Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Forward (+)

9942014 .. 9942526

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11760.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGCAGGGTTCCTGTATTCTTCATTTTGATGGTACATTAAACGGAAACCCTGGAATAGCTGGTGCTGGAGCTGTGTTGCAAGCAGACGATGGAACGCTTGGTCTGGGTGTTGTAACCAACAATGTTGCTGAGTACCGAGTTGTTATTTTAGGGTTAAATTGTGCTCATAAAACAGGTTTTACAAGGATTTCTGTCCAAGGCGACTCCAAACTCGTGTGTATGCAGGCTGAGAAAGATAACTGGACAGGTTCAGGGTTTATGGAAGGTGAAAAACCAGAACATGTCGGATTTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

99

Amino Acids

10.22

Weight (kDa)

5.1

Isoelectric Point (pI)

7.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	2 cut(s)	34, 134
AflIII	ACRYGT	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	49
AluBI	AGCT	2 cut(s)	59, 71
AluI	AGCT	2 cut(s)	59, 71
Alw21I	GWGCWC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	278
BauI	CACGAG	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	166
BccI	CCATC	2 cut(s)	23, 83
BciT130I	CCWGG	1 cut(s)	51
Bme1390I	CCNGG	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	49, 196
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	2 cut(s)	49, 196
BseMII	CTCAG	2 cut(s)	120, 219
BseNI	ACTGG	1 cut(s)	245
BsiHKAI	GWGCWC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	166
BspCNI	CTCAG	2 cut(s)	121, 220
BspLI	GGNNCC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	49, 196
BssSI	CACGAG	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	196
Bst2BI	CACGAG	1 cut(s)	212
Bst2UI	CCWGG	1 cut(s)	51
BstC8I	GCNNGC	2 cut(s)	81, 225
BstDEI	CTNAG	2 cut(s)	129, 228
BstNI	CCWGG	1 cut(s)	51
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	81, 225
Csp6I	GTAC	2 cut(s)	33, 133
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	3 cut(s)	59, 71, 227
CviKI_1	RGCY	3 cut(s)	59, 71, 227
CviQI	GTAC	2 cut(s)	33, 133
DdeI	CTNAG	2 cut(s)	129, 228
Eco130I	CCWWGG	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
FaeI	CATG	1 cut(s)	284
FaiI	YATR	5 cut(s)	168, 221, 260, 282, 295
FatI	CATG	1 cut(s)	280
GsuI	CTGGAG	1 cut(s)	87
Hin1II	CATG	1 cut(s)	284
HinfI	GANTC	1 cut(s)	203
HphI	GGTGA	1 cut(s)	278
Hpy188I	TCNGA	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	257
HpyCH4V	TGCA	3 cut(s)	4, 79, 223
HpyF3I	CTNAG	2 cut(s)	129, 228
Hsp92II	CATG	1 cut(s)	284
LmnI	GCTCC	1 cut(s)	68
MaeIII	GTNAC	1 cut(s)	112
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	157
MlyI	GAGTC	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	265
MseI	TTAA	2 cut(s)	38, 155
MslI	CAYNNNNRTG	1 cut(s)	27
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	10
NspI	RCATGY	1 cut(s)	284
PciI	ACATGT	1 cut(s)	280
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PscI	ACATGT	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	10
RsaI	GTAC	2 cut(s)	34, 134
RsaNI	GTAC	2 cut(s)	33, 133
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	38, 155
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	5 cut(s)	61, 73, 178, 250, 268
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	1 cut(s)	157
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	196
TasI	AATT	1 cut(s)	157
Tru1I	TTAA	2 cut(s)	38, 155
Tru9I	TTAA	2 cut(s)	38, 155
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	57
XceI	RCATGY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.