pycom15g01830

RNase H

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
1052336 .. 1054669
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g01830.6

Sequence Viewer

Length: 1122 bp
ATGAACTGCGTGTCGCAGGTCTCGTCGTACGCAGCGGCCATTTTCCGAGCGACAGGTCGTGCCGTAGGAACGAGCTCTCTCTGCGGACCTTCTTCCTGGAAGAGAAGACTCGACCTTTACGCCGGGATTAAGCCGATCAGCATAGAATCAGCGCTAACGACATTTCGTATTCAGCCGTACTCGTCGGCTCGAAGCAGCGGCGAAAGTAAAACGACGCCGTCCCGGTCTCGGCGGAGGAAGGCCGATTCCGAACCGGTTATGGAACCGGAAAAGGAGGGATTCTATGTAGTACGGAAAGGAGATGTCGTCGGCGTTTATCGTAGTTTCAGTGATTGTCAGGCTCAGCTGGGTTCTTCGATATGTGATCCTCCTGTTAGTGTTTACAAAGGGGACTCAATGCCTAAGAGCACTCAAGAATATCTTGCTTCCCGTGGACTTAGGAATGCCCTTTACACTGTAAGAGCTGCAGATTTGAAAGATGATCTTTTTGGCAAGCTTGTGCTTTGCCCACTTCAAGGTCCAACAGAAGGTGGAACATCTGTTATCGATGAATCGAAAAAGAGACCCCGTCAAGTGTCTGGAACGGAAAATGTGGAAAGAAATGGTTCAACTTCCATATCAGATGATCCGTCTAGAAAGCTTGCCAAGATAGATGAGTCTGCTCTGGCTGAATTACCCCCTTTGGACCGTGGTGCATGTACTCTTCATTTTGATGGTGCATCAAAAGGAAACCCTGGAATAGCTGGTGCCGGAGCTGTGCTGCGAGCAGAAGATGGAAGATTGATCTGTAAAATACGTGAAGGTCTGGGTGTTGTAACCAATAATGTCGCCGAGTACCGAGCTGTTATTTTAGGGTTAAAATGTGCTCTTAAAAAAGGTTTTACAAGGATTACTATCCAAGGCGACTCCAAACTCGTGTGTATGCAGGTTCAGGGTTTATGGAAGGTGAAAAACCAGAACTTGTCTGATTTGTACGAAGAGGTGAAGAAACTGAAGGATAAATTTCTCTCCTTCAAAATCAGCCATGTCCTAAGGGAAAGAAACTCTGAGGCAGATGCTCAAGCAAACTTGGCAATCACTCTTGCTGATGGTCAAGTCCAGGAGGAGGAGTGCGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

40.45

Weight (kDa)

