FvH4_2g39271

RNase H

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28250812 .. 28254209
3398 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39271.t4

Sequence Viewer

Length: 1071 bp
ATGAACTGCTTGTCGCAGGTCTCATCATACACGGCCGCGATTCTCCGAACGACAGGTCGTTCTCTGTACGCACCTTGGAAGCGAAAATCGAACGTCCATGCCGCGGTGAAGCTAATCAGCTTCGAACCGACCCTTTCGCGGTTCCGGACTCATCTCTACTCGTCTCAGAGCAAAGCGACGTCGTCTCGGCCGCGGAAGAAGAAGTCAGTTATGGACCCGCCGGAGAAGGACGCGTTCTATGTGGTCCGCAAAGGAAACGTCGTCGGTGTCTATAAGAGCTTGGCCGATTGCCAAGCTCAGCAGGGCTCTTCGATATGTGATCCTCCTGTTAGTGTGTACAAAGGGTACTCTATGCCTAAGAAAGATGAGCAGTATTTAGCTTCCTGTGGACTTCAGAATGCGCTTTATACGATTTCGGCTGCCGATATGAAAGATGAGCTGTTTGGCAAGCTTGTGGATTGTCCTGGTCTAGATCCGGCAGCTGCAGAAGGCGAAACGTCTGGTAAGACTGCAGCCAAAAAGAGATCCCACCAAGAGGTTGAATCAGAAAATGTGGAAGTAATTGGTGCAGCTTCCGTATCAGACACTCCTTCCAGAAAGCAGGCCAAGAAAAAGGCTGAAGTTGAAGTTCCCCCTTTGGGTCGTGGCTGTACTCTTCAATTTGATGGCGCATCAAAAGGAAATCCTGGGACAGCTGGTGCTGGAGCTGTACTGCGAGCGGATGATGGAACATTGATCTGTAAACTACGTGAAGGTCTGGGTGTTGCAACCAATAATGTTGCCGAGTACCGAGCTGTTATTTTAGGGTTGAAATATGCGCTTGAAAAAGGTTTTTCCAGGATTTTTGTTCAAGGCGACTCCAAACTTGTTTGTATGCAGGTTCAGGGGTTATGGCAGGTGAAAAACCAGAACCTGTCTACTTTGTATGAAGAGGTGAAGAAACTGAAGGATAGATTTGTTTCCTTCAAGATCAGTCATGTTCTTAGGGAGCTAAATTCTGAGGCAGATGCTCAAGCGAACTTGGCAATCACTCTTGCTGATGGTCAAGTCCAGGAGGAGTGTGACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

357

Amino Acids

38.66

Weight (kDa)

9.1

Isoelectric Point (pI)

