Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Forward (+)

60907777 .. 60910410

Gene Structure 2634 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G036440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

ATGAACTGCTTGTTGCTGGTCTCATCCTACACGGTGGCGATTTTCCGAACGACAGGTCGTTCATTCGGGACGGGTGCTCTGTACGGACCCTGGAAGCGAAAATTGGAGGTCTACGCTGGGGTGAAGCTAATCAGGTTTGAATGGGCGGTTTCCAGATTCCGGACTCAGCTCTACTCGTCTGAGAGCAAAGCGACGTCGTCTCGGCCGCGGAAGAAGAAGTCAGCACCCGAACGAGTTATGGACCCGGAAAAGGACGCATTCTATGTAGTCCGCAAAGGAAATGTCGTCGGTGTGTATAAGAGCTTCGCTGATTGCCAAGCTGAGCAAGGCTCTTCGGATGAGCAATATCTTGCTTCCTGTGGACTTCAGAATGCGCTTTACACTATTTCAGCTGCAGATATGAAAGATGAGCTTTTTGGCAAGCTTCTGGACTGTCCTCTTGGAGATCCAGCATCTTCAAAAGGCGAAACGTCTGACAAGACTGCAGCCAAGAAGAGATCCCACCAAGAGGCTGAATCAGAAAATGTGGAAGTAATTGGTTCAACTTCTGTATCAGATACTCCTTCCAGAAAGCAGGCCAAGAAAAAGGCTGAAGTTGAAGTTCCCCCTTCTGGCCGTGGCTGTACTCTTCAATTTGATGGTGCATCAAAAGGAAATCCTGGAGTAGCTGGTGCTGGAGCTGTACTGCAAGCAGATGATGGAACCTTGATCTGTAAACTACGTGAAGGTCTGGGTGTTGCAACCAGTAACGCTGCTGAGTACCAAGCTGTTATTTTAGGGTTAAAATATGCGCTTAAAAAAGGTTTTTCCAGGATTTTTGTTCAAGGTGACTCCAAACTCGTCTGTATGCAGGTTCAGGGTTTATGGCAGGTGAAAAACCAGAACTTGTCTACTTTGCATGAAGAGGTGAAGAAACTGAAGGATGGATTTGTCTCCTTCAAGATCAGTCATGTTCTTAGGGAGCTAAATTCTGAGGCAGATGCTCAAGCAAACTTGGCAATCACTCTTGCCGAATGTGGCTTGGTACTTGCTACAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

346

Amino Acids

37.45

Weight (kDa)

