RNase H
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 |
| malus_domestica | MD15G1022000.v1.1 MD16G1087400.v1.1 |
| prunus_persica | Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 |
| pyrus_communis | pycom09g11760 pycom15g01830 pycom16g07500 |
| rosa_chinensis | RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731 |
| rosa_laevigata | RLG00000005828 RLG00000011227 RLG00000015316 |
| rosa_roxburghii | Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360 |
| rosa_rugosa | Rorug03G0154200 |
| rosa_samantha | Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200 |
| rosa_wichuraiana | Rw4G035520 Rw6G002360 Rw6G036440 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 574 |
| Acc36I | ACCTGC | 2 cut(s) | 7, 919 |
| AciI | CCGC | 8 cut(s) | 35, 84, 152, 198, 201, 232, 537, 1113 |
| AclI | AACGTT | 1 cut(s) | 782 |
| AclWI | GGATC | 3 cut(s) | 359, 512, 623 |
| AcoI | YGGCCR | 1 cut(s) | 36 |
| AcsI | RAATTY | 1 cut(s) | 1004 |
| AcuI | CTGAAG | 1 cut(s) | 1016 |
| AcyI | GRCGYC | 2 cut(s) | 215, 571 |
| AfaI | GTAC | 3 cut(s) | 179, 291, 839 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 228 |
| AgeI | ACCGGT | 1 cut(s) | 253 |
| AgsI | TTSAA | 2 cut(s) | 475, 1018 |
| AjnI | CCWGG | 3 cut(s) | 95, 736, 1101 |
| AluBI | AGCT | 8 cut(s) | 75, 346, 464, 496, 643, 746, 758, 845 |
| AluI | AGCT | 8 cut(s) | 75, 346, 464, 496, 643, 746, 758, 845 |
| Alw21I | GWGCWC | 3 cut(s) | 77, 410, 871 |
| Alw26I | GTCTC | 4 cut(s) | 25, 231, 562, 985 |
| AlwI | GGATC | 3 cut(s) | 359, 512, 623 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 758 |
| AoxI | GGCC | 2 cut(s) | 36, 240 |
| ApeKI | GCWGC | 4 cut(s) | 32, 195, 464, 763 |
| ApoI | RAATTY | 1 cut(s) | 1004 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 40, 72, 99, 131 |
| AsiGI | ACCGGT | 1 cut(s) | 253 |
| AspLEI | GCGC | 1 cut(s) | 122 |
| AspS9I | GGNCC | 3 cut(s) | 86, 688, 1099 |
| AsuC2I | CCSGG | 2 cut(s) | 124, 223 |
| AsuHPI | GGTGA | 2 cut(s) | 961, 997 |
| AvaII | GGWCC | 3 cut(s) | 86, 688, 1099 |
| AxyI | CCTNAGG | 1 cut(s) | 1034 |
| BanII | GRGCYC | 1 cut(s) | 77 |
| BauI | CACGAG | 1 cut(s) | 917 |
| Bbv12I | GWGCWC | 3 cut(s) | 77, 410, 871 |
| BbvI | GCAGC | 4 cut(s) | 44, 207, 451, 750 |
| BccI | CCATC | 3 cut(s) | 710, 770, 1085 |
| BceAI | ACGGC | 3 cut(s) | 47, 160, 202 |
| BciT130I | CCWGG | 3 cut(s) | 97, 738, 1103 |
| BcnI | CCSGG | 2 cut(s) | 124, 223 |
| BcoDI | GTCTC | 4 cut(s) | 25, 231, 562, 985 |
| BfmI | CTRYAG | 1 cut(s) | 465 |
| BfuAI | ACCTGC | 2 cut(s) | 7, 919 |
| BisI | GCNGC | 6 cut(s) | 33, 36, 196, 199, 465, 764 |
| BlpI | GCTNAGC | 1 cut(s) | 342 |
| BlsI | GCNGC | 6 cut(s) | 34, 37, 197, 200, 466, 765 |