35.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 219 - 314 9.1e-09 RNase H
RVT_3 PF13456 221 - 329 5.7e-24 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 886
AatII GACGTC 1 cut(s) 182
Acc36I ACCTGC 3 cut(s) 7, 868, 886
AccBSI CCGCTC 1 cut(s) 719
AccI GTMKAC 1 cut(s) 917
AccII CGCG 5 cut(s) 38, 104, 139, 193, 233
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 9 cut(s) 36, 102, 104, 139, 191, 193, 218, 247, 719
AclWI GGATC 3 cut(s) 314, 467, 519
AcoI YGGCCR 3 cut(s) 33, 188, 282
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 3 cut(s) 377, 639, 965
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 6 cut(s) 68, 338, 347, 652, 711, 788
AfiI CCNNNNNNNGG 4 cut(s) 103, 138, 535, 638
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 7 cut(s) 542, 626, 659, 811, 824, 851, 967
AjnI CCWGG 4 cut(s) 463, 685, 836, 1050
Alw26I GTCTC 3 cut(s) 25, 168, 189
AlwI GGATC 3 cut(s) 314, 467, 519
AlwNI CAGNNNCTG 1 cut(s) 913
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 4 cut(s) 33, 188, 282, 603
ApeKI GCWGC 5 cut(s) 419, 479, 482, 512, 569
ApoI RAATTY 1 cut(s) 994
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 243, 275
AspLEI GCGC 3 cut(s) 403, 671, 820
AspS9I GGNCC 2 cut(s) 214, 244
AsuHPI GGTGA 3 cut(s) 118, 910, 946
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 2 cut(s) 214, 244
BanII GRGCYC 1 cut(s) 308
BbvI GCAGC 5 cut(s) 406, 469, 491, 524, 581
BccI CCATC 3 cut(s) 659, 719, 1034
BceAI ACGGC 1 cut(s) 48
BciT130I CCWGG 4 cut(s) 465, 687, 838, 1052
BcoDI GTCTC 3 cut(s) 25, 168, 189
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 2 cut(s) 483, 510
BfuAI ACCTGC 3 cut(s) 7, 868, 886
BisI GCNGC 8 cut(s) 36, 102, 191, 420, 480, 483, 513, 570
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 8 cut(s) 37, 103, 192, 421, 481, 484, 514, 571
Bme1390I CCNGG 4 cut(s) 465, 687, 838, 1052
Bme18I GGWCC 2 cut(s) 214, 244
BmgT120I GGNCC 2 cut(s) 214, 244
BmiI GGNNCC 2 cut(s) 143, 216
BmrFI CCNGG 4 cut(s) 465, 687, 838, 1052
BmsI GCATC 2 cut(s) 680, 997
BpmI CTGGAG 1 cut(s) 723
Bpu1102I GCTNAGC 1 cut(s) 297
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 996
BsaAI YACGTR 1 cut(s) 749
BsaHI GRCGYC 1 cut(s) 179
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 4 cut(s) 74, 102, 191, 686
BsaWI WCCGGW 1 cut(s) 144
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 138, 535, 638
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 4 cut(s) 465, 687, 838, 1052
BseDI CCNNGG 4 cut(s) 74, 102, 191, 686
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 4 cut(s) 103, 138, 535, 638
BseMII CTCAG 3 cut(s) 179, 311, 990
BseRI GAGGAG 1 cut(s) 1070
BseX3I CGGCCG 2 cut(s) 33, 188
BseXI GCAGC 5 cut(s) 406, 469, 491, 524, 581
BsgI GTGCAG 1 cut(s) 588
Bsh1236I CGCG 5 cut(s) 38, 104, 139, 193, 233
Bsh1285I CGRYCG 2 cut(s) 36, 191
BshFI GGCC 4 cut(s) 35, 190, 284, 605
BsiEI CGRYCG 2 cut(s) 36, 191
BsiSI CCGG 3 cut(s) 145, 221, 476
BslFI GGGAC 1 cut(s) 703
BslI CCNNNNNNNGG 4 cut(s) 103, 138, 535, 638
BsmAI GTCTC 3 cut(s) 25, 168, 189
BsmBI CGTCTC 2 cut(s) 168, 189
BsmFI GGGAC 1 cut(s) 703
BsmI GAATGC 1 cut(s) 403
BsnI GGCC 4 cut(s) 35, 190, 284, 605
Bso31I GGTCTC 1 cut(s) 25
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 308
Bsp13I TCCGGA 1 cut(s) 144
Bsp1407I TGTACA 1 cut(s) 336
Bsp143I GATC 5 cut(s) 319, 472, 524, 735, 969
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 9 cut(s) 36, 102, 104, 139, 191, 193, 218, 247, 719
BspANI GGCC 4 cut(s) 35, 190, 284, 605
BspCNI CTCAG 3 cut(s) 178, 310, 991
BspEI TCCGGA 1 cut(s) 144
BspFNI CGCG 5 cut(s) 38, 104, 139, 193, 233
