MD15G1022000.v1.1

RNase H

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
1274575 .. 1277622
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1022000.v1.1.491

Sequence Viewer

Length: 1122 bp
ATGAACTGCTTGTCGCAGGTCTCCTCTTACGCAGCGGCCATTTTCCGAACGACAGGTCGTGCCGTCGGAACGAGCTCTCTCTGCGGACCTTCTTCCTGGAAGAAAAGACTCGACCTTTGCGCCGGGATTAAGCCGATCAGCATAGAATCAGCGGTAACGACATTTCGTATTCAGCCGTACTCGTCGGCTCGAAGCAGCGGCGGAAGTAAAACGACGCCGTCCCGGTCTCGGCGGAGGAAGGCCGATTCCGAACCGGTTATGGAACCGGAAAAGGAGGGATTCTATGTGGTACGGAAAGGAGATGTCGTCGGCGTTTATCGTAGTTTCAGTGATTGTCAGGCTCAGCTGGGTTCTTCGATATGTGATCCTCCTGTTAGTGTTTACAAAGGGGACTCAATGCCTAAGAGCACTCAACAATATCTTGCATCCCGTGGACTTAGGAATGCCCTTTACACTATAAGAGCTGCAGATTTGAAAGATGATCTTTTTGGCAAGCTTGTGCTTTGCCCACTTGGAGATCCAACTTCTTCCGAAGGCGGAACATCCGTTATGGATGAATCGAAAAAGAGACGTCTAATGTCTGGAACAGAAAATGTGGAAGAATATGGCTCAACTTCCATATCAGATGATCCGTCTGGAAAGCTTGCCAAGATAGATGAGTCTGCTGTGGCTGAATTACCCCCTTTGGACCGTGGTGCTTGTATTCTTCATTTTGATGGTGCATCAAAGGGAAACCCTGGAATAGCTGGTGCAGGAGCTGTGCTGCGAGCAGATGATGGAACGTTGATCTGTAAAATACGTGAAGGTCTGGGTGTTGTGACCAATAATGTTGCCGAGTACCGAGCTGTTATTTTAGGGTTAAAATGTGCTCTTAAAAAAGGTTTTACAAGGATTACTGTCCAAGGCGACTCCAAACTCGTGTGTATGCAGGTTCAGGGTTTATGGAAGGTGAAAAACCAGAACTTGTCTGACTTTTACGAAGAGGTGAAGAGACTGAAGGATAAATTTCTCTCCTTCAAAATCAGCCATGTCCTAAGGGAAAGAAACTCTGAGGCAGATGCTCAAGCAAACTTGGCAATCACTCTTGCTGATGGTCAGGTCCAGGAGGAGTGCGGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

40.2

Weight (kDa)