9.11

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 7, 916
AccB1I GGYRCC 1 cut(s) 746
AciI CCGC 5 cut(s) 35, 84, 198, 232, 1113
AclWI GGATC 2 cut(s) 359, 620
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 1001
AcuI CTGAAG 1 cut(s) 1013
AcyI GRCGYC 1 cut(s) 215
AfaI GTAC 6 cut(s) 29, 179, 291, 700, 836, 974
AfeI AGCGCT 1 cut(s) 153
AfiI CCNNNNNNNGG 4 cut(s) 228, 515, 527, 1105
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 4 cut(s) 475, 515, 609, 1015
AjnI CCWGG 3 cut(s) 95, 733, 1098
AluBI AGCT 8 cut(s) 75, 346, 464, 496, 640, 743, 755, 842
AluI AGCT 8 cut(s) 75, 346, 464, 496, 640, 743, 755, 842
Alw21I GWGCWC 3 cut(s) 77, 410, 868
Alw26I GTCTC 3 cut(s) 25, 231, 556
AlwI GGATC 2 cut(s) 359, 620
Aor51HI AGCGCT 1 cut(s) 153
AoxI GGCC 2 cut(s) 36, 240
ApeKI GCWGC 4 cut(s) 32, 195, 464, 760
ApoI RAATTY 1 cut(s) 1001
AsiGI ACCGGT 1 cut(s) 253
Asp700I GAANNNNTTC 1 cut(s) 604
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 3 cut(s) 86, 518, 685
AsuC2I CCSGG 2 cut(s) 124, 223
AsuHPI GGTGA 2 cut(s) 958, 994
AvaII GGWCC 3 cut(s) 86, 518, 685
AxyI CCTNAGG 1 cut(s) 1031
BanI GGYRCC 1 cut(s) 746
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 1 cut(s) 914
BbsI GAAGAC 1 cut(s) 112
Bbv12I GWGCWC 3 cut(s) 77, 410, 868
BbvI GCAGC 4 cut(s) 44, 207, 451, 747
BccI CCATC 3 cut(s) 707, 767, 1082
BceAI ACGGC 3 cut(s) 47, 160, 202
BciT130I CCWGG 3 cut(s) 97, 735, 1100
BcnI CCSGG 2 cut(s) 124, 223
BcoDI GTCTC 3 cut(s) 25, 231, 556
BfaI CTAG 1 cut(s) 633
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 155
BfuAI ACCTGC 2 cut(s) 7, 916
BisI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 761
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 6 cut(s) 34, 37, 197, 200, 466, 762
Bme1390I CCNGG 5 cut(s) 97, 124, 223, 735, 1100
Bme18I GGWCC 3 cut(s) 86, 518, 685
BmgT120I GGNCC 3 cut(s) 86, 518, 685
BmiI GGNNCC 2 cut(s) 264, 748
BmrFI CCNGG 5 cut(s) 97, 124, 223, 735, 1100
BmsI GCATC 2 cut(s) 728, 1045
BpiI GAAGAC 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 342
BpuEI CTTGAG 2 cut(s) 396, 1044
BpuMI CCSGG 2 cut(s) 124, 223
Bsa29I ATCGAT 1 cut(s) 546
BsaAI YACGTR 1 cut(s) 797
BsaBI GATNNNNATC 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 215
BsaI GGTCTC 3 cut(s) 25, 231, 556
BsaJI CCNNGG 4 cut(s) 430, 688, 733, 898
BsaWI WCCGGW 2 cut(s) 253, 265
BsaXI ACNNNNNCTCC 3 cut(s) 291, 321, 1094
Bsc4I CCNNNNNNNGG 4 cut(s) 228, 515, 527, 1105
Bse118I RCCGGY 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 1031
Bse8I GATNNNNATC 1 cut(s) 893
BseBI CCWGG 3 cut(s) 97, 735, 1100
BseCI ATCGAT 1 cut(s) 546
BseDI CCNNGG 4 cut(s) 430, 688, 733, 898
BseJI GATNNNNATC 1 cut(s) 893
BseLI CCNNNNNNNGG 4 cut(s) 228, 515, 527, 1105
BseMII CTCAG 2 cut(s) 356, 1038
BseRI GAGGAG 2 cut(s) 1118, 1121
BseXI GCAGC 4 cut(s) 44, 207, 451, 747
BseYI CCCAGC 1 cut(s) 346
BshFI GGCC 2 cut(s) 38, 242
BshNI GGYRCC 1 cut(s) 746
BshTI ACCGGT 1 cut(s) 253
BshVI ATCGAT 1 cut(s) 546
BsiHKAI GWGCWC 3 cut(s) 77, 410, 868
BsiSI CCGG 5 cut(s) 123, 223, 254, 266, 750
BsiWI CGTACG 1 cut(s) 27
BslFI GGGAC 2 cut(s) 205, 404
BslI CCNNNNNNNGG 4 cut(s) 228, 515, 527, 1105
BsmAI GTCTC 3 cut(s) 25, 231, 556
BsmFI GGGAC 2 cut(s) 205, 404
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 2 cut(s) 38, 242
Bso31I GGTCTC 3 cut(s) 25, 231, 556
Bsp1286I GDGCHC 3 cut(s) 77, 410, 868
Bsp143I GATC 5 cut(s) 135, 364, 481, 625, 783
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 5 cut(s) 35, 84, 198, 232, 1113
BspANI GGCC 2 cut(s) 38, 242
BspCNI CTCAG 2 cut(s) 355, 1039
BspDI ATCGAT 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 264, 748
