Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Forward (+)

64177510 .. 64181968

Gene Structure 4459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00384990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGAACTTCTCGTCACACGTTTCGTACACGACGGGTCGTTTTTTCGCCACCAGTTCTTCTCCTTTTTCTTCCTGGAGAACAAAACCGAACCTTTCAGCTGGAATTAAGTCAATTCCCGTTGGATTAGCGTTGACCAGAGTCCATGCTCAGCTTCGAAGTAATGGCCGCAGCAGCGGCGGCAAAACGACGTCGTGTTGTGCTCAGACGAACGCAATGGGAGTGGAAAAAGAAGCGTTCTATTTAGTCCGGAAAGGAGATATTGTTGGCGTGTATAAGAATTTCGGTGACTGTGAGGCGCAGATTGGTTCTACGATATGTGATCCTCCTGTTAGTGTGTACAAAGGTTACTGCTTGCCTAAGGACACTGAAGAACATCTTGTATCTTTTGGACTTGCCAATGCCATTTACACAATCAGAGCTGAAGATTTGAAGCAGGACCATTTCGGCAAGCTCATGCTTTGCCCTTTTCATGAGCCAGCACCTTTAGAATGTGAAGAATCTGTCACGGATACATCTGTAAACAGTTCAGATGAAGTGCCTGGATCAGAAAATGTGGGGCTTGTGTACTCTCTCGAGTTCGATGGTGCATCAAAAGGAAATCCTGGACTAGCTGGTGCTGGAGCTGTGCTGCGGGCTGATGATGGAGGTTTGATCTGTAAAGTTCACGAAGGTCTGGGTATTAAGACCAATAATGTTGCTGAGTACCGAGCTCTGATTTTAGGGTTAAAATGTGCTCTCAAGAAAGGTTTTACCAAGATTCGAGTCCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCAAGGTTTATGGAAGGTCAAAAACCAGAATCTGTCTGATTTGTGTGAAGAGGTGAAGGAACTGAAAGAAAAATTTGTGTCCTTTGAGATCAGTCATGTTCTGAGGGACAAAAATTCAGAGGCAGATGCTCAAGCAAACTTGGCAGTTCGTCTTAGTGCAGTAAAGCGTCTATTTTCTTCTAGGCCGTCTTCCTCCGACGTCGTTTCGAGCACGGCTGCTGACCTTGCCGGCGTCGGCGATGATGATGATGAAGATGGGCCCGTCTACTCTAACCCAGCTTCTTCTGCATCGGAGGCCGTTTTGCTACCCACTCTGCTTCAGCCACGTGTGGTGGTCTTCGATGGGGTCTGCCATCTCTGCCATGGAGGGGTGAAGTGGGTGATTAAGGCAGACAAGCACAGGAAGATCAAATTCTGCTGCCTACAGTCTGAGACAGCTGAGCCGTATCTGAGATTGTGTGGGCTTGATCGAGAGGATGTTCTTCGTCGATTTTTGTTTGTTGAAGGCCCTGGGCTGTATCACCAAGGCTCCACTGCTGCGCTGAAAGTATTGTCATACTTGCCTCTCCCTTACTCTGCTTTAAGCACACTCATGGTAGTCCCAACTCCTTTGAGAGAAATTGTCTATGATTATGTTGCGAAACGACGCTATGACTGGTTTGGCAAGTCTGAAGATTGCTTGGTTTTGAAAGAGAAAGAGTTGCTCGAGCGTTTCATAGATAGGGAAGAGTTAATGGCTCGAGGTCGATCAGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

518

Amino Acids

56.72

Weight (kDa)

6.44

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	193 - 313	1e-27	Reverse transcriptase-like
RNase_H	PF00075	194 - 294	1.6e-08	RNase H
DCC1-like	PF04134	377 - 488	3.8e-25	DCC1-like thiol-disulfide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	191, 999
Acc36I	ACCTGC	1 cut(s)	784
AccI	GTMKAC	1 cut(s)	1062
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	4 cut(s)	166, 174, 177, 631
AclWI	GGATC	2 cut(s)	314, 550
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	4 cut(s)	277, 869, 910, 1208
AcuI	CTGAAG	4 cut(s)	387, 441, 1100, 1488
AcvI	CACGTG	1 cut(s)	1124
AcyI	GRCGYC	3 cut(s)	188, 996, 1029
