pycom16g07500

RNase H

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
4887093 .. 4889941
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g07500.9

Sequence Viewer

Length: 1266 bp
ATGAAATGTCACGATCACATTATATTAGTGTTACCGAGGCGGCCCAGTCAAAAACCCATATCCTTCTCTATCTGCTCTGCCTCCGGCCCTGTGGCCTCTCTGTTTTCCGAAACTTTTACAATCCATCGTCCTCCGGTAACTGTGATGAACTGCTTGTCTCAAGTTTCGTCCTACACAACCGCCATTTTCAGAACCAAGTCCTGCTTCGTCGCGGCGGCGGGTTCTTCTCTGTGCGCACCTCTTCCCTGGAGAACAAAATTCAACCGTCCGATTGAGATTAAGTCTATCAACTTAGAATCAACGAAACTCCATGTCCAGCTCTACTCCTCTCGAAGCAAAAGCAGCAGCAGCAGGAAGACGACGTCGCTTCATTCGCGGAGAAATTCCGGACCCGAACCGGTTACTGAACCGGAAAAAGACGCCTTTTATGTAGTTCGCAAAGGGGATATCGTCGGTGTTTATAAGAGCTTCAGCGATTGCCAGGCCCAGCTTGGTTCTTCGATATTTGATCCTCCCGTTAGTGTGTACAAAGGGTACTCTTTGACTGAGGAAACTGAAGATTATCTCGTTTCGTTTGGACTTAAGAACGCAATTTACACCATCAGAGCTGAGGATATGAAGGGCGATCTTTTCGGCAAGCTTCTGCATTGCCCTTTTCAAGATCCAACATCTTCAAAAGATGAAACATCTGCGCTGGATGCATCCGAAAGGAGACCCCGTCAAGTGCCTGGGTCGGAAAATGTGGAAGTAATTGGTTCAACTTCCATATTAGAAGACCAATTCAGAAAGCATGTCGAAATAGAACATTCCACTGAATCGCCACCCCTGGACACTGAGTCCTGTATTCTTGAGTTTGATGGTGCGTCAAAAGGAAATCCTGGACTAGCAGGTGCTGGAGCTGTGCTGCGAGCTGATGATGGAAGTTTGATTTGTAAAATTCATGAAGGTCTCGGTGTTAGAACCAATAATGTTGCTGAGTACCGAGCTCTGATTCTAGGGCTAAAATATGCTCTTAAGAAAGGTTTTACTAAGATTCGTATCAAAGGTGACTCCAAACTCGTCTGTATGCAGGTTCAGGGGTTATGGAAGGTCCGAAACCAAAACATGTCTGATTTGTGTGAAGAGGTGAAGGAACTGAAGGATAAATTTATCTCATTCCAGATCAGTCATGTTCTCAGGGAACTAAACTCGGAGGCAGATGCTCAAGCAAACTTGGCAGTCCGTCTTAGCGACGGTCAAGTCCAAGAGGAGGAGTATGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

422

Amino Acids

46.54

Weight (kDa)

