Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Reverse (-)

65946844 .. 65950266

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGAACTGCTTGTCGCAGGTCTCATCGTACACGGCGGCGATTTTCCGAACAGCAGGTCGTTCATTCGGGACCGGTGCTCTGTACGGACCCTGCAAGCGAAAATTGGACGTCTACGCTGGGGTGAAGCTGATCAGCTTCGAATCGGCGGTTTCGAGGTTCCGGACTCAGCTCTACTCGTCGCAGAGCAAAGCGACGTCGTCTCGGCCGCGGAAGAAGAAGTCAGGACCCAAACGAGTTATGGACCCGGAAAAGGACGCATTCTATGTAGTCCGCAAAGGAAACGTAGTCGGTGTCTATAAGAGCTTCGCTGATTGCCAAGCTGAGCAAGCTTCTTCAATATGTGATCCTCCAATGAGTGTGTACAAAGGGTACTCTATGCCTAAGAAGGATGAGCAATATCTTGCTTCCTGTGGACTTCAGAATGCGCTTTACACTATTTCAGCTGCAGATATGAAAGATGAGCTTTTTGGCAAGCTTGTGGACTGTCCTCTTGGAGATCCAGCATCTTCAAAAGGCGAAACGTCTGAGAAGACTGCAGCCAAGAAGAGATCCCACCAAGAGGCTGAAACAGAAAATGTGGAAGTAATTGGTTCAACTTCTGTATCAGATACTCCTTCCAGAAAGCAGGCCAAGAAAAAGGCTGAAGTTGAAGTCCCCCTTCTGGCCGTGTTACTGGCACAGGTTCAGGGTTTATGGCAGGTGAAAAATCAGAACTTGTCTACTTTGTATGAAGAGGTGAAGAAACTGAAGGATGGATTTGTCTCCTTCAAGATCAGTCATGTTCTTAGGTTTACTGCCATTGGGGCTGCTTATAACATTCTGACATGTTCTTGTATTCCTGTAAAGGAGCTAAATTCTGAGGCAGATGCTCAAGCAAACTTAGCGATCACTCTTGCCAATGGTCAAGTCCAGGAAGAGTCTGGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

309

Amino Acids

33.63

Weight (kDa)