AfaI	GTAC	4 cut(s)	26, 338, 566, 704
AfiI	CCNNNNNNNGG	1 cut(s)	1165
AflIII	ACRYGT	2 cut(s)	16, 1123
AgsI	TTSAA	4 cut(s)	430, 800, 1301, 1486
AjnI	CCWGG	5 cut(s)	71, 538, 601, 765, 1306
AluBI	AGCT	9 cut(s)	98, 151, 419, 451, 611, 623, 710, 1076, 1235
AluI	AGCT	9 cut(s)	98, 151, 419, 451, 611, 623, 710, 1076, 1235
Alw21I	GWGCWC	4 cut(s)	202, 712, 736, 1010
Alw26I	GTCTC	1 cut(s)	1223
AlwI	GGATC	2 cut(s)	314, 550
AlwNI	CAGNNNCTG	1 cut(s)	829
Ama87I	CYCGRG	3 cut(s)	572, 1502, 1536
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	5 cut(s)	163, 980, 1055, 1092, 1303
ApaI	GGGCCC	1 cut(s)	1059
ApeKI	GCWGC	6 cut(s)	168, 171, 628, 1013, 1215, 1334
ApoI	RAATTY	4 cut(s)	277, 869, 910, 1208
AspLEI	GCGC	2 cut(s)	298, 1339
AspS9I	GGNCC	4 cut(s)	436, 1055, 1056, 1304
AsuHPI	GGTGA	6 cut(s)	296, 782, 862, 1180, 1189, 1310
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	3 cut(s)	572, 1502, 1536
AvaII	GGWCC	1 cut(s)	436
AxyI	CCTNAGG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	1059
BaeI	ACNNNNGTAYC	2 cut(s)	501, 534
BanII	GRGCYC	2 cut(s)	712, 1059
BbrPI	CACGTG	1 cut(s)	1124
BbsI	GAAGAC	2 cut(s)	978, 1126
Bbv12I	GWGCWC	4 cut(s)	202, 712, 736, 1010
BbvI	GCAGC	6 cut(s)	180, 183, 615, 1000, 1202, 1321
BccI	CCATC	5 cut(s)	575, 635, 1046, 1133, 1158
BceAI	ACGGC	4 cut(s)	967, 1026, 1079, 1225
BciT130I	CCWGG	5 cut(s)	73, 540, 603, 767, 1308
BciVI	GTATCC	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	1223
BfaI	CTAG	2 cut(s)	608, 978
BfmI	CTRYAG	1 cut(s)	1220
BfuAI	ACCTGC	1 cut(s)	784
BfuI	GTATCC	1 cut(s)	502
BisI	GCNGC	9 cut(s)	166, 169, 172, 175, 178, 629, 1014, 1216, 1335
BlpI	GCTNAGC	2 cut(s)	147, 1236
BlsI	GCNGC	9 cut(s)	167, 170, 173, 176, 179, 630, 1015, 1217, 1336
Bme1390I	CCNGG	5 cut(s)	73, 540, 603, 767, 1308
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	3 cut(s)	572, 1502, 1536
BmgT120I	GGNCC	4 cut(s)	436, 1055, 1056, 1304
BmiI	GGNNCC	2 cut(s)	1057, 1327
BmrFI	CCNGG	5 cut(s)	73, 540, 603, 767, 1308
BmsI	GCATC	3 cut(s)	596, 913, 1094
BoxI	GACNNNNGTC	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	978, 1126
BpmI	CTGGAG	2 cut(s)	94, 639
Bpu1102I	GCTNAGC	2 cut(s)	147, 1236
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	722, 912
BsaAI	YACGTR	1 cut(s)	1124
BsaHI	GRCGYC	3 cut(s)	188, 996, 1029
BsaJI	CCNNGG	5 cut(s)	766, 1159, 1306, 1307, 1321
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 1310, 1340
Bsc4I	CCNNNNNNNGG	1 cut(s)	1165
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	2 cut(s)	51, 1457
Bse21I	CCTNAGG	1 cut(s)	357
Bse3DI	GCAATG	1 cut(s)	219
