Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Reverse (-)

7925013 .. 7927220

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00166470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAACAGCTTGTCGCAGGTCTCATCCTACACGGCGGCGATTTTCCGAACAACAGGTCGTTCATTCGGGACCGGTGCTCTGTACGGACCCTGGAAGCGAAAATTGGACGTCTACGCTGGGGTGAAGCTAATCAGCTTTGAATCGGCGGTTTCCAGATTCCGGACTCAGCTCTACTCGTCTGAGAGCAAAGCGACGTCGTCTCGGCTGCGGAAGAAGAAGTCAGCACCCGAACGAGTTATGGACCCGGAAAAGGACGCATTCTATGTAGTCCGCAAAGGAAATGTCGTCGGTGTCTATAAGAGCTTCGCTGATTGCCAAGCTGAGCAAGGCTCTTCGATATGTGATCCTCCTATTAGTGTGTACAAAGGGTACTCTATGCCTAAGAAGGATGAACAATATCTTGCTTCCTGTGGACTTCAGAATGCGCTTTACACTATTTCAGCTGCAGATATGAAAGATGAGCTTTTTGGCAGGCTTGTGGACTGTTCTCTTGGAGTAAGATTCGACTGCTTGCTAGCTTTTTCGGATGAGAAATGTTTCGTTTTGAGCAAAGAGGAATTCTTGATCCAGCATCTTCAAAAGGCGAAACATCTGATAAGACTGCAGCCAACAAGAAATCCCACCCAAGAAATTGGTTCAACTTCTGTATCAGATACTCCTTCCAGAAAGCAGGCCAAGAAAATGGCTGAAGTTGAAGTTCCCCCTTCTGGCCGTGGCTGTACTCTTCAATTTGATGGTGCATCAAAAGGAAATCCTGGAGTAGCTGGTGCTGGAGCTGTACTGCGAGCAGATGATGGAACCTTGTTTACTGCCATTGGGGCTGCTTATAACATTCTGACAAGTTCTTGTATTCCTGTAAAGGAGCTAAATTCTGAGGCAGATGCTCAAGCAAACTTGGCAATCACTCTTGCCGGTGGGTTTTTCAAATTTGACTTTGCATTTATGCAGTTACTAGATTCTTTAAACGTTCAAATGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

326

Amino Acids

35.49

Weight (kDa)