9.15

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AarI	CACCTGC	1 cut(s)	688
AatII	GACGTC	2 cut(s)	111, 197
Acc36I	ACCTGC	3 cut(s)	7, 44, 688
AccI	GTMKAC	2 cut(s)	111, 719
AccII	CGCG	1 cut(s)	208
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	5 cut(s)	35, 146, 206, 208, 271
AclWI	GGATC	3 cut(s)	338, 491, 543
AcoI	YGGCCR	2 cut(s)	203, 663
AcsI	RAATTY	1 cut(s)	853
AcuI	CTGAAG	3 cut(s)	401, 663, 767
AcyI	GRCGYC	2 cut(s)	108, 194
AfaI	GTAC	4 cut(s)	29, 83, 362, 371
AfiI	CCNNNNNNNGG	3 cut(s)	250, 559, 661
AflIII	ACRYGT	1 cut(s)	824
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	336, 510, 594, 650, 769
AjnI	CCWGG	1 cut(s)	909
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	25, 204, 766
AlwI	GGATC	3 cut(s)	338, 491, 543
Aor13HI	TCCGGA	1 cut(s)	159
AoxI	GGCC	3 cut(s)	203, 627, 663
ApeKI	GCWGC	3 cut(s)	443, 536, 806
ApoI	RAATTY	1 cut(s)	853
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AsiGI	ACCGGT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	69, 86, 224, 241
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	133, 712, 748
AsuII	TTCGAA	1 cut(s)	138
AvaII	GGWCC	4 cut(s)	69, 86, 224, 241
BaeI	ACNNNNGTAYC	2 cut(s)	585, 618
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	3 cut(s)	430, 548, 793
BccI	CCATC	1 cut(s)	746
BceAI	ACGGC	2 cut(s)	48, 650
BciT130I	CCWGG	1 cut(s)	911
BclI	TGATCA	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	25, 204, 766
BfmI	CTRYAG	2 cut(s)	444, 534
BfuAI	ACCTGC	3 cut(s)	7, 44, 688
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	5 cut(s)	36, 206, 444, 537, 807
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	37, 207, 445, 538, 808
Bme1390I	CCNGG	2 cut(s)	245, 911
Bme18I	GGWCC	4 cut(s)	69, 86, 224, 241
BmgT120I	GGNCC	4 cut(s)	69, 86, 224, 241
BmiI	GGNNCC	5 cut(s)	70, 88, 158, 226, 243
BmrFI	CCNGG	2 cut(s)	245, 911
BmsI	GCATC	2 cut(s)	512, 856
BpiI	GAAGAC	1 cut(s)	536
Bpu1102I	GCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	855
BpuMI	CCSGG	1 cut(s)	245
BsaHI	GRCGYC	2 cut(s)	108, 194
BsaI	GGTCTC	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	2 cut(s)	71, 159
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 559, 661
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	678
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	911
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	394, 757
BseLI	CCNNNNNNNGG	3 cut(s)	250, 559, 661
BseMII	CTCAG	4 cut(s)	179, 312, 516, 849
BseNI	ACTGG	1 cut(s)	678
BseX3I	CGGCCG	1 cut(s)	203
BseXI	GCAGC	3 cut(s)	430, 548, 793
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	208
Bsh1285I	CGRYCG	1 cut(s)	206
BshFI	GGCC	3 cut(s)	205, 629, 665
BshTI	ACCGGT	1 cut(s)	71
BsiEI	CGRYCG	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	3 cut(s)	72, 160, 245
BslFI	GGGAC	2 cut(s)	82, 638
BslI	CCNNNNNNNGG	3 cut(s)	250, 559, 661
BsmAI	GTCTC	3 cut(s)	25, 204, 766
BsmBI	CGTCTC	1 cut(s)	204
BsmFI	GGGAC	2 cut(s)	82, 638
BsmI	GAATGC	2 cut(s)	257, 427
BsnI	GGCC	3 cut(s)	205, 629, 665
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	360
Bsp143I	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
Bsp1720I	GCTNAGC	1 cut(s)	321
BspACI	CCGC	5 cut(s)	35, 146, 206, 208, 271
BspANI	GGCC	3 cut(s)	205, 629, 665
BspCNI	CTCAG	4 cut(s)	178, 313, 517, 850
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	208
BspLI	GGNNCC	5 cut(s)	70, 88, 158, 226, 243
BspMAI	CTGCAG	2 cut(s)	448, 538
BspMI	ACCTGC	3 cut(s)	7, 44, 688
BspPI	GGATC	3 cut(s)	338, 491, 543
BspT104I	TTCGAA	1 cut(s)	138
BspTNI	GGTCTC	1 cut(s)	25
BsrFI	RCCGGY	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	678
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
BssNI	GRCGYC	2 cut(s)	108, 194
Bst2UI	CCWGG	1 cut(s)	911
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	3 cut(s)	539, 726, 909
BstACI	GRCGYC	2 cut(s)	108, 194
BstAUI	TGTACA	1 cut(s)	360
BstBI	TTCGAA	1 cut(s)	138
BstC8I	GCNNGC	4 cut(s)	95, 327, 473, 627
BstDEI	CTNAG	7 cut(s)	165, 321, 381, 525, 785, 858, 880
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	2 cut(s)	394, 757
BstFNI	CGCG	1 cut(s)	208
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	6 cut(s)	132, 346, 499, 551, 774, 888
BstMAI	GTCTC	3 cut(s)	25, 204, 766
BstMBI	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
BstMCI	CGRYCG	1 cut(s)	206
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 803, 881
BstNI	CCWGG	1 cut(s)	911
BstNSI	RCATGY	1 cut(s)	828
BstSCI	CCNGG	2 cut(s)	243, 909
BstSFI	CTRYAG	2 cut(s)	444, 534
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	3 cut(s)	430, 548, 793
BstV2I	GAAGAC	1 cut(s)	536
BstX2I	RGATCY	2 cut(s)	496, 548
