Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008126

Physical Location & Seq

Genomic Coordinates Reverse (-)

37106162 .. 37107928

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g44530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTACAAGGAAACGAGGGTATATTAATTCCATGTTGCAGGACGATTTACTTGCCCAAATCCTTAGCAAGGTCGACAACAATGATGTAGGATTGGGATTCCTGGCAAATGCTAAAACCCTCAAGAAATTGATCCTTGAGCATTGTGATGGAATCACCGATACTGGGATCCAGCTTTTGGTCAACTTGGGTAGCTTAGAGCACCTAGAACTGGCCTCATTGAACAAATTGACTGATACCGGAGGTGTGGCAATCTTGACAATTCAAACCCTCAGGGAATTAAAACCGAGTGAGATTTGGAAGTTGTCAGACCGTACAGTTGTTGCCCTTGCTGAGAACTGCCGCAACTTGGAAGTACTTGTCTTGGATCGTATAAGGTATCGTATAGATGAACCTTTGCTTGGACATGCACCACAAGTGGCTGTAAATGGGCTTTGCCGCCCCAGAAACCGCCTCCGATGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_6

Protein Analysis

156

Amino Acids

17.38

Weight (kDa)

8.88

Isoelectric Point (pI)

23.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008126)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g37241 FvH4_3g00150 FvH4_3g11250 FvH4_3g11250 FvH4_3g11250 FvH4_3g11280 FvH4_3g44530 FvH4_5g09361 FvH4_5g12191 FvH4_5g12240 FvH4_7g07300 FvH4_7g18342 FvH4_7g29850 FvH4_7g29850
rosa_chinensis	RchiOBHm_Chr7g0185371
rosa_laevigata	RLG00000004918
rosa_multiflora	Rmu_sc0001761.1_g000014 Rmu_sc0008496.1_g000001
rosa_rugosa	Rorug06G0468500 Rorug06G0468600
rosa_samantha	Rh7AG074300 Rh7BG073100 Rh7DG073500
rosa_wichuraiana	Rw7G006110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	3 cut(s)	343, 439, 451
AclWI	GGATC	4 cut(s)	127, 163, 176, 375
AfaI	GTAC	2 cut(s)	316, 357
AfiI	CCNNNNNNNGG	6 cut(s)	70, 165, 178, 211, 349, 401
AgsI	TTSAA	2 cut(s)	223, 266
AjnI	CCWGG	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AluBI	AGCT	2 cut(s)	175, 195
AluI	AGCT	2 cut(s)	175, 195
Alw21I	GWGCWC	1 cut(s)	204
AlwI	GGATC	4 cut(s)	127, 163, 176, 375
AoxI	GGCC	1 cut(s)	213
AseI	ATTAAT	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	272
BamHI	GGATCC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	204
BccI	CCATC	2 cut(s)	143, 453
BcgI	CGANNNNNNTGC	2 cut(s)	35, 69
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	206
BisI	GCNGC	2 cut(s)	343, 439
BlsI	GCNGC	2 cut(s)	344, 440
BmcAI	AGTACT	1 cut(s)	357
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	1 cut(s)	104
BmrI	ACTGGG	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	65
BpuEI	CTTGAG	2 cut(s)	107, 158
BsaWI	WCCGGW	1 cut(s)	239
Bsc4I	CCNNNNNNNGG	6 cut(s)	70, 165, 178, 211, 349, 401
Bse1I	ACTGG	2 cut(s)	169, 216
Bse21I	CCTNAGG	1 cut(s)	272
BseBI	CCWGG	1 cut(s)	104
BseLI	CCNNNNNNNGG	6 cut(s)	70, 165, 178, 211, 349, 401
BseMII	CTCAG	2 cut(s)	286, 324
BseNI	ACTGG	2 cut(s)	169, 216
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	240
BslI	CCNNNNNNNGG	6 cut(s)	70, 165, 178, 211, 349, 401
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp143I	GATC	3 cut(s)	132, 168, 367
BspACI	CCGC	3 cut(s)	343, 439, 451
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	285, 325
BspLI	GGNNCC	1 cut(s)	170
BspPI	GGATC	4 cut(s)	127, 163, 176, 375
BsrI	ACTGG	2 cut(s)	169, 216
BssMI	GATC	3 cut(s)	132, 168, 367
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	314, 319