9.02

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_H	PF00075	210 - 305	1.2e-07	RNase H
RVT_3	PF13456	212 - 332	4.7e-26	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	859
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	2 cut(s)	841, 859
AccI	GTMKAC	2 cut(s)	111, 890
AccII	CGCG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	4 cut(s)	146, 206, 208, 271
AclWI	GGATC	2 cut(s)	440, 492
AcoI	YGGCCR	2 cut(s)	203, 613
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	3 cut(s)	350, 612, 938
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	5 cut(s)	83, 625, 684, 761, 1026
AfiI	CCNNNNNNNGG	4 cut(s)	159, 250, 508, 611
AgsI	TTSAA	7 cut(s)	140, 459, 543, 599, 632, 824, 940
AjnI	CCWGG	3 cut(s)	89, 658, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	86, 118
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	25, 204, 937
AlwI	GGATC	2 cut(s)	440, 492
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	3 cut(s)	203, 576, 613
ApeKI	GCWGC	3 cut(s)	392, 485, 752
ApoI	RAATTY	1 cut(s)	967
ArsI	GACNNNNNNTTYG	4 cut(s)	40, 72, 267, 299
AspLEI	GCGC	2 cut(s)	376, 793
AspS9I	GGNCC	2 cut(s)	86, 241
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	133, 839, 883, 919
AvaII	GGWCC	2 cut(s)	86, 241
BaeI	ACNNNNGTAYC	2 cut(s)	534, 567
BarI	GAAGNNNNNNTAC	2 cut(s)	287, 319
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	379, 497, 739
BccI	CCATC	3 cut(s)	632, 692, 917
BceAI	ACGGC	1 cut(s)	600
BciT130I	CCWGG	3 cut(s)	91, 660, 811
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	25, 204, 937
BfmI	CTRYAG	2 cut(s)	393, 483
BfuAI	ACCTGC	2 cut(s)	841, 859
BisI	GCNGC	4 cut(s)	206, 393, 486, 753
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	4 cut(s)	207, 394, 487, 754
Bme1390I	CCNGG	4 cut(s)	91, 245, 660, 811
Bme18I	GGWCC	2 cut(s)	86, 241
BmgT120I	GGNCC	2 cut(s)	86, 241
BmiI	GGNNCC	3 cut(s)	88, 243, 703
BmrFI	CCNGG	4 cut(s)	91, 245, 660, 811
BmsI	GCATC	3 cut(s)	461, 653, 970
BplI	GAGNNNNNCTC	2 cut(s)	314, 346
BpmI	CTGGAG	2 cut(s)	681, 696
Bpu1102I	GCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	722
BsaHI	GRCGYC	1 cut(s)	194
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	89, 206, 616
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 250, 508, 611
Bse1I	ACTGG	1 cut(s)	744
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	3 cut(s)	91, 660, 811
BseDI	CCNNGG	3 cut(s)	89, 206, 616
BseGI	GGATG	3 cut(s)	23, 343, 928
BseLI	CCNNNNNNNGG	4 cut(s)	159, 250, 508, 611
BseMII	CTCAG	5 cut(s)	171, 179, 312, 747, 963
BseNI	ACTGG	1 cut(s)	744
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	379, 497, 739
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	205, 578, 615
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	160, 245
BslFI	GGGAC	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	159, 250, 508, 611
BsmAI	GTCTC	3 cut(s)	25, 204, 937
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	1 cut(s)	82
BsmI	GAATGC	2 cut(s)	257, 376
BsnI	GGCC	3 cut(s)	205, 578, 615
Bso31I	GGTCTC	1 cut(s)	25
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	4 cut(s)	445, 497, 708, 942
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	4 cut(s)	146, 206, 208, 271
BspANI	GGCC	3 cut(s)	205, 578, 615
BspCNI	CTCAG	5 cut(s)	172, 178, 313, 748, 964