| Bme1390I | CCNGG | 5 cut(s) | 97, 124, 223, 738, 1103 |
| Bme18I | GGWCC | 3 cut(s) | 86, 688, 1099 |
| BmgT120I | GGNCC | 3 cut(s) | 86, 688, 1099 |
| BmiI | GGNNCC | 1 cut(s) | 264 |
| BmrFI | CCNGG | 5 cut(s) | 97, 124, 223, 738, 1103 |
| BmsI | GCATC | 3 cut(s) | 434, 731, 1048 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 342 |
| BpuEI | CTTGAG | 1 cut(s) | 1047 |
| BpuMI | CCSGG | 2 cut(s) | 124, 223 |
| BsaAI | YACGTR | 1 cut(s) | 800 |
| BsaHI | GRCGYC | 2 cut(s) | 215, 571 |
| BsaI | GGTCTC | 2 cut(s) | 25, 231 |
| BsaJI | CCNNGG | 4 cut(s) | 430, 691, 736, 901 |
| BsaWI | WCCGGW | 2 cut(s) | 253, 265 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 291, 321 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 228 |
| Bse118I | RCCGGY | 1 cut(s) | 253 |
| Bse21I | CCTNAGG | 1 cut(s) | 1034 |
| BseBI | CCWGG | 3 cut(s) | 97, 738, 1103 |
| BseDI | CCNNGG | 4 cut(s) | 430, 691, 736, 901 |
| BseGI | GGATG | 3 cut(s) | 425, 542, 559 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 228 |
| BseMII | CTCAG | 2 cut(s) | 356, 1041 |
| BseRI | GAGGAG | 2 cut(s) | 13, 1121 |
| BseXI | GCAGC | 4 cut(s) | 44, 207, 451, 750 |
| BseYI | CCCAGC | 1 cut(s) | 346 |
| BsgI | GTGCAG | 1 cut(s) | 771 |
| BshFI | GGCC | 2 cut(s) | 38, 242 |
| BshTI | ACCGGT | 1 cut(s) | 253 |
| BsiHKAI | GWGCWC | 3 cut(s) | 77, 410, 871 |
| BsiSI | CCGG | 4 cut(s) | 123, 223, 254, 266 |
| BslFI | GGGAC | 2 cut(s) | 205, 404 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 228 |
| BsmAI | GTCTC | 4 cut(s) | 25, 231, 562, 985 |
| BsmBI | CGTCTC | 1 cut(s) | 562 |
| BsmFI | GGGAC | 2 cut(s) | 205, 404 |
| BsmI | GAATGC | 1 cut(s) | 448 |
| BsnI | GGCC | 2 cut(s) | 38, 242 |
| Bso31I | GGTCTC | 2 cut(s) | 25, 231 |
| Bsp1286I | GDGCHC | 3 cut(s) | 77, 410, 871 |
| Bsp143I | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 342 |
| BspACI | CCGC | 8 cut(s) | 35, 84, 152, 198, 201, 232, 537, 1113 |
| BspANI | GGCC | 2 cut(s) | 38, 242 |
| BspCNI | CTCAG | 2 cut(s) | 355, 1042 |
| BspLI | GGNNCC | 1 cut(s) | 264 |
| BspMAI | CTGCAG | 1 cut(s) | 469 |
| BspMI | ACCTGC | 2 cut(s) | 7, 919 |
| BspPI | GGATC | 3 cut(s) | 359, 512, 623 |
| BspTNI | GGTCTC | 2 cut(s) | 25, 231 |
| BsrFI | RCCGGY | 1 cut(s) | 253 |
| BssAI | RCCGGY | 1 cut(s) | 253 |
| BssECI | CCNNGG | 4 cut(s) | 430, 691, 736, 901 |
| BssMI | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| BssNI | GRCGYC | 2 cut(s) | 215, 571 |
| BssSI | CACGAG | 1 cut(s) | 917 |
| BssT1I | CCWWGG | 1 cut(s) | 901 |
| Bst2BI | CACGAG | 1 cut(s) | 917 |
| Bst2UI | CCWGG | 3 cut(s) | 97, 738, 1103 |
| Bst4CI | ACNGT | 2 cut(s) | 692, 898 |
| Bst6I | CTCTTC | 2 cut(s) | 975, 983 |
| BstACI | GRCGYC | 2 cut(s) | 215, 571 |