7.94

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 462
AarI CACCTGC 1 cut(s) 878
AasI GACNNNNNNGTC 1 cut(s) 1238
AatII GACGTC 1 cut(s) 365
Acc16I TGCGCA 1 cut(s) 235
Acc36I ACCTGC 2 cut(s) 878, 1060
AccII CGCG 2 cut(s) 212, 376
AccIII TCCGGA 1 cut(s) 386
AciI CCGC 6 cut(s) 40, 180, 212, 215, 218, 376
AclWI GGATC 2 cut(s) 503, 656
AcsI RAATTY 4 cut(s) 257, 382, 936, 1145
AcuI CTGAAG 3 cut(s) 454, 576, 1157
AcyI GRCGYC 2 cut(s) 362, 420
AfaI GTAC 3 cut(s) 527, 536, 980
AfiI CCNNNNNNNGG 1 cut(s) 1249
AflII CTTAAG 2 cut(s) 581, 1013
AflIII ACRYGT 1 cut(s) 1104
AgeI ACCGGT 1 cut(s) 397
AgsI TTSAA 4 cut(s) 262, 659, 675, 759
AhdI GACNNNNNGTC 1 cut(s) 835
AjnI CCWGG 5 cut(s) 245, 480, 727, 825, 877
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 8 cut(s) 319, 468, 490, 608, 640, 899, 911, 986
AluI AGCT 8 cut(s) 319, 468, 490, 608, 640, 899, 911, 986
Alw21I GWGCWC 1 cut(s) 988
Alw26I GTCTC 3 cut(s) 162, 706, 953
AlwI GGATC 2 cut(s) 503, 656
AlwNI CAGNNNCTG 1 cut(s) 893
Aor13HI TCCGGA 1 cut(s) 386
AoxI GGCC 4 cut(s) 41, 85, 93, 483
ApeKI GCWGC 4 cut(s) 342, 345, 348, 904
ApoI RAATTY 4 cut(s) 257, 382, 936, 1145
AsiGI ACCGGT 1 cut(s) 397
AspLEI GCGC 2 cut(s) 236, 694
AspS9I GGNCC 5 cut(s) 42, 86, 389, 484, 1090
AsuHPI GGTGA 2 cut(s) 1058, 1138
AvaII GGWCC 2 cut(s) 389, 1090
BanII GRGCYC 1 cut(s) 988
BbsI GAAGAC 2 cut(s) 362, 780
Bbv12I GWGCWC 1 cut(s) 988
BbvCI CCTCAGC 1 cut(s) 609
BbvI GCAGC 4 cut(s) 354, 357, 360, 891
BccI CCATC 4 cut(s) 132, 608, 851, 911
BciT130I CCWGG 5 cut(s) 247, 482, 729, 827, 879
BcoDI GTCTC 3 cut(s) 162, 706, 953
BfaI CTAG 2 cut(s) 884, 995
BfrI CTTAAG 2 cut(s) 581, 1013
BfuAI ACCTGC 2 cut(s) 878, 1060
BisI GCNGC 7 cut(s) 41, 213, 216, 343, 346, 349, 905
BlsI GCNGC 7 cut(s) 42, 214, 217, 344, 347, 350, 906
Bme1390I CCNGG 5 cut(s) 247, 482, 729, 827, 879
Bme18I GGWCC 2 cut(s) 389, 1090
BmeRI GACNNNNNGTC 1 cut(s) 835
BmgT120I GGNCC 5 cut(s) 42, 86, 389, 484, 1090
BmiI GGNNCC 1 cut(s) 391
BmrFI CCNGG 5 cut(s) 247, 482, 729, 827, 879
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 688, 710, 1189
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 362, 780
BpmI CTGGAG 2 cut(s) 268, 915
Bpu10I CCTNAGC 1 cut(s) 609
BpuEI CTTGAG 3 cut(s) 144, 869, 1188
BsaBI GATNNNNATC 1 cut(s) 1037
BsaHI GRCGYC 2 cut(s) 362, 420
BsaI GGTCTC 2 cut(s) 706, 953
BsaJI CCNNGG 4 cut(s) 35, 245, 728, 825
BsaWI WCCGGW 4 cut(s) 133, 386, 397, 409
BsaXI ACNNNNNCTCC 2 cut(s) 703, 733
Bsc4I CCNNNNNNNGG 1 cut(s) 1249
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 646
Bse8I GATNNNNATC 1 cut(s) 1037
BseAI TCCGGA 1 cut(s) 386
BseBI CCWGG 5 cut(s) 247, 482, 729, 827, 879
BseDI CCNNGG 4 cut(s) 35, 245, 728, 825
BseGI GGATG 2 cut(s) 701, 703
BseJI GATNNNNATC 1 cut(s) 1037
BseLI CCNNNNNNNGG 1 cut(s) 1249
BseMI GCAATG 1 cut(s) 646
BseMII CTCAG 5 cut(s) 537, 600, 825, 966, 1189
