Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

5404950 .. 5406345

Gene Structure 1396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09361.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCTGAACGACGACATACTTGGCCTGATCCTTGAAAAAATCCTACACCAAGAAGACAGAGACTCGTTCGCGGAGGTGTGCAAGCAATGGTTAAGAGTGCGACGTCTAAACCGAAGATATCTTCTGCTTTACGATTGCATACCGGCGGGGGACTTTACATTCCCAAACTTAGTCGATGTCAGGACATGGATGATGCCTAACCGCAGTGGAGTCATAATTGAACCGCCGCCCGACGCCCGCCTCATCTCGATAGCCAAAGCATGTCCCAGACTCGAGAGTTTGACGGTGGGCATTTATGACGACGAACAACAGGTCGATGGTGACGGTGCTTATGGCCCAGAAAGTATGCATGCTTTGGCAACTGGGTTCCCCAACTTGTCTGAGCTTATATTCTGGGGGAGAAAGGTGGTGGGAAATCCTGCAGTTGTTGCGTTTTTTCACTCAACACATAAGAACTTGAAGGAATTGTATGTGATAGATAATGTTCTTATCTCTGACCCAGCAGTTAGAGCAATTGGATCATCATCCATAATCACCTTGGAATTGGAATGTTGTGATAACGTTACTGATGTGGGATTAGGGTTTTTGGCAGCCTCAAAAACTATCGAGATTCTGACCCTCACAAAGTGCCCTAAAATCACTGATGCCTGTGTCGAGCTATTGCGTAGCATGTGTAGATTGGTTTACCTGTCATTCACCTGCAAGGTGAAAAATCAATTGACTGAAACTGGAGTCGTGGCGATTTCTAGAATTCAAACCCTAAAGCAATTGAATTTGAGTAATCTGGACATGTCAGACCGCGCCATGGTCGCTCTTGCCAAGAATTGCAGCAACTTGGAGGAACTTGCTTTAGAGAATTCTGAGGTGACCGGAACTGGCGTTCGTGCATTTTCAGGTCATAAATACCTGAAATTTCTTTCAGTAATGTATTATTTGCCTTGCAACCAGTTGCCTTACAACTTCAAGCTATCAGAGTTGAAATACAACTTCGATCAATCAGATGTGGAACACATAGCGCTTAGATGCCCGTCATTGGACTGTGTTGTATTATTCGAGTGGTTTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007010 GO:0008150 GO:0009987 GO:0016043 GO:0030139 GO:0031410 GO:0031982 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044444 GO:0044464 GO:0071840 GO:0097708

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Ank Ank_2 Ank_4 Ank_5 ArfGap BAR_3 PH

Protein Analysis

356

Amino Acids

39.93

Weight (kDa)

5.49

Isoelectric Point (pI)