| BstBAI | YACGTR | 1 cut(s) | 800 |
| BstC8I | GCNNGC | 3 cut(s) | 494, 645, 768 |
| BstDEI | CTNAG | 5 cut(s) | 342, 402, 437, 1034, 1050 |
| BstDSI | CCRYGG | 2 cut(s) | 430, 691 |
| BstF5I | GGATG | 3 cut(s) | 425, 542, 559 |
| BstHHI | GCGC | 1 cut(s) | 122 |
| BstKTI | GATC | 6 cut(s) | 138, 367, 484, 520, 631, 789 |
| BstMAI | GTCTC | 4 cut(s) | 25, 231, 562, 985 |
| BstMBI | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 81, 1073 |
| BstNI | CCWGG | 3 cut(s) | 97, 738, 1103 |
| BstSCI | CCNGG | 5 cut(s) | 95, 122, 221, 736, 1101 |
| BstSFI | CTRYAG | 1 cut(s) | 465 |
| BstV1I | GCAGC | 4 cut(s) | 44, 207, 451, 750 |
| BstX2I | RGATCY | 1 cut(s) | 517 |
| BstYI | RGATCY | 1 cut(s) | 517 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1034 |
| BsuRI | GGCC | 2 cut(s) | 38, 242 |
| BtgI | CCRYGG | 2 cut(s) | 430, 691 |
| BtsCI | GGATG | 3 cut(s) | 425, 542, 559 |
| BtsIMutI | CAGTG | 1 cut(s) | 334 |
| BveI | ACCTGC | 2 cut(s) | 7, 919 |
| Cac8I | GCNNGC | 3 cut(s) | 494, 645, 768 |
| CaiI | CAGNNNCTG | 1 cut(s) | 758 |
| CfoI | GCGC | 1 cut(s) | 122 |
| Cfr10I | RCCGGY | 1 cut(s) | 253 |
| Cfr13I | GGNCC | 3 cut(s) | 86, 688, 1099 |
| CseI | GACGC | 1 cut(s) | 223 |
| Csp6I | GTAC | 3 cut(s) | 178, 290, 838 |
| CspAI | ACCGGT | 1 cut(s) | 253 |
| CviAII | CATG | 1 cut(s) | 1028 |
| CviQI | GTAC | 3 cut(s) | 178, 290, 838 |
| DdeI | CTNAG | 5 cut(s) | 342, 402, 437, 1034, 1050 |
| DpnI | GATC | 6 cut(s) | 137, 366, 483, 519, 630, 788 |
| DpnII | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| EaeI | YGGCCR | 1 cut(s) | 36 |
| Eam1104I | CTCTTC | 2 cut(s) | 975, 983 |
| EarI | CTCTTC | 2 cut(s) | 975, 983 |
| EciI | GGCGGA | 3 cut(s) | 216, 247, 552 |
| Ecl136II | GAGCTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 1 cut(s) | 901 |
| Eco24I | GRGCYC | 1 cut(s) | 77 |
| Eco31I | GGTCTC | 2 cut(s) | 25, 231 |
| Eco47I | GGWCC | 3 cut(s) | 86, 688, 1099 |
| Eco53kI | GAGCTC | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 1016 |
| Eco81I | CCTNAGG | 1 cut(s) | 1034 |
| EcoICRI | GAGCTC | 1 cut(s) | 75 |
| EcoRII | CCWGG | 3 cut(s) | 95, 736, 1101 |
| EcoT14I | CCWWGG | 1 cut(s) | 901 |
| EcoT38I | GRGCYC | 1 cut(s) | 77 |
| ErhI | CCWWGG | 1 cut(s) | 901 |
| Esp3I | CGTCTC | 1 cut(s) | 562 |
| FaeI | CATG | 1 cut(s) | 1031 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 468, 500 |
| FaqI | GGGAC | 2 cut(s) | 205, 404 |
| FatI | CATG | 1 cut(s) | 1027 |
| FauI | CCCGC | 1 cut(s) | 1106 |
| Fnu4HI | GCNGC | 6 cut(s) | 33, 36, 196, 199, 465, 764 |
| FokI | GGATG | 3 cut(s) | 412, 529, 566 |
| FriOI | GRGCYC | 1 cut(s) | 77 |
| Fsp4HI | GCNGC | 6 cut(s) | 33, 36, 196, 199, 465, 764 |
| GlaI | GCGC | 1 cut(s) | 121 |