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 3 cut(s) 316, 1262, 1265
BseXI GCAGC 4 cut(s) 354, 357, 360, 891
BseYI CCCAGC 1 cut(s) 486
Bsh1236I CGCG 2 cut(s) 212, 376
BshFI GGCC 4 cut(s) 43, 87, 95, 485
BshTI ACCGGT 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 988
BsiSI CCGG 5 cut(s) 84, 134, 387, 398, 410
BslI CCNNNNNNNGG 1 cut(s) 1249
BsmAI GTCTC 3 cut(s) 162, 706, 953
BsnI GGCC 4 cut(s) 43, 87, 95, 485
Bso31I GGTCTC 2 cut(s) 706, 953
Bsp1286I GDGCHC 1 cut(s) 988
Bsp13I TCCGGA 1 cut(s) 386
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 5 cut(s) 13, 508, 625, 661, 1161
BspACI CCGC 6 cut(s) 40, 180, 212, 215, 218, 376
BspANI GGCC 4 cut(s) 43, 87, 95, 485
BspCNI CTCAG 5 cut(s) 538, 601, 826, 967, 1188
BspEI TCCGGA 1 cut(s) 386
BspFNI CGCG 2 cut(s) 212, 376
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 1 cut(s) 391
BspMI ACCTGC 2 cut(s) 878, 1060
BspPI GGATC 2 cut(s) 503, 656
BspTI CTTAAG 2 cut(s) 581, 1013
BspTNI GGTCTC 2 cut(s) 706, 953
BsrDI GCAATG 1 cut(s) 646
BsrFI RCCGGY 1 cut(s) 397
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 4 cut(s) 35, 245, 728, 825
BssMI GATC 5 cut(s) 13, 508, 625, 661, 1161
BssNI GRCGYC 2 cut(s) 362, 420
Bst2UI CCWGG 5 cut(s) 247, 482, 729, 827, 879
Bst4CI ACNGT 3 cut(s) 142, 266, 1235
Bst6I CTCTTC 2 cut(s) 246, 1116
BstACI GRCGYC 2 cut(s) 362, 420
BstAFI CTTAAG 2 cut(s) 581, 1013
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 2 cut(s) 638, 909
BstDEI CTNAG 8 cut(s) 292, 546, 609, 834, 975, 1029, 1175, 1226
BstF5I GGATG 2 cut(s) 701, 703
BstFNI CGCG 2 cut(s) 212, 376
BstHHI GCGC 2 cut(s) 236, 694
BstKTI GATC 5 cut(s) 16, 511, 628, 664, 1164
BstMAI GTCTC 3 cut(s) 162, 706, 953
BstMBI GATC 5 cut(s) 13, 508, 625, 661, 1161
BstMWI GCNNNNNNNGC 5 cut(s) 342, 348, 373, 698, 1214
BstNI CCWGG 5 cut(s) 247, 482, 729, 827, 879
BstNSI RCATGY 2 cut(s) 794, 1108
BstSCI CCNGG 5 cut(s) 245, 480, 727, 825, 877
BstUI CGCG 2 cut(s) 212, 376
BstV1I GCAGC 4 cut(s) 354, 357, 360, 891
BstV2I GAAGAC 2 cut(s) 362, 780
BstX2I RGATCY 1 cut(s) 661
BstYI RGATCY 1 cut(s) 661
BsuRI GGCC 4 cut(s) 43, 87, 95, 485
BtsCI GGATG 2 cut(s) 701, 703
BtsIMutI CAGTG 2 cut(s) 810, 831
BveI ACCTGC 2 cut(s) 878, 1060
Cac8I GCNNGC 2 cut(s) 638, 909
CaiI CAGNNNCTG 1 cut(s) 893
CciI TCATGA 1 cut(s) 940
CfoI GCGC 2 cut(s) 236, 694
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 5 cut(s) 42, 86, 389, 484, 1090
CseI GACGC 2 cut(s) 428, 852
Csp6I GTAC 3 cut(s) 526, 535, 979
CspAI ACCGGT 1 cut(s) 397
CviAII CATG 5 cut(s) 311, 791, 941, 1105, 1169
CviQI GTAC 3 cut(s) 526, 535, 979
DdeI CTNAG 8 cut(s) 292, 546, 609, 834, 975, 1029, 1175, 1226
DpnI GATC 5 cut(s) 15, 510, 627, 663, 1163
DpnII GATC 5 cut(s) 13, 508, 625, 661, 1161
DrdI GACNNNNNNGTC 1 cut(s) 1238
DriI GACNNNNNGTC 1 cut(s) 835
DseDI GACNNNNNNGTC 1 cut(s) 1238