44.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	707
AatII	GACGTC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	707
AccII	CGCG	2 cut(s)	71, 801
AciI	CCGC	7 cut(s)	71, 146, 202, 224, 227, 238, 799
AclI	AACGTT	1 cut(s)	561
AclWI	GGATC	2 cut(s)	22, 526
AcsI	RAATTY	4 cut(s)	750, 772, 856, 911
AcyI	GRCGYC	2 cut(s)	103, 234
AdeI	CACNNNGTG	1 cut(s)	627
AfeI	AGCGCT	1 cut(s)	1017
AfiI	CCNNNNNNNGG	2 cut(s)	805, 1033
AflIII	ACRYGT	1 cut(s)	789
AgsI	TTSAA	7 cut(s)	35, 221, 460, 755, 772, 964, 979
AloI	GAACNNNNNNTCC	2 cut(s)	864, 896
AluBI	AGCT	3 cut(s)	385, 658, 967
AluI	AGCT	3 cut(s)	385, 658, 967
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	22, 526
Ama87I	CYCGRG	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	1017
AoxI	GGCC	2 cut(s)	22, 334
ApeKI	GCWGC	2 cut(s)	590, 828
ApoI	RAATTY	4 cut(s)	750, 772, 856, 911
ArsI	GACNNNNNNTTYG	2 cut(s)	297, 329
AspLEI	GCGC	2 cut(s)	803, 1018
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	5 cut(s)	332, 526, 688, 718, 877
AvaI	CYCGRG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	632
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	602, 840
BccI	CCATC	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	420
BfoI	RGCGCY	1 cut(s)	1019
BfuAI	ACCTGC	1 cut(s)	707
BisI	GCNGC	3 cut(s)	227, 591, 829
BlsI	GCNGC	3 cut(s)	228, 592, 830
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	3 cut(s)	183, 634, 1013
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	523
BsaHI	GRCGYC	2 cut(s)	103, 234
BsaJI	CCNNGG	2 cut(s)	537, 804
BsaWI	WCCGGW	1 cut(s)	869
Bsc4I	CCNNNNNNNGG	2 cut(s)	805, 1033
Bse118I	RCCGGY	1 cut(s)	142
Bse1I	ACTGG	4 cut(s)	367, 733, 880, 946
Bse3DI	GCAATG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	523
BseDI	CCNNGG	2 cut(s)	537, 804
BseGI	GGATG	2 cut(s)	195, 524
BseJI	GATNNNNATC	1 cut(s)	523
BseLI	CCNNNNNNNGG	2 cut(s)	805, 1033
BseMI	GCAATG	1 cut(s)	92
BseMII	CTCAG	2 cut(s)	372, 852
BseNI	ACTGG	4 cut(s)	367, 733, 880, 946
BseSI	GKGCMC	1 cut(s)	632
BseXI	GCAGC	2 cut(s)	602, 840
BseYI	CCCAGC	1 cut(s)	499
Bsh1236I	CGCG	2 cut(s)	71, 801
BshFI	GGCC	2 cut(s)	24, 336
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	143, 870
BslFI	GGGAC	2 cut(s)	164, 249
BslI	CCNNNNNNNGG	2 cut(s)	805, 1033
BsmAI	GTCTC	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	164, 249
BsnI	GGCC	2 cut(s)	24, 336
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	632
Bsp143I	GATC	3 cut(s)	27, 518, 991
Bsp19I	CCATGG	1 cut(s)	804
BspACI	CCGC	7 cut(s)	71, 146, 202, 224, 227, 238, 799
BspANI	GGCC	2 cut(s)	24, 336
BspCNI	CTCAG	2 cut(s)	373, 853
BspFNI	CGCG	2 cut(s)	71, 801
BspLI	GGNNCC	1 cut(s)	368
BspMAI	CTGCAG	1 cut(s)	424
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	2 cut(s)	22, 526
BsrDI	GCAATG	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	367, 733, 880, 946
BssAI	RCCGGY	1 cut(s)	142
BssECI	CCNNGG	2 cut(s)	537, 804
BssMI	GATC	3 cut(s)	27, 518, 991