BseAI	TCCGGA	1 cut(s)	246
BseBI	CCWGG	5 cut(s)	73, 540, 603, 767, 1308
BseDI	CCNNGG	5 cut(s)	766, 1159, 1306, 1307, 1321
BseGI	GGATG	1 cut(s)	1279
BseLI	CCNNNNNNNGG	1 cut(s)	1165
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	7 cut(s)	161, 215, 690, 890, 1218, 1227, 1238
BseNI	ACTGG	2 cut(s)	51, 1457
BseSI	GKGCMC	1 cut(s)	1059
BseXI	GCAGC	6 cut(s)	180, 183, 615, 1000, 1202, 1321
BseYI	CCCAGC	1 cut(s)	1072
BsgI	GTGCAG	1 cut(s)	975
BshFI	GGCC	5 cut(s)	165, 982, 1057, 1094, 1305
BsiHKAI	GWGCWC	4 cut(s)	202, 712, 736, 1010
BsiHKCI	CYCGRG	3 cut(s)	572, 1502, 1536
BsiSI	CCGG	2 cut(s)	247, 1026
BslFI	GGGAC	2 cut(s)	917, 1382
BslI	CCNNNNNNNGG	1 cut(s)	1165
BsmAI	GTCTC	1 cut(s)	1223
BsmFI	GGGAC	2 cut(s)	917, 1382
BsnI	GGCC	5 cut(s)	165, 982, 1057, 1094, 1305
BsoBI	CYCGRG	3 cut(s)	572, 1502, 1536
Bsp119I	TTCGAA	1 cut(s)	154
Bsp120I	GGGCCC	1 cut(s)	1055
Bsp1286I	GDGCHC	5 cut(s)	202, 712, 736, 1010, 1059
Bsp13I	TCCGGA	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	336
Bsp143I	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
Bsp1720I	GCTNAGC	2 cut(s)	147, 1236
Bsp19I	CCATGG	1 cut(s)	1159
BspACI	CCGC	4 cut(s)	166, 174, 177, 631
BspANI	GGCC	5 cut(s)	165, 982, 1057, 1094, 1305
BspCNI	CTCAG	7 cut(s)	160, 214, 691, 891, 1219, 1228, 1239
BspEI	TCCGGA	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	469
BspLI	GGNNCC	2 cut(s)	1057, 1327
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	2 cut(s)	314, 550
BspT104I	TTCGAA	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	219
BsrFI	RCCGGY	1 cut(s)	1025
BsrGI	TGTACA	1 cut(s)	336
BsrI	ACTGG	2 cut(s)	51, 1457
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	5 cut(s)	766, 1159, 1306, 1307, 1321
BssMI	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
BssNI	GRCGYC	3 cut(s)	188, 996, 1029
BssT1I	CCWWGG	2 cut(s)	1159, 1321
Bst2UI	CCWGG	5 cut(s)	73, 540, 603, 767, 1308
Bst4CI	ACNGT	3 cut(s)	290, 524, 1224
Bst6I	CTCTTC	2 cut(s)	840, 1518
BstACI	GRCGYC	3 cut(s)	188, 996, 1029
BstAUI	TGTACA	1 cut(s)	336
BstBAI	YACGTR	1 cut(s)	1124
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	5 cut(s)	353, 449, 477, 633, 1027
BstDEI	CTNAG	9 cut(s)	147, 201, 357, 699, 899, 950, 1227, 1236, 1247
BstDSI	CCRYGG	1 cut(s)	1159
BstF5I	GGATG	1 cut(s)	1279
BstHHI	GCGC	2 cut(s)	298, 1339
BstKTI	GATC	7 cut(s)	322, 545, 654, 888, 1206, 1267, 1547
BstMAI	GTCTC	1 cut(s)	1223
BstMBI	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
BstMWI	GCNNNNNNNGC	8 cut(s)	171, 174, 177, 938, 1022, 1082, 1091, 1155
BstNI	CCWGG	5 cut(s)	73, 540, 603, 767, 1308
