42.69

Weight (kDa)

9.39

Isoelectric Point (pI)

31.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box_5	PF18511	16 - 53	1.1e-09	F-box
DUF7885	PF25372	79 - 261	2.2e-12	Leucine Rich Repeat Domain of unknown function (DUF7885)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	302
AccB1I	GGYRCC	1 cut(s)	687
AccB7I	CCANNNNNTGG	1 cut(s)	856
AccI	GTMKAC	1 cut(s)	400
AccII	CGCG	1 cut(s)	247
AclWI	GGATC	2 cut(s)	577, 1103
AcsI	RAATTY	1 cut(s)	1085
AcvI	CACGTG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	1000
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	4 cut(s)	304, 826, 856, 1009
AflIII	ACRYGT	3 cut(s)	230, 768, 810
AgsI	TTSAA	5 cut(s)	511, 734, 757, 934, 957
AjiI	CACGTC	2 cut(s)	769, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	4 cut(s)	238, 351, 899, 937
AluI	AGCT	4 cut(s)	238, 351, 899, 937
Alw26I	GTCTC	1 cut(s)	329
AlwI	GGATC	2 cut(s)	577, 1103
Ama87I	CYCGRG	3 cut(s)	187, 302, 332
AoxI	GGCC	1 cut(s)	389
ApoI	RAATTY	1 cut(s)	1085
ArsI	GACNNNNNNTTYG	4 cut(s)	364, 396, 429, 461
AspLEI	GCGC	2 cut(s)	487, 587
AspS9I	GGNCC	2 cut(s)	389, 676
AsuC2I	CCSGG	2 cut(s)	188, 189
AsuII	TTCGAA	1 cut(s)	1089
AvaI	CYCGRG	3 cut(s)	187, 302, 332
AvaII	GGWCC	1 cut(s)	676
BaeGI	GKGCMC	1 cut(s)	692
BanI	GGYRCC	1 cut(s)	687
BbrPI	CACGTG	1 cut(s)	233
BccI	CCATC	2 cut(s)	371, 671
BcnI	CCSGG	2 cut(s)	188, 189
BcoDI	GTCTC	1 cut(s)	329
BfaI	CTAG	2 cut(s)	201, 1041
BfoI	RGCGCY	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	188, 189
Bme18I	GGWCC	1 cut(s)	676
BmeT110I	CYCGRG	3 cut(s)	187, 302, 332
BmgBI	CACGTC	2 cut(s)	769, 811
BmgT120I	GGNCC	2 cut(s)	389, 676
BmiI	GGNNCC	3 cut(s)	390, 689, 1014
BmrFI	CCNGG	2 cut(s)	188, 189
BmsI	GCATC	2 cut(s)	472, 1047
BoxI	GACNNNNGTC	1 cut(s)	1003
BpmI	CTGGAG	1 cut(s)	495
Bpu14I	TTCGAA	1 cut(s)	1089
BpuEI	CTTGAG	1 cut(s)	725
BpuMI	CCSGG	2 cut(s)	188, 189
BsaAI	YACGTR	2 cut(s)	11, 233
BsaHI	GRCGYC	1 cut(s)	1000
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	4 cut(s)	186, 187, 588, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 826, 856, 1009
BseDI	CCNNGG	4 cut(s)	186, 187, 588, 825
BseLI	CCNNNNNNNGG	4 cut(s)	304, 826, 856, 1009
BseMII	CTCAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	692
BseYI	CCCAGC	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	687
BsiHKCI	CYCGRG	3 cut(s)	187, 302, 332
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	408
BslI	CCNNNNNNNGG	4 cut(s)	304, 826, 856, 1009
BsmAI	GTCTC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	408
BsmI	GAATGC	3 cut(s)	475, 989, 1072
BsnI	GGCC	1 cut(s)	391
Bso31I	GGTCTC	1 cut(s)	329
BsoBI	CYCGRG	3 cut(s)	187, 302, 332
Bsp119I	TTCGAA	1 cut(s)	1089
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	5 cut(s)	364, 535, 569, 802, 1108
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	516
BspFNI	CGCG	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	390, 689, 1014
BspPI	GGATC	2 cut(s)	577, 1103
BspT104I	TTCGAA	1 cut(s)	1089
BspT107I	GGYRCC	1 cut(s)	687
BspTNI	GGTCTC	1 cut(s)	329
BssECI	CCNNGG	4 cut(s)	186, 187, 588, 825