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	3 cut(s)	88, 243, 703
BspMAI	CTGCAG	2 cut(s)	397, 487
BspMI	ACCTGC	2 cut(s)	841, 859
BspPI	GGATC	2 cut(s)	440, 492
BspQI	GCTCTTC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	744
BssECI	CCNNGG	3 cut(s)	89, 206, 616
BssMI	GATC	4 cut(s)	445, 497, 708, 942
BssNI	GRCGYC	1 cut(s)	194
Bst2UI	CCWGG	3 cut(s)	91, 660, 811
Bst4CI	ACNGT	2 cut(s)	34, 434
Bst6I	CTCTTC	4 cut(s)	337, 488, 633, 897
BstACI	GRCGYC	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	722
BstC8I	GCNNGC	3 cut(s)	422, 576, 690
BstDEI	CTNAG	6 cut(s)	165, 180, 321, 756, 956, 972
BstDSI	CCRYGG	2 cut(s)	206, 616
BstF5I	GGATG	3 cut(s)	23, 343, 928
BstFNI	CGCG	1 cut(s)	208
BstHHI	GCGC	2 cut(s)	376, 793
BstKTI	GATC	4 cut(s)	448, 500, 711, 945
BstMAI	GTCTC	3 cut(s)	25, 204, 937
BstMBI	GATC	4 cut(s)	445, 497, 708, 942
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	1 cut(s)	995
BstNI	CCWGG	3 cut(s)	91, 660, 811
BstSCI	CCNGG	4 cut(s)	89, 243, 658, 809
BstSFI	CTRYAG	2 cut(s)	393, 483
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	379, 497, 739
BstX2I	RGATCY	2 cut(s)	445, 497
BstYI	RGATCY	2 cut(s)	445, 497
BstZI	CGGCCG	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	205, 578, 615
BtgI	CCRYGG	2 cut(s)	206, 616
BtsCI	GGATG	3 cut(s)	23, 343, 928
BveI	ACCTGC	2 cut(s)	841, 859
Cac8I	GCNNGC	3 cut(s)	422, 576, 690
CfoI	GCGC	2 cut(s)	376, 793
Cfr13I	GGNCC	2 cut(s)	86, 241
Cfr42I	CCGCGG	1 cut(s)	209
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	5 cut(s)	82, 624, 683, 760, 1025
CviAII	CATG	2 cut(s)	899, 950
CviQI	GTAC	5 cut(s)	82, 624, 683, 760, 1025
DdeI	CTNAG	6 cut(s)	165, 180, 321, 756, 956, 972
DpnI	GATC	4 cut(s)	447, 499, 710, 944
DpnII	GATC	4 cut(s)	445, 497, 708, 942
EaeI	YGGCCR	2 cut(s)	203, 613
EagI	CGGCCG	1 cut(s)	203
Eam1104I	CTCTTC	4 cut(s)	337, 488, 633, 897
EarI	CTCTTC	4 cut(s)	337, 488, 633, 897
EclXI	CGGCCG	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	2 cut(s)	86, 241
Eco52I	CGGCCG	1 cut(s)	203
Eco57I	CTGAAG	3 cut(s)	350, 612, 938
EcoRII	CCWGG	3 cut(s)	89, 658, 809
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	902, 953
FaiI	YATR	9 cut(s)	239, 264, 297, 401, 789, 848, 865, 900, 951
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	2 cut(s)	898, 949
FblI	GTMKAC	2 cut(s)	111, 890
Fnu4HI	GCNGC	4 cut(s)	206, 393, 486, 753
FokI	GGATG	3 cut(s)	10, 350, 935
Fsp4HI	GCNGC	4 cut(s)	206, 393, 486, 753
GlaI	GCGC	2 cut(s)	375, 792
GluI	GCNGC	4 cut(s)	206, 393, 486, 753
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	2 cut(s)	681, 696
HaeIII	GGCC	3 cut(s)	205, 578, 615
HapII	CCGG	2 cut(s)	160, 245
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	2 cut(s)	376, 793
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	902, 953
Hin6I	GCGC	2 cut(s)	374, 791
HinP1I	GCGC	2 cut(s)	374, 791
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	4 cut(s)	156, 163, 515, 830
HpaII	CCGG	2 cut(s)	160, 245
HphI	GGTGA	4 cut(s)	133, 839, 883, 919
Hpy166II	GTNNAC	4 cut(s)	112, 362, 716, 891
Hpy188I	TCNGA	8 cut(s)	47, 181, 337, 369, 475, 520, 556, 973
Hpy188III	TCNNGA	6 cut(s)	67, 153, 160, 428, 567, 940
Hpy8I	GTNNAC	4 cut(s)	112, 362, 716, 891
Hpy99I	CGWCG	3 cut(s)	196, 199, 290
HpyAV	CCTTC	5 cut(s)	573, 618, 719, 913, 946
HpyCH4III	ACNGT	2 cut(s)	34, 434
HpyCH4IV	ACGT	3 cut(s)	194, 470, 721