8.89

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AatII	GACGTC	2 cut(s)	111, 197
Acc36I	ACCTGC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	4 cut(s)	35, 146, 208, 271
AclI	AACGTT	1 cut(s)	966
AclWI	GGATC	2 cut(s)	338, 559
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	3 cut(s)	557, 868, 926
AcuI	CTGAAG	2 cut(s)	401, 708
AcyI	GRCGYC	2 cut(s)	108, 194
AfaI	GTAC	5 cut(s)	83, 362, 371, 721, 780
AfiI	CCNNNNNNNGG	3 cut(s)	159, 250, 707
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	7 cut(s)	140, 578, 639, 695, 728, 925, 971
AjnI	CCWGG	2 cut(s)	89, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	25, 204
AlwI	GGATC	2 cut(s)	338, 559
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	2 cut(s)	672, 709
ApeKI	GCWGC	4 cut(s)	205, 443, 604, 821
ApoI	RAATTY	3 cut(s)	557, 868, 926
ArsI	GACNNNNNNTTYG	4 cut(s)	40, 72, 267, 299
AsiGI	ACCGGT	1 cut(s)	71
Asp700I	GAANNNNTTC	1 cut(s)	536
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	3 cut(s)	69, 86, 241
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	133
AsuNHI	GCTAGC	1 cut(s)	514
AvaII	GGWCC	3 cut(s)	69, 86, 241
BaeI	ACNNNNGTAYC	2 cut(s)	630, 663
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	4 cut(s)	192, 430, 616, 808
BccI	CCATC	2 cut(s)	728, 788
BceAI	ACGGC	2 cut(s)	48, 696
BciT130I	CCWGG	2 cut(s)	91, 756
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	25, 204
BfaI	CTAG	2 cut(s)	515, 953
BfmI	CTRYAG	2 cut(s)	444, 602
BfuAI	ACCTGC	1 cut(s)	7
BglI	GCCNNNNNGGC	1 cut(s)	818
BisI	GCNGC	5 cut(s)	36, 206, 444, 605, 822
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	37, 207, 445, 606, 823
Bme1390I	CCNGG	3 cut(s)	91, 245, 756
Bme18I	GGWCC	3 cut(s)	69, 86, 241
BmgT120I	GGNCC	3 cut(s)	69, 86, 241
BmiI	GGNNCC	4 cut(s)	70, 88, 243, 799
BmrFI	CCNGG	3 cut(s)	91, 245, 756
BmsI	GCATC	3 cut(s)	580, 749, 871
BmtI	GCTAGC	1 cut(s)	518
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	777, 792
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	870
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	108, 194
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	2 cut(s)	89, 712
BsaWI	WCCGGW	2 cut(s)	71, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 250, 707
Bse118I	RCCGGY	2 cut(s)	71, 911
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	91, 756
BseDI	CCNNGG	2 cut(s)	89, 712
BseGI	GGATG	3 cut(s)	23, 394, 532
BseLI	CCNNNNNNNGG	3 cut(s)	159, 250, 707
BseMII	CTCAG	4 cut(s)	171, 179, 312, 864
BseXI	GCAGC	4 cut(s)	192, 430, 616, 808
BseYI	CCCAGC	1 cut(s)	116
BshFI	GGCC	2 cut(s)	674, 711
BshTI	ACCGGT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	4 cut(s)	72, 160, 245, 912
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	3 cut(s)	159, 250, 707
BsmAI	GTCTC	2 cut(s)	25, 204
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	2 cut(s)	257, 427
BsnI	GGCC	2 cut(s)	674, 711
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	2 cut(s)	343, 564
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	4 cut(s)	35, 146, 208, 271
BspANI	GGCC	2 cut(s)	674, 711
BspCNI	CTCAG	4 cut(s)	172, 178, 313, 865
BspEI	TCCGGA	1 cut(s)	159
BspLI	GGNNCC	4 cut(s)	70, 88, 243, 799
BspMAI	CTGCAG	2 cut(s)	448, 606
BspMI	ACCTGC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	518
BspPI	GGATC	2 cut(s)	338, 559
BspQI	GCTCTTC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	2 cut(s)	71, 911
BsrGI	TGTACA	1 cut(s)	360
BssAI	RCCGGY	2 cut(s)	71, 911
BssECI	CCNNGG	2 cut(s)	89, 712
BssMI	GATC	2 cut(s)	343, 564
BssNI	GRCGYC	2 cut(s)	108, 194
Bst2UI	CCWGG	2 cut(s)	91, 756
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	337, 729
BstACI	GRCGYC	2 cut(s)	108, 194
BstAUI	TGTACA	1 cut(s)	360
BstC8I	GCNNGC	5 cut(s)	473, 512, 516, 672, 786
BstDEI	CTNAG	5 cut(s)	165, 180, 321, 381, 873
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	3 cut(s)	23, 394, 532
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	346, 567
BstMAI	GTCTC	2 cut(s)	25, 204
BstMBI	GATC	2 cut(s)	343, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	818, 896
BstNI	CCWGG	2 cut(s)	91, 756
BstSCI	CCNGG	3 cut(s)	89, 243, 754
BstSFI	CTRYAG	2 cut(s)	444, 602
BstV1I	GCAGC	4 cut(s)	192, 430, 616, 808
BstXI	CCANNNNNNTGG	2 cut(s)	632, 682
BsuRI	GGCC	2 cut(s)	674, 711
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	23, 394, 532
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	5 cut(s)	473, 512, 516, 672, 786
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	2 cut(s)	71, 911
Cfr13I	GGNCC	3 cut(s)	69, 86, 241
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	5 cut(s)	82, 361, 370, 720, 779
CspAI	ACCGGT	1 cut(s)	71
CviQI	GTAC	5 cut(s)	82, 361, 370, 720, 779
DdeI	CTNAG	5 cut(s)	165, 180, 321, 381, 873
