RchiOBHm_Chr6g0301731

RNase H

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
62036873 .. 62039938
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27101

Sequence Viewer

Length: 1095 bp
ATGAACTGCTTGTCGCAGGTCTCATCCTACACGGCGGCGATTTTCCGAAAGACAGGTCGTTCATTCGGGACCGGTGATCTGTACGGACCCTGGAAGCGAAAATTGGACGTCTACGCTGGGGTGAGGCTAATCAGCTTTGAATCGGCGGTTTCCAGATTCCGGACTCAGCTCTACTCGTCTGAGAGCAAAGCGACGTCGTCTCGGCCGCGGAAGAAGAAGTCAGCACCCGAACGAGTTAGGGACCCGGAAAAGGACGCATTCTATGTAGTCCGCAAAGGAAATGTCGTCGGTGTCTATAAGAGCTTCGCTGATTGCCAAGCTGAGCAAGGCTCTTCGATATGTGATCCTCCTATTAGTGTGTACAAAGGGTACTCTATGCCTAAGAAGGATGAGCAATATCTTGCTTCCTGTGGACTTCAGAATGCGCTTTACACTATTTCAGCTGCAGATATGAAAGATGAGCTTTTTGGCAAGCTTGTGGACTGTCCTCTTGGAGATCCAGCATCTTCAAAAGGCGAAACGTCTGACAAGACTGCAGCCAAGAACAGATCCCACCAAGAGGCTGAATCAGAAAATGTGGAAGTAATTGGTTCAACTTCTGTATCAGATACTCCTTCCAGAAAGCAGGCCAAGAAAAAGGCTGAAGTTGAAGTTCCCCCTTCTGGCCGTGGCTGTACTCTTCAATTTGATGGTGCATCAAAAGGAAATCCTGGAGTAGCTGGTGCTGGAGCTGTACTGCAAGCAGATGATGGAACCTTGATCTGTAAACTACGTGAAGGTCTGGGTGTGGCAACCAGTAACGCTGCTGAGTACCGAGCTGTTATTTTAGGGTTAAAATATGCGCTTAAAAACGGTTTTTCCAGGATTTTTGTTCAAGGTGATTCCAAACTCGTCTGTATGCAGGTTCAGGGTTTATGGCAGGTGAAAAACCAGAACTTGTCTACTTTGCATGAAGAGGTGAAGAAACTGAAGGATGGATTTGTCTCCTTCAAGATCAGTCATGTTCTTAGGGAGCTAAATTCTGAGGCAGATGCTCAAGCAAACTTGGCAATCACTCTTGCCGATGGTCAAGTCCAGGAAGAGTCTGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

364

Amino Acids

39.38

Weight (kDa)

8.99

Isoelectric Point (pI)