| GluI | GCNGC | 6 cut(s) | 33, 36, 196, 199, 465, 764 |
| GsaI | CCCAGC | 1 cut(s) | 350 |
| HaeIII | GGCC | 2 cut(s) | 38, 242 |
| HapII | CCGG | 4 cut(s) | 123, 223, 254, 266 |
| HgaI | GACGC | 1 cut(s) | 223 |
| HhaI | GCGC | 1 cut(s) | 122 |
| Hin1I | GRCGYC | 2 cut(s) | 215, 571 |
| Hin1II | CATG | 1 cut(s) | 1031 |
| Hin6I | GCGC | 1 cut(s) | 120 |
| HinP1I | GCGC | 1 cut(s) | 120 |
| HindIII | AAGCTT | 2 cut(s) | 494, 641 |
| HinfI | GANTC | 8 cut(s) | 108, 146, 245, 279, 392, 557, 659, 908 |
| HpaII | CCGG | 4 cut(s) | 123, 223, 254, 266 |
| HphI | GGTGA | 2 cut(s) | 961, 997 |
| Hpy166II | GTNNAC | 2 cut(s) | 382, 434 |
| Hpy188I | TCNGA | 7 cut(s) | 47, 68, 250, 532, 625, 970, 1051 |
| Hpy188III | TCNNGA | 2 cut(s) | 582, 636 |
| Hpy8I | GTNNAC | 2 cut(s) | 382, 434 |
| Hpy99I | CGWCG | 4 cut(s) | 68, 187, 217, 311 |
| HpyAV | CCTTC | 7 cut(s) | 99, 232, 527, 797, 940, 991, 1024 |
| HpyCH4III | ACNGT | 2 cut(s) | 692, 898 |
| HpyCH4IV | ACGT | 3 cut(s) | 571, 782, 799 |
| HpyCH4V | TGCA | 5 cut(s) | 425, 467, 722, 752, 928 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 81, 1073 |
| HpyF3I | CTNAG | 5 cut(s) | 342, 402, 437, 1034, 1050 |
| HpySE526I | ACGT | 3 cut(s) | 571, 782, 799 |
| Hsp92I | GRCGYC | 2 cut(s) | 215, 571 |
| Hsp92II | CATG | 1 cut(s) | 1031 |
| HspAI | GCGC | 1 cut(s) | 120 |
| Kzo9I | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| LmnI | GCTCC | 1 cut(s) | 755 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 207, 451, 750 |
| LweI | GCATC | 3 cut(s) | 434, 731, 1048 |
| MaeII | ACGT | 3 cut(s) | 571, 782, 799 |
| MaeIII | GTNAC | 2 cut(s) | 154, 817 |
| MalI | GATC | 6 cut(s) | 137, 366, 483, 519, 630, 788 |
| MboI | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| MboII | GAAGA | 8 cut(s) | 84, 112, 345, 519, 611, 698, 992, 1000 |
| MflI | RGATCY | 1 cut(s) | 517 |
| MhlI | GDGCHC | 3 cut(s) | 77, 410, 871 |
| MluCI | AATT | 2 cut(s) | 674, 1004 |
| MlyI | GAGTC | 4 cut(s) | 102, 386, 668, 902 |
| MmeI | TCCRAC | 2 cut(s) | 46, 545 |
| MnlI | CCTC | 7 cut(s) | 34, 228, 268, 378, 976, 1045, 1099 |
| MseI | TTAA | 3 cut(s) | 129, 860, 873 |
| MslI | CAYNNNNRTG | 1 cut(s) | 714 |
| MspA1I | CMGCKG | 4 cut(s) | 35, 152, 198, 346 |
| MspI | CCGG | 4 cut(s) | 123, 223, 254, 266 |
| MspR9I | CCNGG | 5 cut(s) | 97, 124, 223, 738, 1103 |
| Mva1269I | GAATGC | 1 cut(s) | 448 |
| MvaI | CCWGG | 3 cut(s) | 97, 738, 1103 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 81, 1073 |
| NciI | CCSGG | 2 cut(s) | 124, 223 |
| NdeII | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| NlaIII | CATG | 1 cut(s) | 1031 |
| NlaIV | GGNNCC | 1 cut(s) | 264 |
| NmeAIII | GCCGAG | 2 cut(s) | 208, 859 |