BssNI	GRCGYC	2 cut(s)	103, 234
BssT1I	CCWWGG	2 cut(s)	537, 804
Bst4CI	ACNGT	3 cut(s)	286, 326, 1040
BstACI	GRCGYC	2 cut(s)	103, 234
BstAPI	GCANNNNNTGC	1 cut(s)	428
BstC8I	GCNNGC	3 cut(s)	83, 238, 351
BstDEI	CTNAG	4 cut(s)	169, 381, 861, 1019
BstDSI	CCRYGG	1 cut(s)	804
BstEII	GGTNACC	1 cut(s)	865
BstF5I	GGATG	2 cut(s)	195, 524
BstFNI	CGCG	2 cut(s)	71, 801
BstH2I	RGCGCY	1 cut(s)	1019
BstHHI	GCGC	2 cut(s)	803, 1018
BstKTI	GATC	3 cut(s)	30, 521, 994
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	27, 518, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	428, 509, 809
BstNSI	RCATGY	4 cut(s)	264, 353, 673, 793
BstPI	GGTNACC	1 cut(s)	865
BstSFI	CTRYAG	1 cut(s)	420
BstSLI	GKGCMC	1 cut(s)	632
BstUI	CGCG	2 cut(s)	71, 801
BstV1I	GCAGC	2 cut(s)	602, 840
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	24, 336
BtgI	CCRYGG	1 cut(s)	804
BtsCI	GGATG	2 cut(s)	195, 524
BtsI	GCAGTG	1 cut(s)	211
BtsIMutI	CAGTG	2 cut(s)	211, 639
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	3 cut(s)	83, 238, 351
CfoI	GCGC	2 cut(s)	803, 1018
Cfr10I	RCCGGY	1 cut(s)	142
Cfr13I	GGNCC	1 cut(s)	335
CseI	GACGC	1 cut(s)	242
CviAII	CATG	6 cut(s)	186, 261, 350, 670, 790, 805
CviJI	RGCY	7 cut(s)	24, 254, 336, 385, 593, 658, 967
CviKI_1	RGCY	7 cut(s)	24, 254, 336, 385, 593, 658, 967
DdeI	CTNAG	4 cut(s)	169, 381, 861, 1019
DpnI	GATC	3 cut(s)	29, 520, 993
DpnII	GATC	3 cut(s)	27, 518, 991
DraI	TTTAAA	1 cut(s)	1063
DraIII	CACNNNGTG	1 cut(s)	627
Eco130I	CCWWGG	2 cut(s)	537, 804
Eco32I	GATATC	1 cut(s)	119
Eco47III	AGCGCT	1 cut(s)	1017
Eco88I	CYCGRG	1 cut(s)	272
Eco91I	GGTNACC	1 cut(s)	865
EcoO65I	GGTNACC	1 cut(s)	865
EcoRI	GAATTC	2 cut(s)	750, 856
EcoRV	GATATC	1 cut(s)	119
EcoT14I	CCWWGG	2 cut(s)	537, 804
EcoT22I	ATGCAT	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	537, 804
FaeI	CATG	6 cut(s)	189, 264, 353, 673, 793, 808
FaqI	GGGAC	2 cut(s)	164, 249
FatI	CATG	6 cut(s)	185, 260, 349, 669, 789, 804
FauI	CCCGC	2 cut(s)	139, 245
Fnu4HI	GCNGC	3 cut(s)	227, 591, 829
FokI	GGATG	2 cut(s)	202, 511
Fsp4HI	GCNGC	3 cut(s)	227, 591, 829
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	2 cut(s)	802, 1017
GluI	GCNGC	3 cut(s)	227, 591, 829
GsaI	CCCAGC	1 cut(s)	503
GsuI	CTGGAG	1 cut(s)	750
HaeII	RGCGCY	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	24, 336
HapII	CCGG	2 cut(s)	143, 870
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	2 cut(s)	803, 1018
Hin1I	GRCGYC	2 cut(s)	103, 234
Hin1II	CATG	6 cut(s)	189, 264, 353, 673, 793, 808
Hin6I	GCGC	2 cut(s)	801, 1016
HinP1I	GCGC	2 cut(s)	801, 1016
HinfI	GANTC	5 cut(s)	62, 210, 270, 610, 732
HpaII	CCGG	2 cut(s)	143, 870
HphI	GGTGA	5 cut(s)	332, 526, 688, 718, 877
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	7 cut(s)	382, 496, 615, 796, 862, 973, 1000
Hpy188III	TCNNGA	6 cut(s)	181, 247, 274, 607, 747, 785
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	4 cut(s)	14, 105, 236, 305