8.93

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RNase_H PF00075 233 - 335 1.6e-09 RNase H
RVT_3 PF13456 238 - 358 3.1e-28 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 574
Acc36I ACCTGC 2 cut(s) 7, 919
AciI CCGC 8 cut(s) 35, 84, 152, 198, 201, 232, 537, 1113
AclI AACGTT 1 cut(s) 782
AclWI GGATC 3 cut(s) 359, 512, 623
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 1004
AcuI CTGAAG 1 cut(s) 1016
AcyI GRCGYC 2 cut(s) 215, 571
AfaI GTAC 3 cut(s) 179, 291, 839
AfiI CCNNNNNNNGG 1 cut(s) 228
AgeI ACCGGT 1 cut(s) 253
AgsI TTSAA 2 cut(s) 475, 1018
AjnI CCWGG 3 cut(s) 95, 736, 1101
AluBI AGCT 8 cut(s) 75, 346, 464, 496, 643, 746, 758, 845
AluI AGCT 8 cut(s) 75, 346, 464, 496, 643, 746, 758, 845
Alw21I GWGCWC 3 cut(s) 77, 410, 871
Alw26I GTCTC 4 cut(s) 25, 231, 562, 985
AlwI GGATC 3 cut(s) 359, 512, 623
AlwNI CAGNNNCTG 1 cut(s) 758
AoxI GGCC 2 cut(s) 36, 240
ApeKI GCWGC 4 cut(s) 32, 195, 464, 763
ApoI RAATTY 1 cut(s) 1004
ArsI GACNNNNNNTTYG 4 cut(s) 40, 72, 99, 131
AsiGI ACCGGT 1 cut(s) 253
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 3 cut(s) 86, 688, 1099
AsuC2I CCSGG 2 cut(s) 124, 223
AsuHPI GGTGA 2 cut(s) 961, 997
AvaII GGWCC 3 cut(s) 86, 688, 1099
AxyI CCTNAGG 1 cut(s) 1034
BanII GRGCYC 1 cut(s) 77
BauI CACGAG 1 cut(s) 917
Bbv12I GWGCWC 3 cut(s) 77, 410, 871
BbvI GCAGC 4 cut(s) 44, 207, 451, 750
BccI CCATC 3 cut(s) 710, 770, 1085
BceAI ACGGC 3 cut(s) 47, 160, 202
BciT130I CCWGG 3 cut(s) 97, 738, 1103
BcnI CCSGG 2 cut(s) 124, 223
BcoDI GTCTC 4 cut(s) 25, 231, 562, 985
BfmI CTRYAG 1 cut(s) 465
BfuAI ACCTGC 2 cut(s) 7, 919
BisI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 764
BlpI GCTNAGC 1 cut(s) 342
BlsI GCNGC 6 cut(s) 34, 37, 197, 200, 466, 765
Bme1390I CCNGG 5 cut(s) 97, 124, 223, 738, 1103
Bme18I GGWCC 3 cut(s) 86, 688, 1099
BmgT120I GGNCC 3 cut(s) 86, 688, 1099
BmiI GGNNCC 1 cut(s) 264
BmrFI CCNGG 5 cut(s) 97, 124, 223, 738, 1103
BmsI GCATC 3 cut(s) 434, 731, 1048
Bpu1102I GCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 1047
BpuMI CCSGG 2 cut(s) 124, 223
BsaAI YACGTR 1 cut(s) 800
BsaHI GRCGYC 2 cut(s) 215, 571
BsaI GGTCTC 2 cut(s) 25, 231
BsaJI CCNNGG 4 cut(s) 430, 691, 736, 901
BsaWI WCCGGW 2 cut(s) 253, 265
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 228
Bse118I RCCGGY 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 1034
BseBI CCWGG 3 cut(s) 97, 738, 1103
BseDI CCNNGG 4 cut(s) 430, 691, 736, 901
BseGI GGATG 3 cut(s) 425, 542, 559
BseLI CCNNNNNNNGG 1 cut(s) 228
BseMII CTCAG 2 cut(s) 356, 1041
BseRI GAGGAG 2 cut(s) 13, 1121
BseXI GCAGC 4 cut(s) 44, 207, 451, 750
BseYI CCCAGC 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 771
BshFI GGCC 2 cut(s) 38, 242
BshTI ACCGGT 1 cut(s) 253
BsiHKAI GWGCWC 3 cut(s) 77, 410, 871
BsiSI CCGG 4 cut(s) 123, 223, 254, 266
BslFI GGGAC 2 cut(s) 205, 404
BslI CCNNNNNNNGG 1 cut(s) 228
BsmAI GTCTC 4 cut(s) 25, 231, 562, 985
BsmBI CGTCTC 1 cut(s) 562
BsmFI GGGAC 2 cut(s) 205, 404
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 2 cut(s) 38, 242
Bso31I GGTCTC 2 cut(s) 25, 231
Bsp1286I GDGCHC 3 cut(s) 77, 410, 871
Bsp143I GATC 6 cut(s) 135, 364, 481, 517, 628, 786
Bsp1720I GCTNAGC 1 cut(s) 342
BspACI CCGC 8 cut(s) 35, 84, 152, 198, 201, 232, 537, 1113
BspANI GGCC 2 cut(s) 38, 242
BspCNI CTCAG 2 cut(s) 355, 1042
BspLI GGNNCC 1 cut(s) 264
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 2 cut(s) 7, 919
BspPI GGATC 3 cut(s) 359, 512, 623