BspLI GGNNCC 2 cut(s) 143, 216
BspMAI CTGCAG 2 cut(s) 487, 514
BspMI ACCTGC 3 cut(s) 7, 868, 886
BspPI GGATC 3 cut(s) 314, 467, 519
BspQI GCTCTTC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 25
BsrBI CCGCTC 1 cut(s) 719
BsrGI TGTACA 1 cut(s) 336
BssECI CCNNGG 4 cut(s) 74, 102, 191, 686
BssMI GATC 5 cut(s) 319, 472, 524, 735, 969
BssNI GRCGYC 1 cut(s) 179
BssT1I CCWWGG 1 cut(s) 74
Bst2UI CCWGG 4 cut(s) 465, 687, 838, 1052
Bst6I CTCTTC 3 cut(s) 313, 660, 924
BstACI GRCGYC 1 cut(s) 179
BstAUI TGTACA 1 cut(s) 336
BstBAI YACGTR 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 449, 603, 717
BstDEI CTNAG 5 cut(s) 165, 297, 357, 983, 999
BstDSI CCRYGG 2 cut(s) 102, 191
BstF5I GGATG 1 cut(s) 727
BstFNI CGCG 5 cut(s) 38, 104, 139, 193, 233
BstHHI GCGC 3 cut(s) 403, 671, 820
BstKTI GATC 5 cut(s) 322, 475, 527, 738, 972
BstMAI GTCTC 3 cut(s) 25, 168, 189
BstMBI GATC 5 cut(s) 319, 472, 524, 735, 969
BstMCI CGRYCG 2 cut(s) 36, 191
BstMWI GCNNNNNNNGC 1 cut(s) 1022
BstNI CCWGG 4 cut(s) 465, 687, 838, 1052
BstSCI CCNGG 4 cut(s) 463, 685, 836, 1050
BstSFI CTRYAG 2 cut(s) 483, 510
BstUI CGCG 5 cut(s) 38, 104, 139, 193, 233
BstV1I GCAGC 5 cut(s) 406, 469, 491, 524, 581
BstX2I RGATCY 2 cut(s) 472, 524
BstYI RGATCY 2 cut(s) 472, 524
BstZI CGGCCG 2 cut(s) 33, 188
BsuRI GGCC 4 cut(s) 35, 190, 284, 605
BtgI CCRYGG 2 cut(s) 102, 191
BtsCI GGATG 1 cut(s) 727
BveI ACCTGC 3 cut(s) 7, 868, 886
Cac8I GCNNGC 3 cut(s) 449, 603, 717
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 3 cut(s) 403, 671, 820
Cfr13I GGNCC 2 cut(s) 214, 244
Cfr42I CCGCGG 2 cut(s) 105, 194
CseI GACGC 1 cut(s) 239
Csp6I GTAC 6 cut(s) 67, 337, 346, 651, 710, 787
CviAII CATG 2 cut(s) 98, 977
CviQI GTAC 6 cut(s) 67, 337, 346, 651, 710, 787
DdeI CTNAG 5 cut(s) 165, 297, 357, 983, 999
DpnI GATC 5 cut(s) 321, 474, 526, 737, 971
DpnII GATC 5 cut(s) 319, 472, 524, 735, 969
EaeI YGGCCR 3 cut(s) 33, 188, 282
EagI CGGCCG 2 cut(s) 33, 188
Eam1104I CTCTTC 3 cut(s) 313, 660, 924
EarI CTCTTC 3 cut(s) 313, 660, 924
EclXI CGGCCG 2 cut(s) 33, 188
Eco130I CCWWGG 1 cut(s) 74
Eco24I GRGCYC 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 214, 244
Eco52I CGGCCG 2 cut(s) 33, 188
Eco57I CTGAAG 3 cut(s) 377, 639, 965
EcoRII CCWGG 4 cut(s) 463, 685, 836, 1050
EcoT14I CCWWGG 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 308
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 2 cut(s) 168, 189
FaeI CATG 2 cut(s) 101, 980
FaqI GGGAC 1 cut(s) 703
FatI CATG 2 cut(s) 97, 976
FauI CCCGC 1 cut(s) 225
FblI GTMKAC 1 cut(s) 917
Fnu4HI GCNGC 8 cut(s) 36, 102, 191, 420, 480, 483, 513, 570
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 308
Fsp4HI GCNGC 8 cut(s) 36, 102, 191, 420, 480, 483, 513, 570
FspBI CTAG 1 cut(s) 470
GlaI GCGC 3 cut(s) 402, 670, 819
GluI GCNGC 8 cut(s) 36, 102, 191, 420, 480, 483, 513, 570
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 4 cut(s) 35, 190, 284, 605
HapII CCGG 3 cut(s) 145, 221, 476
HgaI GACGC 1 cut(s) 239
HhaI GCGC 3 cut(s) 403, 671, 820
Hin1I GRCGYC 1 cut(s) 179
Hin1II CATG 2 cut(s) 101, 980
Hin6I GCGC 3 cut(s) 401, 669, 818
HinP1I GCGC 3 cut(s) 401, 669, 818
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 4 cut(s) 40, 148, 542, 857
HpaII CCGG 3 cut(s) 145, 221, 476
HphI GGTGA 3 cut(s) 118, 910, 946
Hpy166II GTNNAC 4 cut(s) 337, 389, 743, 918
Hpy188I TCNGA 6 cut(s) 47, 168, 396, 547, 583, 1000
Hpy188III TCNNGA 4 cut(s) 145, 470, 594, 967
Hpy8I GTNNAC 4 cut(s) 337, 389, 743, 918
Hpy99I CGWCG 4 cut(s) 181, 184, 263, 266
HpyAV CCTTC 6 cut(s) 220, 482, 600, 746, 940, 973