HpyAV	CCTTC	1 cut(s)	454
HpyCH4III	ACNGT	3 cut(s)	286, 326, 1040
HpyCH4IV	ACGT	2 cut(s)	103, 561
HpyCH4V	TGCA	8 cut(s)	81, 138, 349, 422, 702, 828, 887, 942
HpyF10VI	GCNNNNNNNGC	3 cut(s)	428, 509, 809
HpyF3I	CTNAG	4 cut(s)	169, 381, 861, 1019
HpySE526I	ACGT	2 cut(s)	103, 561
Hsp92I	GRCGYC	2 cut(s)	103, 234
Hsp92II	CATG	6 cut(s)	189, 264, 353, 673, 793, 808
HspAI	GCGC	2 cut(s)	801, 1016
Kzo9I	GATC	3 cut(s)	27, 518, 991
Lsp1109I	GCAGC	2 cut(s)	602, 840
LweI	GCATC	3 cut(s)	183, 634, 1013
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	103, 561
MaeIII	GTNAC	3 cut(s)	320, 562, 865
MalI	GATC	3 cut(s)	29, 520, 993
MboI	GATC	3 cut(s)	27, 518, 991
MboII	GAAGA	3 cut(s)	65, 113, 126
MfeI	CAATTG	3 cut(s)	513, 716, 767
MhlI	GDGCHC	1 cut(s)	632
MlyI	GAGTC	4 cut(s)	56, 219, 264, 741
MnlI	CCTC	6 cut(s)	67, 251, 604, 629, 832, 856
Mph1103I	ATGCAT	1 cut(s)	351
MseI	TTAA	2 cut(s)	92, 1062
MspI	CCGG	2 cut(s)	143, 870
MunI	CAATTG	3 cut(s)	513, 716, 767
MvnI	CGCG	2 cut(s)	71, 801
MwoI	GCNNNNNNNGC	3 cut(s)	428, 509, 809
NcoI	CCATGG	1 cut(s)	804
NdeII	GATC	3 cut(s)	27, 518, 991
NlaIII	CATG	6 cut(s)	189, 264, 353, 673, 793, 808
NlaIV	GGNNCC	1 cut(s)	368
NmuCI	GTSAC	2 cut(s)	320, 865
NsiI	ATGCAT	1 cut(s)	351
NspI	RCATGY	4 cut(s)	264, 353, 673, 793
PaeI	GCATGC	1 cut(s)	353
PaeR7I	CTCGAG	1 cut(s)	272
PaqCI	CACCTGC	1 cut(s)	707
PciI	ACATGT	1 cut(s)	789
PcsI	WCGNNNNNNNCGW	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	610
PkrI	GCNGC	3 cut(s)	228, 592, 830
PleI	GAGTC	4 cut(s)	56, 218, 264, 740
PpsI	GAGTC	4 cut(s)	56, 218, 264, 740
PscI	ACATGT	1 cut(s)	789
Psp1406I	AACGTT	1 cut(s)	561
PspEI	GGTNACC	1 cut(s)	865
PspFI	CCCAGC	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	368
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	92, 1062
SatI	GCNGC	3 cut(s)	227, 591, 829
Sau3AI	GATC	3 cut(s)	27, 518, 991
Sau96I	GGNCC	1 cut(s)	335
SchI	GAGTC	4 cut(s)	56, 219, 264, 741
SduI	GDGCHC	1 cut(s)	632
SfaNI	GCATC	3 cut(s)	183, 634, 1013
SfcI	CTRYAG	1 cut(s)	420
Sfr274I	CTCGAG	1 cut(s)	272
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SphI	GCATGC	1 cut(s)	353
SsiI	CCGC	7 cut(s)	71, 146, 202, 224, 227, 238, 799
SspMI	CTAG	1 cut(s)	747
StyI	CCWWGG	2 cut(s)	537, 804
TaaI	ACNGT	3 cut(s)	286, 326, 1040
TaiI	ACGT	2 cut(s)	106, 564
TaqI	TCGA	8 cut(s)	174, 248, 273, 315, 606, 654, 990, 1053
TauI	GCSGC	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	92, 1062
Tru9I	TTAA	2 cut(s)	92, 1062
TscAI	CASTG	2 cut(s)	211, 646
TseFI	GTSAC	2 cut(s)	320, 865
TseI	GCWGC	2 cut(s)	590, 828
Tsp45I	GTSAC	2 cut(s)	320, 865
TspRI	CASTG	2 cut(s)	211, 646
XapI	RAATTY	4 cut(s)	750, 772, 856, 911
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	4 cut(s)	264, 353, 673, 793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XhoI	CTCGAG	1 cut(s)	272
XspI	CTAG	1 cut(s)	747
ZraI	GACGTC	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.