BstDEI	CTNAG	4 cut(s)	65, 196, 272, 333
BstENI	CCTNNNNNAGG	1 cut(s)	68
BstKTI	GATC	3 cut(s)	135, 171, 370
BstMBI	GATC	3 cut(s)	132, 168, 367
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	315, 356
CviAII	CATG	2 cut(s)	34, 407
CviJI	RGCY	6 cut(s)	5, 175, 195, 215, 422, 433
CviKI_1	RGCY	6 cut(s)	5, 175, 195, 215, 422, 433
CviQI	GTAC	2 cut(s)	315, 356
DdeI	CTNAG	4 cut(s)	65, 196, 272, 333
DpnI	GATC	3 cut(s)	134, 170, 369
DpnII	GATC	3 cut(s)	132, 168, 367
Eco81I	CCTNAGG	1 cut(s)	272
EcoNI	CCTNNNNNAGG	1 cut(s)	68
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	37, 410
FaiI	YATR	5 cut(s)	24, 35, 374, 386, 408
FatI	CATG	2 cut(s)	33, 406
FblI	GTMKAC	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	343, 439
Fsp4HI	GCNGC	2 cut(s)	343, 439
FspBI	CTAG	1 cut(s)	206
GluI	GCNGC	2 cut(s)	343, 439
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	2 cut(s)	37, 410
HincII	GTYRAC	2 cut(s)	76, 184
HindII	GTYRAC	2 cut(s)	76, 184
HinfI	GANTC	2 cut(s)	99, 153
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	2 cut(s)	76, 184
Hpy188I	TCNGA	2 cut(s)	310, 458
Hpy188III	TCNNGA	2 cut(s)	124, 256
Hpy8I	GTNNAC	2 cut(s)	76, 184
HpyCH4III	ACNGT	2 cut(s)	314, 319
HpyCH4V	TGCA	2 cut(s)	40, 410
HpyF3I	CTNAG	4 cut(s)	65, 196, 272, 333
Hsp92II	CATG	2 cut(s)	37, 410
Kzo9I	GATC	3 cut(s)	132, 168, 367
LpnPI	CCDG	9 cut(s)	26, 89, 116, 150, 185, 197, 253, 259, 457
MaeI	CTAG	1 cut(s)	206
MalI	GATC	3 cut(s)	134, 170, 369
MboI	GATC	3 cut(s)	132, 168, 367
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	5 cut(s)	28, 128, 227, 261, 278
MnlI	CCTC	7 cut(s)	11, 131, 226, 236, 281, 456, 464
MseI	TTAA	2 cut(s)	27, 281
MslI	CAYNNNNRTG	1 cut(s)	147
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
NdeII	GATC	3 cut(s)	132, 168, 367
NlaIII	CATG	2 cut(s)	37, 410
NlaIV	GGNNCC	1 cut(s)	170
NspI	RCATGY	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	99, 153
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	2 cut(s)	344, 440
PshBI	ATTAAT	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	2 cut(s)	316, 357
RsaNI	GTAC	2 cut(s)	315, 356
RseI	CAYNNNNRTG	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	27, 281
SatI	GCNGC	2 cut(s)	343, 439
Sau3AI	GATC	3 cut(s)	132, 168, 367
ScaI	AGTACT	1 cut(s)	357
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	204
SetI	ASST	8 cut(s)	75, 177, 197, 207, 247, 380, 397, 467
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	122, 137
SmoI	CTYRAG	2 cut(s)	122, 137
Sse9I	AATT	5 cut(s)	28, 128, 227, 261, 278
SsiI	CCGC	3 cut(s)	343, 439, 451
SspMI	CTAG	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	2 cut(s)	314, 319
TaqI	TCGA	1 cut(s)	75
TasI	AATT	5 cut(s)	28, 128, 227, 261, 278
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	2 cut(s)	345, 441
TfiI	GAWTC	2 cut(s)	99, 153
Tru1I	TTAA	2 cut(s)	27, 281
Tru9I	TTAA	2 cut(s)	27, 281
TspDTI	ATGAA	1 cut(s)	405
Van91I	CCANNNNNTGG	1 cut(s)	178
VspI	ATTAAT	1 cut(s)	27
XagI	CCTNNNNNAGG	1 cut(s)	68
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	75
XspI	CTAG	1 cut(s)	206
ZrmI	AGTACT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.