HpyCH4IV ACGT 5 cut(s) 93, 179, 258, 497, 748
HpyCH4V TGCA 5 cut(s) 485, 512, 569, 767, 877
HpyF10VI GCNNNNNNNGC 1 cut(s) 1022
HpyF3I CTNAG 5 cut(s) 165, 297, 357, 983, 999
HpySE526I ACGT 5 cut(s) 93, 179, 258, 497, 748
Hsp92I GRCGYC 1 cut(s) 179
Hsp92II CATG 2 cut(s) 101, 980
HspAI GCGC 3 cut(s) 401, 669, 818
Kpn2I TCCGGA 1 cut(s) 144
KspI CCGCGG 2 cut(s) 105, 194
Kzo9I GATC 5 cut(s) 319, 472, 524, 735, 969
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 2 cut(s) 704, 988
Lsp1109I GCAGC 5 cut(s) 406, 469, 491, 524, 581
LweI GCATC 2 cut(s) 680, 997
MaeI CTAG 1 cut(s) 470
MaeII ACGT 5 cut(s) 93, 179, 258, 497, 748
MaeIII GTNAC 1 cut(s) 1061
MalI GATC 5 cut(s) 321, 474, 526, 737, 971
MbiI CCGCTC 1 cut(s) 719
MboI GATC 5 cut(s) 319, 472, 524, 735, 969
MboII GAAGA 6 cut(s) 208, 211, 300, 647, 941, 949
MflI RGATCY 2 cut(s) 472, 524
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 3 cut(s) 561, 659, 994
MluI ACGCGT 1 cut(s) 231
MlyI GAGTC 2 cut(s) 142, 851
MnlI CCTC 5 cut(s) 333, 529, 925, 994, 1048
MroI TCCGGA 1 cut(s) 144
MspA1I CMGCKG 4 cut(s) 104, 193, 482, 695
MspI CCGG 3 cut(s) 145, 221, 476
MspR9I CCNGG 4 cut(s) 465, 687, 838, 1052
Mva1269I GAATGC 1 cut(s) 403
MvaI CCWGG 4 cut(s) 465, 687, 838, 1052
MvnI CGCG 5 cut(s) 38, 104, 139, 193, 233
MwoI GCNNNNNNNGC 1 cut(s) 1022
NdeII GATC 5 cut(s) 319, 472, 524, 735, 969
NlaIII CATG 2 cut(s) 101, 980
NlaIV GGNNCC 2 cut(s) 143, 216
NmeAIII GCCGAG 2 cut(s) 166, 808
NmuCI GTSAC 1 cut(s) 1061
NspV TTCGAA 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 313
PctI GAATGC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 40, 542
PflFI GACNNNGTC 1 cut(s) 181
PfoI TCCNGGA 2 cut(s) 836, 1050
PkrI GCNGC 8 cut(s) 37, 103, 192, 421, 481, 484, 514, 571
PleI GAGTC 2 cut(s) 142, 851
PpsI GAGTC 2 cut(s) 142, 851
Ppu21I YACGTR 1 cut(s) 749
Psp6I CCWGG 4 cut(s) 463, 685, 836, 1050
PspGI CCWGG 4 cut(s) 463, 685, 836, 1050
PspN4I GGNNCC 2 cut(s) 143, 216
PspPI GGNCC 2 cut(s) 214, 244
PstI CTGCAG 2 cut(s) 487, 514
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 2 cut(s) 472, 524
PsyI GACNNNGTC 1 cut(s) 181
PvuII CAGCTG 2 cut(s) 482, 695
RsaI GTAC 6 cut(s) 68, 338, 347, 652, 711, 788
RsaNI GTAC 6 cut(s) 67, 337, 346, 651, 710, 787
SacII CCGCGG 2 cut(s) 105, 194
SapI GCTCTTC 1 cut(s) 313
SatI GCNGC 8 cut(s) 36, 102, 191, 420, 480, 483, 513, 570
Sau3AI GATC 5 cut(s) 319, 472, 524, 735, 969
Sau96I GGNCC 2 cut(s) 214, 244
SchI GAGTC 2 cut(s) 142, 851
ScrFI CCNGG 4 cut(s) 465, 687, 838, 1052
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 2 cut(s) 680, 997
SfcI CTRYAG 2 cut(s) 483, 510
Sfr303I CCGCGG 2 cut(s) 105, 194
SfuI TTCGAA 1 cut(s) 123
SgrBI CCGCGG 2 cut(s) 105, 194
SinI GGWCC 2 cut(s) 214, 244
SmlI CTYRAG 1 cut(s) 1011
SmoI CTYRAG 1 cut(s) 1011
Sse9I AATT 3 cut(s) 561, 659, 994
SsiI CCGC 9 cut(s) 36, 102, 104, 139, 191, 193, 218, 247, 719
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 4 cut(s) 463, 685, 836, 1050
StyI CCWWGG 1 cut(s) 74
TaiI ACGT 5 cut(s) 96, 182, 261, 500, 751
TaqI TCGA 3 cut(s) 89, 123, 311
TasI AATT 3 cut(s) 561, 659, 994
TatI WGTACW 3 cut(s) 336, 650, 709
TauI GCSGC 3 cut(s) 38, 104, 193
TfiI GAWTC 2 cut(s) 40, 542
TseFI GTSAC 1 cut(s) 1061
TseI GCWGC 5 cut(s) 419, 479, 482, 512, 569
Tsp45I GTSAC 1 cut(s) 1061
TspDTI ATGAA 3 cut(s) 17, 443, 942
TspGWI ACGGA 1 cut(s) 565
Tth111I GACNNNGTC 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 214, 244
XapI RAATTY 1 cut(s) 994
XbaI TCTAGA 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 917
XspI CTAG 1 cut(s) 470
ZraI GACGTC 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.