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	5 cut(s)	71, 538, 601, 765, 1306
BstSFI	CTRYAG	1 cut(s)	1220
BstSLI	GKGCMC	1 cut(s)	1059
BstV1I	GCAGC	6 cut(s)	180, 183, 615, 1000, 1202, 1321
BstV2I	GAAGAC	2 cut(s)	978, 1126
Bsu36I	CCTNAGG	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	5 cut(s)	165, 982, 1057, 1094, 1305
BtgI	CCRYGG	1 cut(s)	1159
BtgZI	GCGATG	1 cut(s)	1050
BtsCI	GGATG	1 cut(s)	1279
BtsI	GCAGTG	1 cut(s)	1329
BtsIMutI	CAGTG	2 cut(s)	363, 1329
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	5 cut(s)	353, 449, 477, 633, 1027
CaiI	CAGNNNCTG	1 cut(s)	829
CciI	TCATGA	1 cut(s)	469
CfoI	GCGC	2 cut(s)	298, 1339
Cfr10I	RCCGGY	1 cut(s)	1025
Cfr13I	GGNCC	4 cut(s)	436, 1055, 1056, 1304
CseI	GACGC	3 cut(s)	953, 1018, 1452
Csp6I	GTAC	4 cut(s)	25, 337, 565, 703
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	6 cut(s)	143, 454, 470, 893, 1160, 1390
CviQI	GTAC	4 cut(s)	25, 337, 565, 703
DdeI	CTNAG	9 cut(s)	147, 201, 357, 699, 899, 950, 1227, 1236, 1247
DpnI	GATC	7 cut(s)	321, 544, 653, 887, 1205, 1266, 1546
DpnII	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
EaeI	YGGCCR	1 cut(s)	163
Eam1104I	CTCTTC	2 cut(s)	840, 1518
EarI	CTCTTC	2 cut(s)	840, 1518
Ecl136II	GAGCTC	1 cut(s)	710
Eco130I	CCWWGG	2 cut(s)	1159, 1321
Eco24I	GRGCYC	2 cut(s)	712, 1059
Eco47I	GGWCC	1 cut(s)	436
Eco53kI	GAGCTC	1 cut(s)	710
Eco57I	CTGAAG	4 cut(s)	387, 441, 1100, 1488
Eco72I	CACGTG	1 cut(s)	1124
Eco81I	CCTNAGG	1 cut(s)	357
Eco88I	CYCGRG	3 cut(s)	572, 1502, 1536
EcoICRI	GAGCTC	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	1304
EcoRII	CCWGG	5 cut(s)	71, 538, 601, 765, 1306
EcoT14I	CCWWGG	2 cut(s)	1159, 1321
EcoT38I	GRGCYC	2 cut(s)	712, 1059
ErhI	CCWWGG	2 cut(s)	1159, 1321
FaeI	CATG	6 cut(s)	146, 457, 473, 896, 1163, 1393
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FaqI	GGGAC	2 cut(s)	917, 1382
FatI	CATG	6 cut(s)	142, 453, 469, 892, 1159, 1389
FauI	CCCGC	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	1062
Fnu4HI	GCNGC	9 cut(s)	166, 169, 172, 175, 178, 629, 1014, 1216, 1335
FokI	GGATG	1 cut(s)	1286
FriOI	GRGCYC	2 cut(s)	712, 1059
Fsp4HI	GCNGC	9 cut(s)	166, 169, 172, 175, 178, 629, 1014, 1216, 1335
FspBI	CTAG	2 cut(s)	608, 978
GlaI	GCGC	2 cut(s)	297, 1338
GluI	GCNGC	9 cut(s)	166, 169, 172, 175, 178, 629, 1014, 1216, 1335
GsaI	CCCAGC	1 cut(s)	1076
GsuI	CTGGAG	2 cut(s)	94, 639
HaeIII	GGCC	5 cut(s)	165, 982, 1057, 1094, 1305
HapII	CCGG	2 cut(s)	247, 1026
HgaI	GACGC	3 cut(s)	953, 1018, 1452
HhaI	GCGC	2 cut(s)	298, 1339
Hin1I	GRCGYC	3 cut(s)	188, 996, 1029