HpyCH4V	TGCA	7 cut(s)	395, 485, 644, 688, 740, 850, 898
HpyF10VI	GCNNNNNNNGC	1 cut(s)	995
HpyF3I	CTNAG	6 cut(s)	165, 180, 321, 756, 956, 972
HpySE526I	ACGT	3 cut(s)	194, 470, 721
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	902, 953
HspAI	GCGC	2 cut(s)	374, 791
Kpn2I	TCCGGA	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	209
Kzo9I	GATC	4 cut(s)	445, 497, 708, 942
LguI	GCTCTTC	1 cut(s)	337
LmnI	GCTCC	2 cut(s)	677, 961
Lsp1109I	GCAGC	3 cut(s)	379, 497, 739
LweI	GCATC	3 cut(s)	461, 653, 970
MaeII	ACGT	3 cut(s)	194, 470, 721
MaeIII	GTNAC	2 cut(s)	746, 827
MalI	GATC	4 cut(s)	447, 499, 710, 944
MboI	GATC	4 cut(s)	445, 497, 708, 942
MboII	GAAGA	8 cut(s)	223, 226, 324, 447, 505, 620, 914, 922
MflI	RGATCY	2 cut(s)	445, 497
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	101, 534, 632, 967
MlyI	GAGTC	2 cut(s)	157, 824
MnlI	CCTC	5 cut(s)	100, 447, 502, 898, 967
MroI	TCCGGA	1 cut(s)	159
MseI	TTAA	2 cut(s)	782, 795
MspA1I	CMGCKG	2 cut(s)	208, 392
MspI	CCGG	2 cut(s)	160, 245
MspR9I	CCNGG	4 cut(s)	91, 245, 660, 811
Mva1269I	GAATGC	2 cut(s)	257, 376
MvaI	CCWGG	3 cut(s)	91, 660, 811
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	1 cut(s)	995
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	445, 497, 708, 942
NlaIII	CATG	2 cut(s)	902, 953
NlaIV	GGNNCC	3 cut(s)	88, 243, 703
NmeAIII	GCCGAG	1 cut(s)	181
NmuCI	GTSAC	1 cut(s)	827
PaqCI	CACCTGC	1 cut(s)	859
PciSI	GCTCTTC	1 cut(s)	337
PctI	GAATGC	2 cut(s)	257, 376
PfeI	GAWTC	2 cut(s)	156, 515
PflFI	GACNNNGTC	1 cut(s)	196
PfoI	TCCNGGA	2 cut(s)	658, 809
PkrI	GCNGC	4 cut(s)	207, 394, 487, 754
PleI	GAGTC	2 cut(s)	157, 824
PpsI	GAGTC	2 cut(s)	157, 824
Ppu21I	YACGTR	1 cut(s)	722
Psp6I	CCWGG	3 cut(s)	89, 658, 809
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	3 cut(s)	89, 658, 809
PspN4I	GGNNCC	3 cut(s)	88, 243, 703
PspPI	GGNCC	2 cut(s)	86, 241
PstI	CTGCAG	2 cut(s)	397, 487
PsuI	RGATCY	2 cut(s)	445, 497
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	5 cut(s)	83, 625, 684, 761, 1026
RsaNI	GTAC	5 cut(s)	82, 624, 683, 760, 1025
SacII	CCGCGG	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	337
SaqAI	TTAA	2 cut(s)	782, 795
SatI	GCNGC	4 cut(s)	206, 393, 486, 753
Sau3AI	GATC	4 cut(s)	445, 497, 708, 942
Sau96I	GGNCC	2 cut(s)	86, 241
SchI	GAGTC	2 cut(s)	157, 824
ScrFI	CCNGG	4 cut(s)	91, 245, 660, 811
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	3 cut(s)	461, 653, 970
SfcI	CTRYAG	2 cut(s)	393, 483
Sfr303I	CCGCGG	1 cut(s)	209
SgrBI	CCGCGG	1 cut(s)	209
SinI	GGWCC	2 cut(s)	86, 241
SmlI	CTYRAG	1 cut(s)	984
SmoI	CTYRAG	1 cut(s)	984
Sse9I	AATT	4 cut(s)	101, 534, 632, 967
SsiI	CCGC	4 cut(s)	146, 206, 208, 271
StyD4I	CCNGG	4 cut(s)	89, 243, 658, 809
TaaI	ACNGT	2 cut(s)	34, 434
TaiI	ACGT	3 cut(s)	197, 473, 724
TasI	AATT	4 cut(s)	101, 534, 632, 967
TatI	WGTACW	2 cut(s)	623, 682
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	156, 515
Tru1I	TTAA	2 cut(s)	782, 795
Tru9I	TTAA	2 cut(s)	782, 795
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	3 cut(s)	392, 485, 752
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	4 cut(s)	17, 51, 416, 915
TspGWI	ACGGA	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	86, 241
XapI	RAATTY	1 cut(s)	967
XmiI	GTMKAC	2 cut(s)	111, 890
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.