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 2 cut(s) 7, 916
BspPI GGATC 2 cut(s) 359, 620
BspT107I GGYRCC 1 cut(s) 746
BspTNI GGTCTC 3 cut(s) 25, 231, 556
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 430, 688, 733, 898
BssMI GATC 5 cut(s) 135, 364, 481, 625, 783
BssNI GRCGYC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 898
Bst2BI CACGAG 1 cut(s) 914
Bst2UI CCWGG 3 cut(s) 97, 735, 1100
Bst4CI ACNGT 2 cut(s) 457, 689
Bst6I CTCTTC 3 cut(s) 95, 708, 972
BstACI GRCGYC 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 797
BstC8I GCNNGC 3 cut(s) 494, 642, 765
BstDEI CTNAG 5 cut(s) 342, 402, 437, 1031, 1047
BstDSI CCRYGG 2 cut(s) 430, 688
BstH2I RGCGCY 1 cut(s) 155
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 5 cut(s) 138, 367, 484, 628, 786
BstMAI GTCTC 3 cut(s) 25, 231, 556
BstMBI GATC 5 cut(s) 135, 364, 481, 625, 783
BstMWI GCNNNNNNNGC 2 cut(s) 81, 1070
BstNI CCWGG 3 cut(s) 97, 735, 1100
BstNSI RCATGY 1 cut(s) 699
BstSCI CCNGG 5 cut(s) 95, 122, 221, 733, 1098
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 44, 207, 451, 747
BstV2I GAAGAC 1 cut(s) 112
Bsu15I ATCGAT 1 cut(s) 546
Bsu36I CCTNAGG 1 cut(s) 1031
BsuRI GGCC 2 cut(s) 38, 242
BsuTUI ATCGAT 1 cut(s) 546
BtgI CCRYGG 2 cut(s) 430, 688
BtsIMutI CAGTG 2 cut(s) 334, 453
BveI ACCTGC 2 cut(s) 7, 916
Cac8I GCNNGC 3 cut(s) 494, 642, 765
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 86, 518, 685
ClaI ATCGAT 1 cut(s) 546
CseI GACGC 1 cut(s) 223
Csp6I GTAC 6 cut(s) 28, 178, 290, 699, 835, 973
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 2 cut(s) 696, 1025
CviQI GTAC 6 cut(s) 28, 178, 290, 699, 835, 973
DdeI CTNAG 5 cut(s) 342, 402, 437, 1031, 1047
DpnI GATC 5 cut(s) 137, 366, 483, 627, 785
DpnII GATC 5 cut(s) 135, 364, 481, 625, 783
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 95, 708, 972
EarI CTCTTC 3 cut(s) 95, 708, 972
EciI GGCGGA 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 898
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 3 cut(s) 25, 231, 556
Eco47I GGWCC 3 cut(s) 86, 518, 685
Eco47III AGCGCT 1 cut(s) 153
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 1013
Eco81I CCTNAGG 1 cut(s) 1031
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 3 cut(s) 95, 733, 1098
EcoT14I CCWWGG 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 898
FaeI CATG 2 cut(s) 699, 1028
FaiI YATR 9 cut(s) 143, 260, 285, 361, 617, 697, 923, 940, 1026
FalI AAGNNNNNCTT 4 cut(s) 405, 437, 468, 500
FaqI GGGAC 2 cut(s) 205, 404
FatI CATG 2 cut(s) 695, 1024
FauI CCCGC 1 cut(s) 1106
Fnu4HI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 761
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 761
FspBI CTAG 1 cut(s) 633
GlaI GCGC 1 cut(s) 153
GluI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 761
GsaI CCCAGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 155
HaeIII GGCC 2 cut(s) 38, 242
HapII CCGG 5 cut(s) 123, 223, 254, 266, 750
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 215
Hin1II CATG 2 cut(s) 699, 1028
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HindIII AAGCTT 2 cut(s) 494, 638
HinfI GANTC 8 cut(s) 108, 146, 245, 279, 392, 551, 656, 905
HpaII CCGG 5 cut(s) 123, 223, 254, 266, 750
HphI GGTGA 2 cut(s) 958, 994
Hpy166II GTNNAC 2 cut(s) 382, 434
Hpy188I TCNGA 5 cut(s) 47, 250, 622, 967, 1048
Hpy188III TCNNGA 3 cut(s) 413, 579, 633
Hpy8I GTNNAC 2 cut(s) 382, 434
Hpy99I CGWCG 4 cut(s) 28, 187, 217, 311
HpyAV CCTTC 7 cut(s) 99, 232, 521, 794, 937, 988, 1021
HpyCH4III ACNGT 2 cut(s) 457, 689
HpyCH4IV ACGT 1 cut(s) 796
HpyCH4V TGCA 4 cut(s) 467, 695, 719, 925
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 1070