Hin1II	CATG	6 cut(s)	146, 457, 473, 896, 1163, 1393
Hin6I	GCGC	2 cut(s)	296, 1337
HinP1I	GCGC	2 cut(s)	296, 1337
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	6 cut(s)	138, 497, 757, 762, 773, 826
HpaII	CCGG	2 cut(s)	247, 1026
HphI	GGTGA	6 cut(s)	296, 782, 862, 1180, 1189, 1310
Hpy166II	GTNNAC	7 cut(s)	27, 132, 337, 520, 565, 664, 1063
Hpy188III	TCNNGA	6 cut(s)	247, 470, 572, 665, 739, 1268
Hpy8I	GTNNAC	7 cut(s)	27, 132, 337, 520, 565, 664, 1063
Hpy99I	CGWCG	8 cut(s)	34, 190, 193, 998, 1001, 1034, 1287, 1446
HpyAV	CCTTC	4 cut(s)	662, 805, 847, 1295
HpyCH4III	ACNGT	3 cut(s)	290, 524, 1224
HpyCH4IV	ACGT	4 cut(s)	18, 188, 996, 1123
HpyCH4V	TGCA	4 cut(s)	587, 793, 956, 1085
HpyF10VI	GCNNNNNNNGC	8 cut(s)	171, 174, 177, 938, 1022, 1082, 1091, 1155
HpyF3I	CTNAG	9 cut(s)	147, 201, 357, 699, 899, 950, 1227, 1236, 1247
HpySE526I	ACGT	4 cut(s)	18, 188, 996, 1123
Hsp92I	GRCGYC	3 cut(s)	188, 996, 1029
Hsp92II	CATG	6 cut(s)	146, 457, 473, 896, 1163, 1393
HspAI	GCGC	2 cut(s)	296, 1337
Kpn2I	TCCGGA	1 cut(s)	246
KroI	GCCGGC	1 cut(s)	1025
KroNI	GCCGGC	1 cut(s)	1027
Kzo9I	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
LmnI	GCTCC	2 cut(s)	620, 1331
Lsp1109I	GCAGC	6 cut(s)	180, 183, 615, 1000, 1202, 1321
LweI	GCATC	3 cut(s)	596, 913, 1094
MaeI	CTAG	2 cut(s)	608, 978
MaeII	ACGT	4 cut(s)	18, 188, 996, 1123
MaeIII	GTNAC	4 cut(s)	12, 284, 344, 502
MalI	GATC	7 cut(s)	321, 544, 653, 887, 1205, 1266, 1546
MboI	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
MhlI	GDGCHC	5 cut(s)	202, 712, 736, 1010, 1059
MluCI	AATT	7 cut(s)	102, 111, 277, 869, 910, 1208, 1416
MlyI	GAGTC	2 cut(s)	147, 771
MmeI	TCCRAC	2 cut(s)	100, 1017
MroI	TCCGGA	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	1025
MseI	TTAA	6 cut(s)	105, 681, 725, 1182, 1379, 1529
MslI	CAYNNNNRTG	1 cut(s)	1388
MspA1I	CMGCKG	3 cut(s)	98, 174, 1235
MspI	CCGG	2 cut(s)	247, 1026
MspR9I	CCNGG	5 cut(s)	73, 540, 603, 767, 1308
MvaI	CCWGG	5 cut(s)	73, 540, 603, 767, 1308
MwoI	GCNNNNNNNGC	8 cut(s)	171, 174, 177, 938, 1022, 1082, 1091, 1155
NaeI	GCCGGC	1 cut(s)	1027
NcoI	CCATGG	1 cut(s)	1159
NdeII	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
NgoMIV	GCCGGC	1 cut(s)	1025
NlaIII	CATG	6 cut(s)	146, 457, 473, 896, 1163, 1393
NlaIV	GGNNCC	2 cut(s)	1057, 1327
NmuCI	GTSAC	3 cut(s)	12, 284, 502
NspV	TTCGAA	1 cut(s)	154
PaeR7I	CTCGAG	3 cut(s)	572, 1502, 1536
PagI	TCATGA	1 cut(s)	469
PasI	CCCWGGG	1 cut(s)	1307
PdiI	GCCGGC	1 cut(s)	1027
PfeI	GAWTC	4 cut(s)	497, 757, 773, 826
PfoI	TCCNGGA	2 cut(s)	71, 601