BssMI	GATC	5 cut(s)	364, 535, 569, 802, 1108
BssNI	GRCGYC	1 cut(s)	1000
BssT1I	CCWWGG	1 cut(s)	588
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	1 cut(s)	1069
BstACI	GRCGYC	1 cut(s)	1000
BstAPI	GCANNNNNTGC	2 cut(s)	725, 950
BstBAI	YACGTR	2 cut(s)	11, 233
BstBI	TTCGAA	1 cut(s)	1089
BstC8I	GCNNGC	2 cut(s)	125, 901
BstDEI	CTNAG	3 cut(s)	214, 524, 557
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	889
BstFNI	CGCG	1 cut(s)	247
BstH2I	RGCGCY	1 cut(s)	588
BstHHI	GCGC	2 cut(s)	487, 587
BstKTI	GATC	5 cut(s)	367, 538, 572, 805, 1111
BstMAI	GTCTC	1 cut(s)	329
BstMBI	GATC	5 cut(s)	364, 535, 569, 802, 1108
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 560, 725, 950
BstPAI	GACNNNNGTC	1 cut(s)	1003
BstPI	GGTNACC	1 cut(s)	889
BstSCI	CCNGG	2 cut(s)	186, 187
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	1 cut(s)	247
BstXI	CCANNNNNNTGG	1 cut(s)	1078
BsuRI	GGCC	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	825
BtrI	CACGTC	2 cut(s)	769, 811
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	3 cut(s)	134, 699, 805
Cac8I	GCNNGC	2 cut(s)	125, 901
CfoI	GCGC	2 cut(s)	487, 587
Cfr13I	GGNCC	2 cut(s)	389, 676
Cfr9I	CCCGGG	1 cut(s)	187
CseI	GACGC	1 cut(s)	1008
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	6 cut(s)	43, 273, 343, 362, 784, 988
CviJI	RGCY	7 cut(s)	238, 314, 351, 391, 899, 937, 1015
CviKI_1	RGCY	7 cut(s)	238, 314, 351, 391, 899, 937, 1015
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	3 cut(s)	214, 524, 557
DpnI	GATC	5 cut(s)	366, 537, 571, 804, 1110
DpnII	GATC	5 cut(s)	364, 535, 569, 802, 1108
DraI	TTTAAA	1 cut(s)	1051
Eam1104I	CTCTTC	1 cut(s)	1069
EarI	CTCTTC	1 cut(s)	1069
Eco130I	CCWWGG	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	676
Eco72I	CACGTG	1 cut(s)	233
Eco88I	CYCGRG	3 cut(s)	187, 302, 332
Eco91I	GGTNACC	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	889
EcoT14I	CCWWGG	1 cut(s)	588
EcoT22I	ATGCAT	1 cut(s)	989
ErhI	CCWWGG	1 cut(s)	588
FaeI	CATG	6 cut(s)	46, 276, 346, 365, 787, 991
FaqI	GGGAC	1 cut(s)	408
FatI	CATG	6 cut(s)	42, 272, 342, 361, 783, 987
FblI	GTMKAC	1 cut(s)	400
FspBI	CTAG	2 cut(s)	201, 1041
GlaI	GCGC	2 cut(s)	486, 586
GsaI	CCCAGC	1 cut(s)	554
GsuI	CTGGAG	1 cut(s)	495
HaeII	RGCGCY	1 cut(s)	588
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	1008
HhaI	GCGC	2 cut(s)	487, 587
Hin1I	GRCGYC	1 cut(s)	1000
Hin1II	CATG	6 cut(s)	46, 276, 346, 365, 787, 991
Hin6I	GCGC	2 cut(s)	485, 585
HinP1I	GCGC	2 cut(s)	485, 585
HincII	GTYRAC	1 cut(s)	1038
HindII	GTYRAC	1 cut(s)	1038
HinfI	GANTC	2 cut(s)	104, 204
HpaI	GTTAAC	1 cut(s)	1038
HpaII	CCGG	1 cut(s)	188
Hpy166II	GTNNAC	3 cut(s)	401, 766, 1038
Hpy188I	TCNGA	6 cut(s)	150, 227, 525, 547, 775, 976
Hpy188III	TCNNGA	7 cut(s)	85, 326, 334, 435, 667, 806, 1126
Hpy8I	GTNNAC	3 cut(s)	401, 766, 1038
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	6 cut(s)	10, 145, 232, 459, 768, 810
HpyCH4V	TGCA	6 cut(s)	123, 728, 911, 944, 987, 1060
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 560, 725, 950
HpyF3I	CTNAG	3 cut(s)	214, 524, 557