31.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 227 - 322 3.4e-07 RNase H
RVT_3 PF13456 229 - 349 5.6e-26 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 910
AatII GACGTC 2 cut(s) 111, 197
Acc36I ACCTGC 3 cut(s) 7, 892, 910
AccI GTMKAC 2 cut(s) 111, 941
AccII CGCG 1 cut(s) 208
AccIII TCCGGA 1 cut(s) 159
AciI CCGC 5 cut(s) 35, 146, 206, 208, 271
AclWI GGATC 3 cut(s) 338, 491, 543
AcoI YGGCCR 2 cut(s) 203, 664
AcsI RAATTY 1 cut(s) 1018
AcuI CTGAAG 3 cut(s) 401, 663, 989
AcyI GRCGYC 2 cut(s) 108, 194
AfaI GTAC 6 cut(s) 83, 362, 371, 676, 735, 812
AfiI CCNNNNNNNGG 4 cut(s) 159, 250, 559, 662
AgeI ACCGGT 1 cut(s) 71
AgsI TTSAA 7 cut(s) 140, 510, 594, 650, 683, 875, 991
AjnI CCWGG 4 cut(s) 89, 709, 860, 1074
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
Alw26I GTCTC 3 cut(s) 25, 204, 988
AlwI GGATC 3 cut(s) 338, 491, 543
Aor13HI TCCGGA 1 cut(s) 159
AoxI GGCC 3 cut(s) 203, 627, 664
ApeKI GCWGC 3 cut(s) 443, 536, 803
ApoI RAATTY 1 cut(s) 1018
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 267, 299
AsiGI ACCGGT 1 cut(s) 71
AspLEI GCGC 2 cut(s) 427, 844
AspS9I GGNCC 3 cut(s) 69, 86, 241
AsuC2I CCSGG 1 cut(s) 245
AsuHPI GGTGA 5 cut(s) 86, 133, 890, 934, 970
AvaII GGWCC 3 cut(s) 69, 86, 241
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BbvI GCAGC 3 cut(s) 430, 548, 790
BccI CCATC 4 cut(s) 683, 743, 968, 1058
BceAI ACGGC 2 cut(s) 48, 651
BciT130I CCWGG 4 cut(s) 91, 711, 862, 1076
BcnI CCSGG 1 cut(s) 245
BcoDI GTCTC 3 cut(s) 25, 204, 988
BfmI CTRYAG 2 cut(s) 444, 534
BfuAI ACCTGC 3 cut(s) 7, 892, 910
BisI GCNGC 5 cut(s) 36, 206, 444, 537, 804
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 37, 207, 445, 538, 805
Bme1390I CCNGG 5 cut(s) 91, 245, 711, 862, 1076
Bme18I GGWCC 3 cut(s) 69, 86, 241
BmgT120I GGNCC 3 cut(s) 69, 86, 241
BmiI GGNNCC 5 cut(s) 70, 88, 242, 243, 754
BmrFI CCNGG 5 cut(s) 91, 245, 711, 862, 1076
BmsI GCATC 3 cut(s) 512, 704, 1021
BplI GAGNNNNNCTC 2 cut(s) 314, 346
BpmI CTGGAG 2 cut(s) 732, 747
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 1020
BpuMI CCSGG 1 cut(s) 245
BsaAI YACGTR 1 cut(s) 773
BsaHI GRCGYC 2 cut(s) 108, 194
BsaI GGTCTC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 89, 206, 667
BsaWI WCCGGW 2 cut(s) 71, 159
Bsc4I CCNNNNNNNGG 4 cut(s) 159, 250, 559, 662
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 795
BseAI TCCGGA 1 cut(s) 159
BseBI CCWGG 4 cut(s) 91, 711, 862, 1076
BseDI CCNNGG 3 cut(s) 89, 206, 667
BseGI GGATG 3 cut(s) 23, 394, 979
BseLI CCNNNNNNNGG 4 cut(s) 159, 250, 559, 662
BseMII CTCAG 5 cut(s) 171, 179, 312, 798, 1014
BseNI ACTGG 1 cut(s) 795
BseX3I CGGCCG 1 cut(s) 203
BseXI GCAGC 3 cut(s) 430, 548, 790