BspTNI GGTCTC 2 cut(s) 25, 231
BsrFI RCCGGY 1 cut(s) 253
BssAI RCCGGY 1 cut(s) 253
BssECI CCNNGG 4 cut(s) 430, 691, 736, 901
BssMI GATC 6 cut(s) 135, 364, 481, 517, 628, 786
BssNI GRCGYC 2 cut(s) 215, 571
BssSI CACGAG 1 cut(s) 917
BssT1I CCWWGG 1 cut(s) 901
Bst2BI CACGAG 1 cut(s) 917
Bst2UI CCWGG 3 cut(s) 97, 738, 1103
Bst4CI ACNGT 2 cut(s) 692, 898
Bst6I CTCTTC 2 cut(s) 975, 983
BstACI GRCGYC 2 cut(s) 215, 571
BstBAI YACGTR 1 cut(s) 800
BstC8I GCNNGC 3 cut(s) 494, 645, 768
BstDEI CTNAG 5 cut(s) 342, 402, 437, 1034, 1050
BstDSI CCRYGG 2 cut(s) 430, 691
BstF5I GGATG 3 cut(s) 425, 542, 559
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 6 cut(s) 138, 367, 484, 520, 631, 789
BstMAI GTCTC 4 cut(s) 25, 231, 562, 985
BstMBI GATC 6 cut(s) 135, 364, 481, 517, 628, 786
BstMWI GCNNNNNNNGC 2 cut(s) 81, 1073
BstNI CCWGG 3 cut(s) 97, 738, 1103
BstSCI CCNGG 5 cut(s) 95, 122, 221, 736, 1101
BstSFI CTRYAG 1 cut(s) 465
BstV1I GCAGC 4 cut(s) 44, 207, 451, 750
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
Bsu36I CCTNAGG 1 cut(s) 1034
BsuRI GGCC 2 cut(s) 38, 242
BtgI CCRYGG 2 cut(s) 430, 691
BtsCI GGATG 3 cut(s) 425, 542, 559
BtsIMutI CAGTG 1 cut(s) 334
BveI ACCTGC 2 cut(s) 7, 919
Cac8I GCNNGC 3 cut(s) 494, 645, 768
CaiI CAGNNNCTG 1 cut(s) 758
CfoI GCGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 253
Cfr13I GGNCC 3 cut(s) 86, 688, 1099
CseI GACGC 1 cut(s) 223
Csp6I GTAC 3 cut(s) 178, 290, 838
CspAI ACCGGT 1 cut(s) 253
CviAII CATG 1 cut(s) 1028
CviQI GTAC 3 cut(s) 178, 290, 838
DdeI CTNAG 5 cut(s) 342, 402, 437, 1034, 1050
DpnI GATC 6 cut(s) 137, 366, 483, 519, 630, 788
DpnII GATC 6 cut(s) 135, 364, 481, 517, 628, 786
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 975, 983
EarI CTCTTC 2 cut(s) 975, 983
EciI GGCGGA 3 cut(s) 216, 247, 552
Ecl136II GAGCTC 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 77
Eco31I GGTCTC 2 cut(s) 25, 231
Eco47I GGWCC 3 cut(s) 86, 688, 1099
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 1016
Eco81I CCTNAGG 1 cut(s) 1034
EcoICRI GAGCTC 1 cut(s) 75
EcoRII CCWGG 3 cut(s) 95, 736, 1101
EcoT14I CCWWGG 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 77
ErhI CCWWGG 1 cut(s) 901
Esp3I CGTCTC 1 cut(s) 562
FaeI CATG 1 cut(s) 1031
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FaqI GGGAC 2 cut(s) 205, 404
FatI CATG 1 cut(s) 1027
FauI CCCGC 1 cut(s) 1106
Fnu4HI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 764
FokI GGATG 3 cut(s) 412, 529, 566
FriOI GRGCYC 1 cut(s) 77
Fsp4HI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 764
GlaI GCGC 1 cut(s) 121
GluI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 764
GsaI CCCAGC 1 cut(s) 350
HaeIII GGCC 2 cut(s) 38, 242
HapII CCGG 4 cut(s) 123, 223, 254, 266
HgaI GACGC 1 cut(s) 223
HhaI GCGC 1 cut(s) 122
Hin1I GRCGYC 2 cut(s) 215, 571
Hin1II CATG 1 cut(s) 1031
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HindIII AAGCTT 2 cut(s) 494, 641
HinfI GANTC 8 cut(s) 108, 146, 245, 279, 392, 557, 659, 908
HpaII CCGG 4 cut(s) 123, 223, 254, 266
HphI GGTGA 2 cut(s) 961, 997
Hpy166II GTNNAC 2 cut(s) 382, 434
Hpy188I TCNGA 7 cut(s) 47, 68, 250, 532, 625, 970, 1051
Hpy188III TCNNGA 2 cut(s) 582, 636
Hpy8I GTNNAC 2 cut(s) 382, 434
Hpy99I CGWCG 4 cut(s) 68, 187, 217, 311
HpyAV CCTTC 7 cut(s) 99, 232, 527, 797, 940, 991, 1024
HpyCH4III ACNGT 2 cut(s) 692, 898
HpyCH4IV ACGT 3 cut(s) 571, 782, 799
HpyCH4V TGCA 5 cut(s) 425, 467, 722, 752, 928