| NmuCI | GTSAC | 1 cut(s) | 817 |
| PctI | GAATGC | 1 cut(s) | 448 |
| PfeI | GAWTC | 4 cut(s) | 146, 245, 279, 557 |
| PflFI | GACNNNGTC | 1 cut(s) | 217 |
| PfoI | TCCNGGA | 2 cut(s) | 95, 1101 |
| PinAI | ACCGGT | 1 cut(s) | 253 |
| PkrI | GCNGC | 6 cut(s) | 34, 37, 197, 200, 466, 765 |
| PleI | GAGTC | 4 cut(s) | 102, 386, 667, 902 |
| PpsI | GAGTC | 4 cut(s) | 102, 386, 667, 902 |
| Ppu21I | YACGTR | 1 cut(s) | 800 |
| Psp124BI | GAGCTC | 1 cut(s) | 77 |
| Psp1406I | AACGTT | 1 cut(s) | 782 |
| Psp6I | CCWGG | 3 cut(s) | 95, 736, 1101 |
| PspFI | CCCAGC | 1 cut(s) | 346 |
| PspGI | CCWGG | 3 cut(s) | 95, 736, 1101 |
| PspN4I | GGNNCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 3 cut(s) | 86, 688, 1099 |
| PstI | CTGCAG | 1 cut(s) | 469 |
| PstNI | CAGNNNCTG | 1 cut(s) | 758 |
| PsuI | RGATCY | 1 cut(s) | 517 |
| PsyI | GACNNNGTC | 1 cut(s) | 217 |
| PvuII | CAGCTG | 1 cut(s) | 346 |
| RsaI | GTAC | 3 cut(s) | 179, 291, 839 |
| RsaNI | GTAC | 3 cut(s) | 178, 290, 838 |
| RseI | CAYNNNNRTG | 1 cut(s) | 714 |
| SacI | GAGCTC | 1 cut(s) | 77 |
| SaqAI | TTAA | 3 cut(s) | 129, 860, 873 |
| SatI | GCNGC | 6 cut(s) | 33, 36, 196, 199, 465, 764 |
| Sau3AI | GATC | 6 cut(s) | 135, 364, 481, 517, 628, 786 |
| Sau96I | GGNCC | 3 cut(s) | 86, 688, 1099 |
| SchI | GAGTC | 4 cut(s) | 102, 386, 668, 902 |
| ScrFI | CCNGG | 5 cut(s) | 97, 124, 223, 738, 1103 |
| SduI | GDGCHC | 3 cut(s) | 77, 410, 871 |
| SfaNI | GCATC | 3 cut(s) | 434, 731, 1048 |
| SfcI | CTRYAG | 1 cut(s) | 465 |
| SinI | GGWCC | 3 cut(s) | 86, 688, 1099 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 714 |
| SmlI | CTYRAG | 1 cut(s) | 1062 |
| SmoI | CTYRAG | 1 cut(s) | 1062 |
| Sse9I | AATT | 2 cut(s) | 674, 1004 |
| SsiI | CCGC | 8 cut(s) | 35, 84, 152, 198, 201, 232, 537, 1113 |
| SstI | GAGCTC | 1 cut(s) | 77 |
| StyD4I | CCNGG | 5 cut(s) | 95, 122, 221, 736, 1101 |
| StyI | CCWWGG | 1 cut(s) | 901 |
| TaaI | ACNGT | 2 cut(s) | 692, 898 |
| TaiI | ACGT | 3 cut(s) | 574, 785, 802 |
| TaqI | TCGA | 4 cut(s) | 111, 190, 356, 560 |
| TasI | AATT | 2 cut(s) | 674, 1004 |
| TauI | GCSGC | 2 cut(s) | 38, 201 |
| TfiI | GAWTC | 4 cut(s) | 146, 245, 279, 557 |
| Tru1I | TTAA | 3 cut(s) | 129, 860, 873 |
| Tru9I | TTAA | 3 cut(s) | 129, 860, 873 |
| TscAI | CASTG | 1 cut(s) | 334 |
| TseFI | GTSAC | 1 cut(s) | 817 |
| TseI | GCWGC | 4 cut(s) | 32, 195, 464, 763 |
| Tsp45I | GTSAC | 1 cut(s) | 817 |
| TspDTI | ATGAA | 3 cut(s) | 17, 570, 698 |
| TspGWI | ACGGA | 3 cut(s) | 307, 535, 621 |
| TspRI | CASTG | 1 cut(s) | 334 |
| Tth111I | GACNNNGTC | 1 cut(s) | 217 |
| VpaK11BI | GGWCC | 3 cut(s) | 86, 688, 1099 |
| XapI | RAATTY | 1 cut(s) | 1004 |
| ZraI | GACGTC | 1 cut(s) | 572 |