BseYI CCCAGC 1 cut(s) 116
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 206
BshFI GGCC 3 cut(s) 205, 629, 666
BshTI ACCGGT 1 cut(s) 71
BsiEI CGRYCG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 72, 160, 245
BslFI GGGAC 2 cut(s) 82, 254
BslI CCNNNNNNNGG 4 cut(s) 159, 250, 559, 662
BsmAI GTCTC 3 cut(s) 25, 204, 988
BsmBI CGTCTC 1 cut(s) 204
BsmFI GGGAC 2 cut(s) 82, 254
BsmI GAATGC 2 cut(s) 257, 427
BsnI GGCC 3 cut(s) 205, 629, 666
Bso31I GGTCTC 1 cut(s) 25
Bsp13I TCCGGA 1 cut(s) 159
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 6 cut(s) 76, 343, 496, 548, 759, 993
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 5 cut(s) 35, 146, 206, 208, 271
BspANI GGCC 3 cut(s) 205, 629, 666
BspCNI CTCAG 5 cut(s) 172, 178, 313, 799, 1015
BspEI TCCGGA 1 cut(s) 159
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 5 cut(s) 70, 88, 242, 243, 754
BspMAI CTGCAG 2 cut(s) 448, 538
BspMI ACCTGC 3 cut(s) 7, 892, 910
BspPI GGATC 3 cut(s) 338, 491, 543
BspQI GCTCTTC 1 cut(s) 337
BspTNI GGTCTC 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 360
BsrI ACTGG 1 cut(s) 795
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 89, 206, 667
BssMI GATC 6 cut(s) 76, 343, 496, 548, 759, 993
BssNI GRCGYC 2 cut(s) 108, 194
Bst2UI CCWGG 4 cut(s) 91, 711, 862, 1076
Bst4CI ACNGT 2 cut(s) 485, 854
Bst6I CTCTTC 4 cut(s) 337, 684, 948, 1074
BstACI GRCGYC 2 cut(s) 108, 194
BstAUI TGTACA 1 cut(s) 360
BstBAI YACGTR 1 cut(s) 773
BstC8I GCNNGC 3 cut(s) 473, 627, 741
BstDEI CTNAG 7 cut(s) 165, 180, 321, 381, 807, 1007, 1023
BstDSI CCRYGG 2 cut(s) 206, 667
BstF5I GGATG 3 cut(s) 23, 394, 979
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 2 cut(s) 427, 844
BstKTI GATC 6 cut(s) 79, 346, 499, 551, 762, 996
BstMAI GTCTC 3 cut(s) 25, 204, 988
BstMBI GATC 6 cut(s) 76, 343, 496, 548, 759, 993
BstMCI CGRYCG 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 1046
BstNI CCWGG 4 cut(s) 91, 711, 862, 1076
BstSCI CCNGG 5 cut(s) 89, 243, 709, 860, 1074
BstSFI CTRYAG 2 cut(s) 444, 534
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 430, 548, 790
BstX2I RGATCY 2 cut(s) 496, 548
BstYI RGATCY 2 cut(s) 496, 548
BstZI CGGCCG 1 cut(s) 203
BsuRI GGCC 3 cut(s) 205, 629, 666
BtgI CCRYGG 2 cut(s) 206, 667
BtsCI GGATG 3 cut(s) 23, 394, 979
BveI ACCTGC 3 cut(s) 7, 892, 910
Cac8I GCNNGC 3 cut(s) 473, 627, 741
CfoI GCGC 2 cut(s) 427, 844
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 3 cut(s) 69, 86, 241
Cfr42I CCGCGG 1 cut(s) 209
CseI GACGC 1 cut(s) 263
Csp6I GTAC 6 cut(s) 82, 361, 370, 675, 734, 811
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 2 cut(s) 950, 1001