DpnI	GATC	2 cut(s)	345, 566
DpnII	GATC	2 cut(s)	343, 564
DraI	TTTAAA	1 cut(s)	963
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	337, 729
EarI	CTCTTC	2 cut(s)	337, 729
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	3 cut(s)	69, 86, 241
Eco57I	CTGAAG	2 cut(s)	401, 708
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	89, 754
Esp3I	CGTCTC	1 cut(s)	204
FaiI	YATR	8 cut(s)	239, 264, 297, 340, 377, 452, 828, 944
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FaqI	GGGAC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	5 cut(s)	36, 206, 444, 605, 822
FokI	GGATG	3 cut(s)	10, 401, 539
Fsp4HI	GCNGC	5 cut(s)	36, 206, 444, 605, 822
FspBI	CTAG	2 cut(s)	515, 953
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	5 cut(s)	36, 206, 444, 605, 822
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	777, 792
HaeIII	GGCC	2 cut(s)	674, 711
HapII	CCGG	4 cut(s)	72, 160, 245, 912
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	2 cut(s)	108, 194
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	5 cut(s)	140, 156, 163, 501, 956
HpaII	CCGG	4 cut(s)	72, 160, 245, 912
HphI	GGTGA	1 cut(s)	133
Hpy166II	GTNNAC	5 cut(s)	112, 361, 413, 481, 807
Hpy188I	TCNGA	8 cut(s)	47, 181, 420, 526, 594, 652, 837, 874
Hpy188III	TCNNGA	5 cut(s)	67, 153, 160, 562, 663
Hpy8I	GTNNAC	5 cut(s)	112, 361, 413, 481, 807
Hpy99I	CGWCG	3 cut(s)	196, 199, 290
HpyAV	CCTTC	3 cut(s)	379, 669, 714
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	3 cut(s)	108, 194, 966
HpyCH4V	TGCA	5 cut(s)	446, 604, 740, 938, 946
HpyF10VI	GCNNNNNNNGC	2 cut(s)	818, 896
HpyF3I	CTNAG	5 cut(s)	165, 180, 321, 381, 873
HpySE526I	ACGT	3 cut(s)	108, 194, 966
Hsp92I	GRCGYC	2 cut(s)	108, 194
HspAI	GCGC	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	343, 564
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	773, 862
Lsp1109I	GCAGC	4 cut(s)	192, 430, 616, 808
LweI	GCATC	3 cut(s)	580, 749, 871
MaeI	CTAG	2 cut(s)	515, 953
MaeII	ACGT	3 cut(s)	108, 194, 966
MaeIII	GTNAC	1 cut(s)	948
MalI	GATC	2 cut(s)	345, 566
MboI	GATC	2 cut(s)	343, 564
MboII	GAAGA	5 cut(s)	223, 226, 324, 566, 716
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	6 cut(s)	101, 557, 630, 728, 868, 926
MlyI	GAGTC	1 cut(s)	157
MnlI	CCTC	3 cut(s)	357, 547, 868
MroI	TCCGGA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	536
MseI	TTAA	1 cut(s)	962
MspA1I	CMGCKG	1 cut(s)	443
MspI	CCGG	4 cut(s)	72, 160, 245, 912
MspR9I	CCNGG	3 cut(s)	91, 245, 756
Mva1269I	GAATGC	2 cut(s)	257, 427
MvaI	CCWGG	2 cut(s)	91, 756
MwoI	GCNNNNNNNGC	2 cut(s)	818, 896
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	2 cut(s)	343, 564
NheI	GCTAGC	1 cut(s)	514
NlaIV	GGNNCC	4 cut(s)	70, 88, 243, 799
NmeAIII	GCCGAG	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	337
PctI	GAATGC	2 cut(s)	257, 427
PdmI	GAANNNNTTC	1 cut(s)	536
PfeI	GAWTC	4 cut(s)	140, 156, 501, 956
PflFI	GACNNNGTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	754
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	37, 207, 445, 606, 823
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	966
Psp6I	CCWGG	2 cut(s)	89, 754
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	2 cut(s)	89, 754
PspN4I	GGNNCC	4 cut(s)	70, 88, 243, 799
PspPI	GGNCC	3 cut(s)	69, 86, 241
PsrI	GAACNNNNNNTAC	2 cut(s)	790, 822
PstI	CTGCAG	2 cut(s)	448, 606
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	5 cut(s)	83, 362, 371, 721, 780
RsaNI	GTAC	5 cut(s)	82, 361, 370, 720, 779
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	1 cut(s)	962
SatI	GCNGC	5 cut(s)	36, 206, 444, 605, 822
Sau3AI	GATC	2 cut(s)	343, 564
Sau96I	GGNCC	3 cut(s)	69, 86, 241
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	3 cut(s)	91, 245, 756
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	3 cut(s)	580, 749, 871
SfcI	CTRYAG	2 cut(s)	444, 602
SinI	GGWCC	3 cut(s)	69, 86, 241
SmlI	CTYRAG	1 cut(s)	885
SmoI	CTYRAG	1 cut(s)	885
Sse9I	AATT	6 cut(s)	101, 557, 630, 728, 868, 926
SsiI	CCGC	4 cut(s)	35, 146, 208, 271
SspMI	CTAG	2 cut(s)	515, 953
StyD4I	CCNGG	3 cut(s)	89, 243, 754
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	3 cut(s)	111, 197, 969
TaqI	TCGA	2 cut(s)	335, 504
TasI	AATT	6 cut(s)	101, 557, 630, 728, 868, 926
TatI	WGTACW	3 cut(s)	360, 719, 778
TauI	GCSGC	1 cut(s)	38
TfiI	GAWTC	4 cut(s)	140, 156, 501, 956
Tru1I	TTAA	1 cut(s)	962
Tru9I	TTAA	1 cut(s)	962
TseI	GCWGC	4 cut(s)	205, 443, 604, 821
TspDTI	ATGAA	4 cut(s)	17, 51, 405, 467
TspGWI	ACGGA	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	3 cut(s)	69, 86, 241
XapI	RAATTY	3 cut(s)	557, 868, 926
XmiI	GTMKAC	1 cut(s)	111
XmnI	GAANNNNTTC	1 cut(s)	536
XspI	CTAG	2 cut(s)	515, 953
ZraI	GACGTC	2 cut(s)	109, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.