Eam1104I CTCTTC 2 cut(s) 246, 1116
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 2 cut(s) 246, 1116
Ecl136II GAGCTC 1 cut(s) 986
Eco24I GRGCYC 1 cut(s) 988
Eco31I GGTCTC 2 cut(s) 706, 953
Eco32I GATATC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 389, 1090
Eco53kI GAGCTC 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 454, 576, 1157
EcoICRI GAGCTC 1 cut(s) 986
EcoRII CCWGG 5 cut(s) 245, 480, 727, 825, 877
EcoRV GATATC 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 703
EcoT38I GRGCYC 1 cut(s) 988
FaeI CATG 5 cut(s) 314, 794, 944, 1108, 1172
FalI AAGNNNNNCTT 2 cut(s) 188, 220
FatI CATG 5 cut(s) 310, 790, 940, 1104, 1168
FauI CCCGC 1 cut(s) 211
Fnu4HI GCNGC 7 cut(s) 41, 213, 216, 343, 346, 349, 905
FokI GGATG 2 cut(s) 688, 710
FriOI GRGCYC 1 cut(s) 988
Fsp4HI GCNGC 7 cut(s) 41, 213, 216, 343, 346, 349, 905
FspAI RTGCGCAY 1 cut(s) 235
FspBI CTAG 2 cut(s) 884, 995
FspI TGCGCA 1 cut(s) 235
GlaI GCGC 2 cut(s) 235, 693
GluI GCNGC 7 cut(s) 41, 213, 216, 343, 346, 349, 905
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 2 cut(s) 268, 915
HaeIII GGCC 4 cut(s) 43, 87, 95, 485
HapII CCGG 5 cut(s) 84, 134, 387, 398, 410
HgaI GACGC 2 cut(s) 428, 852
HhaI GCGC 2 cut(s) 236, 694
Hin1I GRCGYC 2 cut(s) 362, 420
Hin1II CATG 5 cut(s) 314, 794, 944, 1108, 1172
Hin6I GCGC 2 cut(s) 234, 692
HinP1I GCGC 2 cut(s) 234, 692
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 6 cut(s) 296, 815, 836, 991, 1033, 1049
HpaII CCGG 5 cut(s) 84, 134, 387, 398, 410
HphI GGTGA 2 cut(s) 1058, 1138
Hpy166II GTNNAC 1 cut(s) 526
Hpy188III TCNNGA 7 cut(s) 11, 330, 387, 659, 848, 941, 1159
Hpy8I GTNNAC 1 cut(s) 526
Hpy99I CGWCG 5 cut(s) 212, 364, 367, 455, 1235
HpyAV CCTTC 6 cut(s) 73, 613, 938, 1081, 1123, 1132
HpyCH4III ACNGT 3 cut(s) 142, 266, 1235
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 3 cut(s) 646, 701, 1069
HpyF10VI GCNNNNNNNGC 5 cut(s) 342, 348, 373, 698, 1214
HpyF3I CTNAG 8 cut(s) 292, 546, 609, 834, 975, 1029, 1175, 1226
HpySE526I ACGT 1 cut(s) 362
Hsp92I GRCGYC 2 cut(s) 362, 420
Hsp92II CATG 5 cut(s) 314, 794, 944, 1108, 1172
HspAI GCGC 2 cut(s) 234, 692
Kpn2I TCCGGA 1 cut(s) 386
Kzo9I GATC 5 cut(s) 13, 508, 625, 661, 1161
LmnI GCTCC 1 cut(s) 896
Lsp1109I GCAGC 4 cut(s) 354, 357, 360, 891
LweI GCATC 3 cut(s) 688, 710, 1189
MaeI CTAG 2 cut(s) 884, 995
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 5 cut(s) 8, 30, 136, 400, 1046
MalI GATC 5 cut(s) 15, 510, 627, 663, 1163
MboI GATC 5 cut(s) 13, 508, 625, 661, 1161
MboII GAAGA 8 cut(s) 216, 233, 367, 489, 569, 663, 785, 1133
MflI RGATCY 1 cut(s) 661
MhlI GDGCHC 1 cut(s) 988
MluCI AATT 7 cut(s) 257, 382, 591, 750, 779, 936, 1145
MlyI GAGTC 2 cut(s) 845, 1043
MmeI TCCRAC 2 cut(s) 689, 714
Mph1103I ATGCAT 1 cut(s) 703
MroI TCCGGA 1 cut(s) 386
MseI TTAA 3 cut(s) 279, 582, 1014