CviQI GTAC 6 cut(s) 82, 361, 370, 675, 734, 811
DdeI CTNAG 7 cut(s) 165, 180, 321, 381, 807, 1007, 1023
DpnI GATC 6 cut(s) 78, 345, 498, 550, 761, 995
DpnII GATC 6 cut(s) 76, 343, 496, 548, 759, 993
EaeI YGGCCR 2 cut(s) 203, 664
EagI CGGCCG 1 cut(s) 203
Eam1104I CTCTTC 4 cut(s) 337, 684, 948, 1074
EarI CTCTTC 4 cut(s) 337, 684, 948, 1074
EclXI CGGCCG 1 cut(s) 203
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 3 cut(s) 69, 86, 241
Eco52I CGGCCG 1 cut(s) 203
Eco57I CTGAAG 3 cut(s) 401, 663, 989
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 4 cut(s) 89, 709, 860, 1074
Esp3I CGTCTC 1 cut(s) 204
FaeI CATG 2 cut(s) 953, 1004
FalI AAGNNNNNCTT 2 cut(s) 447, 479
FaqI GGGAC 2 cut(s) 82, 254
FatI CATG 2 cut(s) 949, 1000
FblI GTMKAC 2 cut(s) 111, 941
Fnu4HI GCNGC 5 cut(s) 36, 206, 444, 537, 804
FokI GGATG 3 cut(s) 10, 401, 986
Fsp4HI GCNGC 5 cut(s) 36, 206, 444, 537, 804
GlaI GCGC 2 cut(s) 426, 843
GluI GCNGC 5 cut(s) 36, 206, 444, 537, 804
GsaI CCCAGC 1 cut(s) 120
GsuI CTGGAG 2 cut(s) 732, 747
HaeIII GGCC 3 cut(s) 205, 629, 666
HapII CCGG 3 cut(s) 72, 160, 245
HgaI GACGC 1 cut(s) 263
HhaI GCGC 2 cut(s) 427, 844
Hin1I GRCGYC 2 cut(s) 108, 194
Hin1II CATG 2 cut(s) 953, 1004
Hin6I GCGC 2 cut(s) 425, 842
HinP1I GCGC 2 cut(s) 425, 842
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 6 cut(s) 140, 156, 163, 566, 881, 1082
HpaII CCGG 3 cut(s) 72, 160, 245
HphI GGTGA 5 cut(s) 86, 133, 890, 934, 970
Hpy166II GTNNAC 6 cut(s) 112, 361, 413, 481, 767, 942
Hpy188I TCNGA 7 cut(s) 47, 181, 420, 526, 571, 607, 1024
Hpy188III TCNNGA 5 cut(s) 67, 153, 160, 618, 991
Hpy8I GTNNAC 6 cut(s) 112, 361, 413, 481, 767, 942
Hpy99I CGWCG 3 cut(s) 196, 199, 290
HpyAV CCTTC 6 cut(s) 379, 624, 669, 770, 964, 997
HpyCH4III ACNGT 2 cut(s) 485, 854
HpyCH4IV ACGT 4 cut(s) 108, 194, 521, 772
HpyCH4V TGCA 6 cut(s) 446, 536, 695, 739, 901, 949
HpyF10VI GCNNNNNNNGC 1 cut(s) 1046
HpyF3I CTNAG 7 cut(s) 165, 180, 321, 381, 807, 1007, 1023
HpySE526I ACGT 4 cut(s) 108, 194, 521, 772
Hsp92I GRCGYC 2 cut(s) 108, 194
Hsp92II CATG 2 cut(s) 953, 1004
HspAI GCGC 2 cut(s) 425, 842
KflI GGGWCCC 1 cut(s) 241
Kpn2I TCCGGA 1 cut(s) 159
KspI CCGCGG 1 cut(s) 209
Kzo9I GATC 6 cut(s) 76, 343, 496, 548, 759, 993
LguI GCTCTTC 1 cut(s) 337
LmnI GCTCC 2 cut(s) 728, 1012
Lsp1109I GCAGC 3 cut(s) 430, 548, 790
LweI GCATC 3 cut(s) 512, 704, 1021
MaeII ACGT 4 cut(s) 108, 194, 521, 772
MaeIII GTNAC 1 cut(s) 797
MalI GATC 6 cut(s) 78, 345, 498, 550, 761, 995
MboI GATC 6 cut(s) 76, 343, 496, 548, 759, 993
MboII GAAGA 8 cut(s) 223, 226, 324, 498, 671, 965, 973, 1091
MflI RGATCY 2 cut(s) 496, 548
MluCI AATT 4 cut(s) 101, 585, 683, 1018
MlyI GAGTC 2 cut(s) 157, 1091