HpySE526I	ACGT	6 cut(s)	10, 145, 232, 459, 768, 810
Hsp92I	GRCGYC	1 cut(s)	1000
Hsp92II	CATG	6 cut(s)	46, 276, 346, 365, 787, 991
HspAI	GCGC	2 cut(s)	485, 585
KspAI	GTTAAC	1 cut(s)	1038
Kzo9I	GATC	5 cut(s)	364, 535, 569, 802, 1108
LmnI	GCTCC	4 cut(s)	30, 453, 942, 1012
LweI	GCATC	2 cut(s)	472, 1047
MaeI	CTAG	2 cut(s)	201, 1041
MaeII	ACGT	6 cut(s)	10, 145, 232, 459, 768, 810
MaeIII	GTNAC	2 cut(s)	323, 889
MalI	GATC	5 cut(s)	366, 537, 571, 804, 1110
MboI	GATC	5 cut(s)	364, 535, 569, 802, 1108
MboII	GAAGA	2 cut(s)	567, 1086
MfeI	CAATTG	2 cut(s)	564, 993
MhlI	GDGCHC	1 cut(s)	692
MnlI	CCTC	6 cut(s)	298, 311, 664, 702, 704, 749
Mph1103I	ATGCAT	1 cut(s)	989
MseI	TTAA	5 cut(s)	75, 134, 531, 1037, 1050
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	188, 189
MunI	CAATTG	2 cut(s)	564, 993
Mva1269I	GAATGC	3 cut(s)	475, 989, 1072
MvnI	CGCG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	244, 560, 725, 950
NciI	CCSGG	2 cut(s)	188, 189
NdeII	GATC	5 cut(s)	364, 535, 569, 802, 1108
NlaIII	CATG	6 cut(s)	46, 276, 346, 365, 787, 991
NlaIV	GGNNCC	3 cut(s)	390, 689, 1014
NmeAIII	GCCGAG	1 cut(s)	476
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	989
NspV	TTCGAA	1 cut(s)	1089
PaeR7I	CTCGAG	2 cut(s)	302, 332
PcsI	WCGNNNNNNNCGW	1 cut(s)	151
PctI	GAATGC	3 cut(s)	475, 989, 1072
PfeI	GAWTC	2 cut(s)	104, 204
PflMI	CCANNNNNTGG	1 cut(s)	856
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
Ppu21I	YACGTR	2 cut(s)	11, 233
PshAI	GACNNNNGTC	1 cut(s)	1003
PspCI	CACGTG	1 cut(s)	233
PspEI	GGTNACC	1 cut(s)	889
PspFI	CCCAGC	1 cut(s)	550
PspN4I	GGNNCC	3 cut(s)	390, 689, 1014
PspPI	GGNCC	2 cut(s)	389, 676
PspXI	VCTCGAGB	1 cut(s)	302
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	5 cut(s)	75, 134, 531, 1037, 1050
Sau3AI	GATC	5 cut(s)	364, 535, 569, 802, 1108
Sau96I	GGNCC	2 cut(s)	389, 676
ScrFI	CCNGG	2 cut(s)	188, 189
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	2 cut(s)	472, 1047
Sfr274I	CTCGAG	2 cut(s)	302, 332
SfuI	TTCGAA	1 cut(s)	1089
SinI	GGWCC	1 cut(s)	676
SlaI	CTCGAG	2 cut(s)	302, 332
SmaI	CCCGGG	1 cut(s)	189
SmiI	ATTTAAAT	1 cut(s)	1051
SmlI	CTYRAG	3 cut(s)	302, 332, 740
SmoI	CTYRAG	3 cut(s)	302, 332, 740
SspMI	CTAG	2 cut(s)	201, 1041
StyD4I	CCNGG	2 cut(s)	186, 187
StyI	CCWWGG	1 cut(s)	588
SwaI	ATTTAAAT	1 cut(s)	1051
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	6 cut(s)	13, 148, 235, 462, 771, 813
TaqI	TCGA	3 cut(s)	303, 333, 1089
TaqII	GACCGA	1 cut(s)	305
TfiI	GAWTC	2 cut(s)	104, 204
Tru1I	TTAA	5 cut(s)	75, 134, 531, 1037, 1050
Tru9I	TTAA	5 cut(s)	75, 134, 531, 1037, 1050
TscAI	CASTG	3 cut(s)	134, 706, 805
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	331, 800
TspGWI	ACGGA	1 cut(s)	169
TspMI	CCCGGG	1 cut(s)	187
TspRI	CASTG	3 cut(s)	134, 706, 805
Van91I	CCANNNNNTGG	1 cut(s)	856
VpaK11BI	GGWCC	1 cut(s)	676
XapI	RAATTY	1 cut(s)	1085
XcmI	CCANNNNNNNNNTGG	2 cut(s)	586, 670
XhoI	CTCGAG	2 cut(s)	302, 332
XmaI	CCCGGG	1 cut(s)	187
XmiI	GTMKAC	1 cut(s)	400
XspI	CTAG	2 cut(s)	201, 1041
Zsp2I	ATGCAT	1 cut(s)	989

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.