MspCI CTTAAG 2 cut(s) 581, 1013
MspI CCGG 5 cut(s) 84, 134, 387, 398, 410
MspR9I CCNGG 5 cut(s) 247, 482, 729, 827, 879
MvaI CCWGG 5 cut(s) 247, 482, 729, 827, 879
MvnI CGCG 2 cut(s) 212, 376
MwoI GCNNNNNNNGC 5 cut(s) 342, 348, 373, 698, 1214
NdeII GATC 5 cut(s) 13, 508, 625, 661, 1161
NlaIII CATG 5 cut(s) 314, 794, 944, 1108, 1172
NlaIV GGNNCC 1 cut(s) 391
NmuCI GTSAC 2 cut(s) 8, 1046
NsbI TGCGCA 1 cut(s) 235
NsiI ATGCAT 1 cut(s) 703
NspI RCATGY 2 cut(s) 794, 1108
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 878
PciI ACATGT 1 cut(s) 1104
PfeI GAWTC 4 cut(s) 296, 815, 991, 1033
PflFI GACNNNGTC 2 cut(s) 361, 717
PfoI TCCNGGA 1 cut(s) 877
PinAI ACCGGT 1 cut(s) 397
PkrI GCNGC 7 cut(s) 42, 214, 217, 344, 347, 350, 906
PleI GAGTC 2 cut(s) 844, 1043
PpsI GAGTC 2 cut(s) 844, 1043
PscI ACATGT 1 cut(s) 1104
PsiI TTATAA 1 cut(s) 462
Psp124BI GAGCTC 1 cut(s) 988
Psp6I CCWGG 5 cut(s) 245, 480, 727, 825, 877
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 5 cut(s) 245, 480, 727, 825, 877
PspN4I GGNNCC 1 cut(s) 391
PspPI GGNCC 5 cut(s) 42, 86, 389, 484, 1090
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PstNI CAGNNNCTG 1 cut(s) 893
PsuI RGATCY 1 cut(s) 661
PsyI GACNNNGTC 2 cut(s) 361, 717
RsaI GTAC 3 cut(s) 527, 536, 980
RsaNI GTAC 3 cut(s) 526, 535, 979
SacI GAGCTC 1 cut(s) 988
SaqAI TTAA 3 cut(s) 279, 582, 1014
SatI GCNGC 7 cut(s) 41, 213, 216, 343, 346, 349, 905
Sau3AI GATC 5 cut(s) 13, 508, 625, 661, 1161
Sau96I GGNCC 5 cut(s) 42, 86, 389, 484, 1090
SchI GAGTC 2 cut(s) 845, 1043
ScrFI CCNGG 5 cut(s) 247, 482, 729, 827, 879
SduI GDGCHC 1 cut(s) 988
SfaNI GCATC 3 cut(s) 688, 710, 1189
SinI GGWCC 2 cut(s) 389, 1090
SmlI CTYRAG 5 cut(s) 159, 581, 848, 1013, 1203
SmoI CTYRAG 5 cut(s) 159, 581, 848, 1013, 1203
Sse9I AATT 7 cut(s) 257, 382, 591, 750, 779, 936, 1145
SsiI CCGC 6 cut(s) 40, 180, 212, 215, 218, 376
SspMI CTAG 2 cut(s) 884, 995
SstI GAGCTC 1 cut(s) 988
StyD4I CCNGG 5 cut(s) 245, 480, 727, 825, 877
TaaI ACNGT 3 cut(s) 142, 266, 1235
TaiI ACGT 1 cut(s) 365
TaqI TCGA 3 cut(s) 331, 500, 795
TasI AATT 7 cut(s) 257, 382, 591, 750, 779, 936, 1145
TatI WGTACW 1 cut(s) 525
TauI GCSGC 3 cut(s) 43, 215, 218
TfiI GAWTC 4 cut(s) 296, 815, 991, 1033
Tru1I TTAA 3 cut(s) 279, 582, 1014
Tru9I TTAA 3 cut(s) 279, 582, 1014
TscAI CASTG 2 cut(s) 817, 838
TseFI GTSAC 2 cut(s) 8, 1046
TseI GCWGC 4 cut(s) 342, 345, 348, 904
Tsp45I GTSAC 2 cut(s) 8, 1046
TspDTI ATGAA 7 cut(s) 17, 161, 359, 632, 696, 929, 957
TspGWI ACGGA 1 cut(s) 1211
TspRI CASTG 2 cut(s) 817, 838
Tth111I GACNNNGTC 2 cut(s) 361, 717
Vha464I CTTAAG 2 cut(s) 581, 1013
VpaK11BI GGWCC 2 cut(s) 389, 1090
XapI RAATTY 4 cut(s) 257, 382, 936, 1145
XceI RCATGY 2 cut(s) 794, 1108
XcmI CCANNNNNNNNNTGG 1 cut(s) 488
XspI CTAG 2 cut(s) 884, 995
ZraI GACGTC 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.