Rroxscaffold_3G00242180

RNase H

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001415
Physical Location & Seq
Reverse (-)
34557820 .. 34560780
2961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00242180.1

Sequence Viewer

Length: 414 bp
ATGTATGTAGTCCGCAAAGGAAACGTCGTCGGTGTCTATAAGAGCTTCGCTGATTGCCAAGCTCAGCAAGCTTCTTCAATATGTGATCGTCCAATTAGTGTGTACAAAGGGTACTCTATGCCTAAGAAGGATGAGCAATATCTTGCTTCCTGTGGACTTCAGAATGCGCTTTACACTATTTCAGCTGCAGATATGAAGGATGAGCTTTTTGGCAAGCTTGTGGACTGTCCTCTTGGAGATCCAGCATCTTCAAAAGGCGAAACGTCTGAGAAGACTGCAGCCAAGAAGAGATCCCGCCAAGAGGCTGAAACAGAAAATGTGGAAGTAATTGTTTCAACTTCTGTATCAGATACTCCTTCCAGAAAGCAGGCCAAGAAAAAGGCTGAAGTTGAAGTCCCCCTTCTGGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cauli_VI DUF393 RVT_3

Protein Analysis

137

Amino Acids

14.89

Weight (kDa)

8.29

Isoelectric Point (pI)

36.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 13, 295
AclWI GGATC 2 cut(s) 233, 285
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 2 cut(s) 143, 405
AfaI GTAC 2 cut(s) 104, 113
AfiI CCNNNNNNNGG 2 cut(s) 301, 403
AgsI TTSAA 4 cut(s) 78, 252, 336, 392
AluBI AGCT 6 cut(s) 45, 62, 71, 185, 205, 217
AluI AGCT 6 cut(s) 45, 62, 71, 185, 205, 217
AlwI GGATC 2 cut(s) 233, 285
AoxI GGCC 2 cut(s) 369, 405
ApeKI GCWGC 2 cut(s) 185, 278
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
AspLEI GCGC 1 cut(s) 169
BaeI ACNNNNGTAYC 2 cut(s) 327, 360
BbsI GAAGAC 1 cut(s) 278
BbvI GCAGC 2 cut(s) 172, 290
BceAI ACGGC 1 cut(s) 392
BfmI CTRYAG 2 cut(s) 186, 276
BisI GCNGC 2 cut(s) 186, 279
BlpI GCTNAGC 1 cut(s) 63
BlsI GCNGC 2 cut(s) 187, 280
BmsI GCATC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 278
Bpu1102I GCTNAGC 1 cut(s) 63
Bsc4I CCNNNNNNNGG 2 cut(s) 301, 403
BseGI GGATG 2 cut(s) 136, 205
BseLI CCNNNNNNNGG 2 cut(s) 301, 403
BseMII CTCAG 2 cut(s) 77, 258
BseXI GCAGC 2 cut(s) 172, 290
BshFI GGCC 2 cut(s) 371, 407
BslFI GGGAC 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 301, 403
BsmFI GGGAC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 2 cut(s) 371, 407
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 3 cut(s) 85, 238, 290
Bsp1720I GCTNAGC 1 cut(s) 63
BspACI CCGC 2 cut(s) 13, 295
BspANI GGCC 2 cut(s) 371, 407
BspCNI CTCAG 2 cut(s) 76, 259
BspMAI CTGCAG 2 cut(s) 190, 280
BspPI GGATC 2 cut(s) 233, 285
BsrGI TGTACA 1 cut(s) 102
BssMI GATC 3 cut(s) 85, 238, 290
Bst4CI ACNGT 1 cut(s) 227
Bst6I CTCTTC 1 cut(s) 281
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 3 cut(s) 69, 215, 369
BstDEI CTNAG 3 cut(s) 63, 123, 267
BstF5I GGATG 2 cut(s) 136, 205
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 3 cut(s) 88, 241, 293
BstMBI GATC 3 cut(s) 85, 238, 290
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstSFI CTRYAG 2 cut(s) 186, 276
BstV1I GCAGC 2 cut(s) 172, 290
BstV2I GAAGAC 1 cut(s) 278
BstX2I RGATCY 2 cut(s) 238, 290
BstYI RGATCY 2 cut(s) 238, 290
BsuRI GGCC 2 cut(s) 371, 407
BtsCI GGATG 2 cut(s) 136, 205
Cac8I GCNNGC 3 cut(s) 69, 215, 369
CfoI GCGC 1 cut(s) 169
Csp6I GTAC 2 cut(s) 103, 112
CviQI GTAC 2 cut(s) 103, 112
DdeI CTNAG 3 cut(s) 63, 123, 267
DpnI GATC 3 cut(s) 87, 240, 292
DpnII GATC 3 cut(s) 85, 238, 290
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 143, 405
FaiI YATR 5 cut(s) 6, 39, 82, 119, 194
FalI AAGNNNNNCTT 1 cut(s) 384
FaqI GGGAC 1 cut(s) 380
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 2 cut(s) 186, 279
FokI GGATG 2 cut(s) 143, 212
Fsp4HI GCNGC 2 cut(s) 186, 279
GlaI GCGC 1 cut(s) 168
GluI GCNGC 2 cut(s) 186, 279
HaeIII GGCC 2 cut(s) 371, 407
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HindIII AAGCTT 2 cut(s) 69, 215
Hpy166II GTNNAC 3 cut(s) 103, 155, 223
Hpy188I TCNGA 3 cut(s) 162, 268, 349
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 3 cut(s) 103, 155, 223
Hpy99I CGWCG 2 cut(s) 29, 32
HpyAV CCTTC 4 cut(s) 121, 190, 366, 410
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 2 cut(s) 24, 263
HpyCH4V TGCA 2 cut(s) 188, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 3 cut(s) 63, 123, 267
HpySE526I ACGT 2 cut(s) 24, 263
HspAI GCGC 1 cut(s) 167
Kzo9I GATC 3 cut(s) 85, 238, 290
LpnPI CCDG 5 cut(s) 163, 255, 353, 373, 389
Lsp1109I GCAGC 2 cut(s) 172, 290
LweI GCATC 1 cut(s) 254
MaeII ACGT 2 cut(s) 24, 263
MalI GATC 3 cut(s) 87, 240, 292
MboI GATC 3 cut(s) 85, 238, 290
MboII GAAGA 4 cut(s) 66, 240, 283, 298
MflI RGATCY 2 cut(s) 238, 290
MluCI AATT 2 cut(s) 93, 327
MnlI CCTC 2 cut(s) 240, 295
MspA1I CMGCKG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 3 cut(s) 85, 238, 290
PctI GAATGC 1 cut(s) 169
PkrI GCNGC 2 cut(s) 187, 280
PstI CTGCAG 2 cut(s) 190, 280
PsuI RGATCY 2 cut(s) 238, 290
PvuII CAGCTG 1 cut(s) 185
RsaI GTAC 2 cut(s) 104, 113
RsaNI GTAC 2 cut(s) 103, 112
SatI GCNGC 2 cut(s) 186, 279
Sau3AI GATC 3 cut(s) 85, 238, 290
SetI ASST 8 cut(s) 27, 47, 64, 73, 187, 207, 219, 266
SfaNI GCATC 1 cut(s) 254
SfcI CTRYAG 2 cut(s) 186, 276
Sse9I AATT 2 cut(s) 93, 327
SsiI CCGC 2 cut(s) 13, 295
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 2 cut(s) 27, 266
TasI AATT 2 cut(s) 93, 327
TatI WGTACW 1 cut(s) 102
TseI GCWGC 2 cut(s) 185, 278
TspDTI ATGAA 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.