PkrI	GCNGC	9 cut(s)	167, 170, 173, 176, 179, 630, 1015, 1217, 1336
PleI	GAGTC	2 cut(s)	146, 770
PmaCI	CACGTG	1 cut(s)	1124
PmlI	CACGTG	1 cut(s)	1124
PpsI	GAGTC	2 cut(s)	146, 770
Ppu21I	YACGTR	1 cut(s)	1124
PshAI	GACNNNNGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	712
Psp6I	CCWGG	5 cut(s)	71, 538, 601, 765, 1306
PspCI	CACGTG	1 cut(s)	1124
PspFI	CCCAGC	1 cut(s)	1072
PspGI	CCWGG	5 cut(s)	71, 538, 601, 765, 1306
PspN4I	GGNNCC	2 cut(s)	1057, 1327
PspOMI	GGGCCC	1 cut(s)	1055
PspPI	GGNCC	4 cut(s)	436, 1055, 1056, 1304
PspXI	VCTCGAGB	2 cut(s)	1502, 1536
PstNI	CAGNNNCTG	1 cut(s)	829
PvuII	CAGCTG	2 cut(s)	98, 1235
RsaI	GTAC	4 cut(s)	26, 338, 566, 704
RsaNI	GTAC	4 cut(s)	25, 337, 565, 703
RseI	CAYNNNNRTG	1 cut(s)	1388
SacI	GAGCTC	1 cut(s)	712
SaqAI	TTAA	6 cut(s)	105, 681, 725, 1182, 1379, 1529
SatI	GCNGC	9 cut(s)	166, 169, 172, 175, 178, 629, 1014, 1216, 1335
Sau3AI	GATC	7 cut(s)	319, 542, 651, 885, 1203, 1264, 1544
Sau96I	GGNCC	4 cut(s)	436, 1055, 1056, 1304
SchI	GAGTC	2 cut(s)	147, 771
ScrFI	CCNGG	5 cut(s)	73, 540, 603, 767, 1308
SduI	GDGCHC	5 cut(s)	202, 712, 736, 1010, 1059
SfaNI	GCATC	3 cut(s)	596, 913, 1094
SfcI	CTRYAG	1 cut(s)	1220
Sfr274I	CTCGAG	3 cut(s)	572, 1502, 1536
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	436
SlaI	CTCGAG	3 cut(s)	572, 1502, 1536
SmiMI	CAYNNNNRTG	1 cut(s)	1388
SmlI	CTYRAG	5 cut(s)	572, 737, 927, 1502, 1536
SmoI	CTYRAG	5 cut(s)	572, 737, 927, 1502, 1536
Sse9I	AATT	7 cut(s)	102, 111, 277, 869, 910, 1208, 1416
SsiI	CCGC	4 cut(s)	166, 174, 177, 631
SspMI	CTAG	2 cut(s)	608, 978
SstI	GAGCTC	1 cut(s)	712
StyD4I	CCNGG	5 cut(s)	71, 538, 601, 765, 1306
StyI	CCWWGG	2 cut(s)	1159, 1321
TaaI	ACNGT	3 cut(s)	290, 524, 1224
TaiI	ACGT	4 cut(s)	21, 191, 999, 1126
TasI	AATT	7 cut(s)	102, 111, 277, 869, 910, 1208, 1416
TatI	WGTACW	2 cut(s)	336, 564
TauI	GCSGC	3 cut(s)	168, 177, 180
TfiI	GAWTC	4 cut(s)	497, 757, 773, 826
Tru1I	TTAA	6 cut(s)	105, 681, 725, 1182, 1379, 1529
Tru9I	TTAA	6 cut(s)	105, 681, 725, 1182, 1379, 1529
TscAI	CASTG	2 cut(s)	370, 1336
TseFI	GTSAC	3 cut(s)	12, 284, 502
TseI	GCWGC	6 cut(s)	168, 171, 628, 1013, 1215, 1334
Tsp45I	GTSAC	3 cut(s)	12, 284, 502
TspDTI	ATGAA	5 cut(s)	17, 458, 546, 1062, 1501
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	370, 1336
VpaK11BI	GGWCC	1 cut(s)	436
XapI	RAATTY	4 cut(s)	277, 869, 910, 1208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1157
XhoI	CTCGAG	3 cut(s)	572, 1502, 1536
XmiI	GTMKAC	1 cut(s)	1062
XspI	CTAG	2 cut(s)	608, 978
ZraI	GACGTC	2 cut(s)	189, 997

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.