MnlI CCTC 6 cut(s) 117, 357, 498, 553, 949, 1018
MroI TCCGGA 1 cut(s) 159
MseI TTAA 2 cut(s) 833, 846
MspA1I CMGCKG 2 cut(s) 208, 443
MspI CCGG 3 cut(s) 72, 160, 245
MspR9I CCNGG 5 cut(s) 91, 245, 711, 862, 1076
Mva1269I GAATGC 2 cut(s) 257, 427
MvaI CCWGG 4 cut(s) 91, 711, 862, 1076
MvnI CGCG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 1046
NciI CCSGG 1 cut(s) 245
NdeII GATC 6 cut(s) 76, 343, 496, 548, 759, 993
NlaIII CATG 2 cut(s) 953, 1004
NlaIV GGNNCC 5 cut(s) 70, 88, 242, 243, 754
NmeAIII GCCGAG 1 cut(s) 181
PaqCI CACCTGC 1 cut(s) 910
PciSI GCTCTTC 1 cut(s) 337
PctI GAATGC 2 cut(s) 257, 427
PfeI GAWTC 4 cut(s) 140, 156, 566, 881
PflFI GACNNNGTC 1 cut(s) 196
PfoI TCCNGGA 3 cut(s) 709, 860, 1074
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 5 cut(s) 37, 207, 445, 538, 805
PleI GAGTC 2 cut(s) 157, 1090
PpsI GAGTC 2 cut(s) 157, 1090
Ppu21I YACGTR 1 cut(s) 773
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 4 cut(s) 89, 709, 860, 1074
PspFI CCCAGC 1 cut(s) 116
PspGI CCWGG 4 cut(s) 89, 709, 860, 1074
PspN4I GGNNCC 5 cut(s) 70, 88, 242, 243, 754
PspPI GGNCC 3 cut(s) 69, 86, 241
PspPPI RGGWCCY 1 cut(s) 241
PstI CTGCAG 2 cut(s) 448, 538
PsuI RGATCY 2 cut(s) 496, 548
PsyI GACNNNGTC 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 6 cut(s) 83, 362, 371, 676, 735, 812
RsaNI GTAC 6 cut(s) 82, 361, 370, 675, 734, 811
SacII CCGCGG 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 337
SaqAI TTAA 2 cut(s) 833, 846
SatI GCNGC 5 cut(s) 36, 206, 444, 537, 804
Sau3AI GATC 6 cut(s) 76, 343, 496, 548, 759, 993
Sau96I GGNCC 3 cut(s) 69, 86, 241
SchI GAGTC 2 cut(s) 157, 1091
ScrFI CCNGG 5 cut(s) 91, 245, 711, 862, 1076
SfaNI GCATC 3 cut(s) 512, 704, 1021
SfcI CTRYAG 2 cut(s) 444, 534
Sfr303I CCGCGG 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 209
SinI GGWCC 3 cut(s) 69, 86, 241
SmlI CTYRAG 1 cut(s) 1035
SmoI CTYRAG 1 cut(s) 1035
Sse9I AATT 4 cut(s) 101, 585, 683, 1018
SsiI CCGC 5 cut(s) 35, 146, 206, 208, 271
StyD4I CCNGG 5 cut(s) 89, 243, 709, 860, 1074
TaaI ACNGT 2 cut(s) 485, 854
TaiI ACGT 4 cut(s) 111, 197, 524, 775
TaqI TCGA 1 cut(s) 335
TasI AATT 4 cut(s) 101, 585, 683, 1018
TatI WGTACW 3 cut(s) 360, 674, 733
TauI GCSGC 2 cut(s) 38, 208
TfiI GAWTC 4 cut(s) 140, 156, 566, 881
Tru1I TTAA 2 cut(s) 833, 846
Tru9I TTAA 2 cut(s) 833, 846
TseI GCWGC 3 cut(s) 443, 536, 803
TspDTI ATGAA 4 cut(s) 17, 51, 467, 966
TspGWI ACGGA 1 cut(s) 99
Tth111I GACNNNGTC 1 cut(s) 196
VpaK11BI GGWCC 3 cut(s) 69, 86, 241
XapI RAATTY 1 cut(s) 1018
XcmI CCANNNNNNNNNTGG 1 cut(s) 1082
XmiI GTMKAC 2 cut(s) 111, 941
ZraI GACGTC 2 cut(s) 109, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.