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 1073
HpyF3I CTNAG 5 cut(s) 342, 402, 437, 1034, 1050
HpySE526I ACGT 3 cut(s) 571, 782, 799
Hsp92I GRCGYC 2 cut(s) 215, 571
Hsp92II CATG 1 cut(s) 1031
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 6 cut(s) 135, 364, 481, 517, 628, 786
LmnI GCTCC 1 cut(s) 755
Lsp1109I GCAGC 4 cut(s) 44, 207, 451, 750
LweI GCATC 3 cut(s) 434, 731, 1048
MaeII ACGT 3 cut(s) 571, 782, 799
MaeIII GTNAC 2 cut(s) 154, 817
MalI GATC 6 cut(s) 137, 366, 483, 519, 630, 788
MboI GATC 6 cut(s) 135, 364, 481, 517, 628, 786
MboII GAAGA 8 cut(s) 84, 112, 345, 519, 611, 698, 992, 1000
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 3 cut(s) 77, 410, 871
MluCI AATT 2 cut(s) 674, 1004
MlyI GAGTC 4 cut(s) 102, 386, 668, 902
MmeI TCCRAC 2 cut(s) 46, 545
MnlI CCTC 7 cut(s) 34, 228, 268, 378, 976, 1045, 1099
MseI TTAA 3 cut(s) 129, 860, 873
MslI CAYNNNNRTG 1 cut(s) 714
MspA1I CMGCKG 4 cut(s) 35, 152, 198, 346
MspI CCGG 4 cut(s) 123, 223, 254, 266
MspR9I CCNGG 5 cut(s) 97, 124, 223, 738, 1103
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 3 cut(s) 97, 738, 1103
MwoI GCNNNNNNNGC 2 cut(s) 81, 1073
NciI CCSGG 2 cut(s) 124, 223
NdeII GATC 6 cut(s) 135, 364, 481, 517, 628, 786
NlaIII CATG 1 cut(s) 1031
NlaIV GGNNCC 1 cut(s) 264
NmeAIII GCCGAG 2 cut(s) 208, 859
NmuCI GTSAC 1 cut(s) 817
PctI GAATGC 1 cut(s) 448
PfeI GAWTC 4 cut(s) 146, 245, 279, 557
PflFI GACNNNGTC 1 cut(s) 217
PfoI TCCNGGA 2 cut(s) 95, 1101
PinAI ACCGGT 1 cut(s) 253
PkrI GCNGC 6 cut(s) 34, 37, 197, 200, 466, 765
PleI GAGTC 4 cut(s) 102, 386, 667, 902
PpsI GAGTC 4 cut(s) 102, 386, 667, 902
Ppu21I YACGTR 1 cut(s) 800
Psp124BI GAGCTC 1 cut(s) 77
Psp1406I AACGTT 1 cut(s) 782
Psp6I CCWGG 3 cut(s) 95, 736, 1101
PspFI CCCAGC 1 cut(s) 346
PspGI CCWGG 3 cut(s) 95, 736, 1101
PspN4I GGNNCC 1 cut(s) 264
PspPI GGNCC 3 cut(s) 86, 688, 1099
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 758
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 346
RsaI GTAC 3 cut(s) 179, 291, 839
RsaNI GTAC 3 cut(s) 178, 290, 838
RseI CAYNNNNRTG 1 cut(s) 714
SacI GAGCTC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 129, 860, 873
SatI GCNGC 6 cut(s) 33, 36, 196, 199, 465, 764
Sau3AI GATC 6 cut(s) 135, 364, 481, 517, 628, 786
Sau96I GGNCC 3 cut(s) 86, 688, 1099
SchI GAGTC 4 cut(s) 102, 386, 668, 902
ScrFI CCNGG 5 cut(s) 97, 124, 223, 738, 1103
SduI GDGCHC 3 cut(s) 77, 410, 871
SfaNI GCATC 3 cut(s) 434, 731, 1048
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 3 cut(s) 86, 688, 1099
SmiMI CAYNNNNRTG 1 cut(s) 714
SmlI CTYRAG 1 cut(s) 1062
SmoI CTYRAG 1 cut(s) 1062
Sse9I AATT 2 cut(s) 674, 1004
SsiI CCGC 8 cut(s) 35, 84, 152, 198, 201, 232, 537, 1113
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 5 cut(s) 95, 122, 221, 736, 1101
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 2 cut(s) 692, 898
TaiI ACGT 3 cut(s) 574, 785, 802
TaqI TCGA 4 cut(s) 111, 190, 356, 560
TasI AATT 2 cut(s) 674, 1004
TauI GCSGC 2 cut(s) 38, 201
TfiI GAWTC 4 cut(s) 146, 245, 279, 557
Tru1I TTAA 3 cut(s) 129, 860, 873
Tru9I TTAA 3 cut(s) 129, 860, 873
TscAI CASTG 1 cut(s) 334
TseFI GTSAC 1 cut(s) 817
TseI GCWGC 4 cut(s) 32, 195, 464, 763
Tsp45I GTSAC 1 cut(s) 817
TspDTI ATGAA 3 cut(s) 17, 570, 698
TspGWI ACGGA 3 cut(s) 307, 535, 621
TspRI CASTG 1 cut(s) 334
Tth111I GACNNNGTC 1 cut(s) 217
VpaK11BI GGWCC 3 cut(s) 86, 688, 1099
XapI RAATTY 1 cut(s) 1004
ZraI GACGTC 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.