HpyF3I CTNAG 5 cut(s) 342, 402, 437, 1031, 1047
HpySE526I ACGT 1 cut(s) 796
Hsp92I GRCGYC 1 cut(s) 215
Hsp92II CATG 2 cut(s) 699, 1028
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 5 cut(s) 135, 364, 481, 625, 783
LmnI GCTCC 1 cut(s) 752
Lsp1109I GCAGC 4 cut(s) 44, 207, 451, 747
LweI GCATC 2 cut(s) 728, 1045
MaeI CTAG 1 cut(s) 633
MaeII ACGT 1 cut(s) 796
MaeIII GTNAC 1 cut(s) 814
MalI GATC 5 cut(s) 137, 366, 483, 627, 785
MboI GATC 5 cut(s) 135, 364, 481, 625, 783
MboII GAAGA 9 cut(s) 84, 112, 117, 345, 695, 782, 789, 989, 997
MhlI GDGCHC 3 cut(s) 77, 410, 868
MluCI AATT 2 cut(s) 671, 1001
MlyI GAGTC 4 cut(s) 102, 386, 665, 899
MmeI TCCRAC 1 cut(s) 545
MnlI CCTC 7 cut(s) 228, 268, 378, 973, 1042, 1096, 1099
MroXI GAANNNNTTC 1 cut(s) 604
MseI TTAA 3 cut(s) 129, 857, 870
MslI CAYNNNNRTG 1 cut(s) 711
MspA1I CMGCKG 3 cut(s) 35, 198, 346
MspI CCGG 5 cut(s) 123, 223, 254, 266, 750
MspR9I CCNGG 5 cut(s) 97, 124, 223, 735, 1100
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 3 cut(s) 97, 735, 1100
MwoI GCNNNNNNNGC 2 cut(s) 81, 1070
NciI CCSGG 2 cut(s) 124, 223
NdeII GATC 5 cut(s) 135, 364, 481, 625, 783
NlaIII CATG 2 cut(s) 699, 1028
NlaIV GGNNCC 2 cut(s) 264, 748
NmeAIII GCCGAG 2 cut(s) 208, 856
NspI RCATGY 1 cut(s) 699
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 448
PdmI GAANNNNTTC 1 cut(s) 604
PfeI GAWTC 4 cut(s) 146, 245, 279, 551
Pfl23II CGTACG 1 cut(s) 27
PflFI GACNNNGTC 2 cut(s) 217, 567
PfoI TCCNGGA 2 cut(s) 95, 1098
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 6 cut(s) 34, 37, 197, 200, 466, 762
PleI GAGTC 4 cut(s) 102, 386, 664, 899
PpsI GAGTC 4 cut(s) 102, 386, 664, 899
Ppu21I YACGTR 1 cut(s) 797
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 95, 733, 1098
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 3 cut(s) 95, 733, 1098
PspLI CGTACG 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 264, 748
PspPI GGNCC 3 cut(s) 86, 518, 685
PstI CTGCAG 1 cut(s) 469
PsyI GACNNNGTC 2 cut(s) 217, 567
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 6 cut(s) 29, 179, 291, 700, 836, 974
RsaNI GTAC 6 cut(s) 28, 178, 290, 699, 835, 973
RseI CAYNNNNRTG 1 cut(s) 711
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 129, 857, 870
SatI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 761
Sau3AI GATC 5 cut(s) 135, 364, 481, 625, 783
Sau96I GGNCC 3 cut(s) 86, 518, 685
SchI GAGTC 4 cut(s) 102, 386, 665, 899
ScrFI CCNGG 5 cut(s) 97, 124, 223, 735, 1100
SduI GDGCHC 3 cut(s) 77, 410, 868
SfaNI GCATC 2 cut(s) 728, 1045
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 3 cut(s) 86, 518, 685
SmiMI CAYNNNNRTG 1 cut(s) 711
SmlI CTYRAG 2 cut(s) 411, 1059
SmoI CTYRAG 2 cut(s) 411, 1059
Sse9I AATT 2 cut(s) 671, 1001
SsiI CCGC 5 cut(s) 35, 84, 198, 232, 1113
SspMI CTAG 1 cut(s) 633
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 5 cut(s) 95, 122, 221, 733, 1098
StyI CCWWGG 1 cut(s) 898
TaaI ACNGT 2 cut(s) 457, 689
TaiI ACGT 1 cut(s) 799
TaqI TCGA 5 cut(s) 111, 190, 356, 546, 554
TasI AATT 2 cut(s) 671, 1001
TatI WGTACW 1 cut(s) 698
TauI GCSGC 2 cut(s) 38, 201
TfiI GAWTC 4 cut(s) 146, 245, 279, 551
Tru1I TTAA 3 cut(s) 129, 857, 870
Tru9I TTAA 3 cut(s) 129, 857, 870
TscAI CASTG 2 cut(s) 334, 460
TseI GCWGC 4 cut(s) 32, 195, 464, 760
TspDTI ATGAA 3 cut(s) 17, 564, 695
TspGWI ACGGA 3 cut(s) 307, 599, 618
TspRI CASTG 2 cut(s) 334, 460
Tth111I GACNNNGTC 2 cut(s) 217, 567
VpaK11BI GGWCC 3 cut(s) 86, 518, 685
XapI RAATTY 1 cut(s) 1001
XbaI TCTAGA 1 cut(s) 632
XceI RCATGY 1 cut(s) 699
XmnI GAANNNNTTC 1 cut(s) 604
XspI CTAG 1 cut(s) 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.