BstYI	RGATCY	2 cut(s)	496, 548
BstZI	CGGCCG	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	205, 629, 665
BtgI	CCRYGG	1 cut(s)	206
BtsCI	GGATG	2 cut(s)	394, 757
BveI	ACCTGC	3 cut(s)	7, 44, 688
Cac8I	GCNNGC	4 cut(s)	95, 327, 473, 627
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	4 cut(s)	69, 86, 224, 241
Cfr42I	CCGCGG	1 cut(s)	209
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	4 cut(s)	28, 82, 361, 370
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	2 cut(s)	779, 825
CviQI	GTAC	4 cut(s)	28, 82, 361, 370
DdeI	CTNAG	7 cut(s)	165, 321, 381, 525, 785, 858, 880
DpnI	GATC	6 cut(s)	131, 345, 498, 550, 773, 887
DpnII	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
EaeI	YGGCCR	2 cut(s)	203, 663
EagI	CGGCCG	1 cut(s)	203
Eam1104I	CTCTTC	3 cut(s)	539, 726, 909
EarI	CTCTTC	3 cut(s)	539, 726, 909
EclXI	CGGCCG	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	4 cut(s)	69, 86, 224, 241
Eco52I	CGGCCG	1 cut(s)	203
Eco57I	CTGAAG	3 cut(s)	401, 663, 767
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	909
Esp3I	CGTCTC	1 cut(s)	204
FaeI	CATG	2 cut(s)	782, 828
FalI	AAGNNNNNCTT	4 cut(s)	447, 479, 642, 674
FaqI	GGGAC	2 cut(s)	82, 638
FatI	CATG	2 cut(s)	778, 824
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	2 cut(s)	111, 719
Fnu4HI	GCNGC	5 cut(s)	36, 206, 444, 537, 807
FokI	GGATG	2 cut(s)	401, 764
Fsp4HI	GCNGC	5 cut(s)	36, 206, 444, 537, 807
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	5 cut(s)	36, 206, 444, 537, 807
GsaI	CCCAGC	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	205, 629, 665
HapII	CCGG	3 cut(s)	72, 160, 245
HgaI	GACGC	1 cut(s)	263
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	2 cut(s)	108, 194
Hin1II	CATG	2 cut(s)	782, 828
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HindIII	AAGCTT	2 cut(s)	327, 473
HinfI	GANTC	3 cut(s)	140, 163, 917
HpaII	CCGG	3 cut(s)	72, 160, 245
HphI	GGTGA	3 cut(s)	133, 712, 748
Hpy166II	GTNNAC	7 cut(s)	30, 112, 361, 413, 481, 720, 792
Hpy188I	TCNGA	7 cut(s)	47, 420, 526, 607, 711, 822, 859
Hpy188III	TCNNGA	5 cut(s)	67, 160, 222, 618, 769
Hpy8I	GTNNAC	7 cut(s)	30, 112, 361, 413, 481, 720, 792
Hpy99I	CGWCG	3 cut(s)	181, 196, 199
HpyAV	CCTTC	5 cut(s)	379, 624, 668, 742, 775
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4IV	ACGT	4 cut(s)	108, 194, 282, 521
HpyCH4V	TGCA	3 cut(s)	93, 446, 536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 803, 881
HpyF3I	CTNAG	7 cut(s)	165, 321, 381, 525, 785, 858, 880
HpySE526I	ACGT	4 cut(s)	108, 194, 282, 521
Hsp92I	GRCGYC	2 cut(s)	108, 194
Hsp92II	CATG	2 cut(s)	782, 828
HspAI	GCGC	1 cut(s)	425
Kpn2I	TCCGGA	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	129
KspI	CCGCGG	1 cut(s)	209
Kzo9I	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
LmnI	GCTCC	1 cut(s)	847
Lsp1109I	GCAGC	3 cut(s)	430, 548, 793
LweI	GCATC	2 cut(s)	512, 856
MaeII	ACGT	4 cut(s)	108, 194, 282, 521
MaeIII	GTNAC	1 cut(s)	669
MalI	GATC	6 cut(s)	131, 345, 498, 550, 773, 887
MboI	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
MboII	GAAGA	9 cut(s)	223, 226, 324, 498, 541, 556, 743, 751, 926
MflI	RGATCY	2 cut(s)	496, 548
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	3 cut(s)	101, 585, 853
MlyI	GAGTC	2 cut(s)	157, 926
MnlI	CCTC	6 cut(s)	147, 357, 498, 553, 727, 853
MroI	TCCGGA	1 cut(s)	159
MspA1I	CMGCKG	2 cut(s)	208, 443
MspI	CCGG	3 cut(s)	72, 160, 245
MspR9I	CCNGG	2 cut(s)	245, 911
Mva1269I	GAATGC	2 cut(s)	257, 427
MvaI	CCWGG	1 cut(s)	911
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	3 cut(s)	326, 803, 881
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
NlaIII	CATG	2 cut(s)	782, 828
NlaIV	GGNNCC	5 cut(s)	70, 88, 158, 226, 243
NmeAIII	GCCGAG	1 cut(s)	181
NspI	RCATGY	1 cut(s)	828
NspV	TTCGAA	1 cut(s)	138
PaqCI	CACCTGC	1 cut(s)	688
PciI	ACATGT	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PctI	GAATGC	2 cut(s)	257, 427
PfeI	GAWTC	1 cut(s)	140
PflFI	GACNNNGTC	1 cut(s)	196
PfoI	TCCNGGA	1 cut(s)	909
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	5 cut(s)	37, 207, 445, 538, 808
PleI	GAGTC	2 cut(s)	157, 925
PpsI	GAGTC	2 cut(s)	157, 925
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	1 cut(s)	824
PsiI	TTATAA	1 cut(s)	813
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	909
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	909
PspN4I	GGNNCC	5 cut(s)	70, 88, 158, 226, 243
PspPI	GGNCC	4 cut(s)	69, 86, 224, 241
PspPPI	RGGWCCY	1 cut(s)	224
PstI	CTGCAG	2 cut(s)	448, 538
PsuI	RGATCY	2 cut(s)	496, 548
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	4 cut(s)	29, 83, 362, 371
RsaNI	GTAC	4 cut(s)	28, 82, 361, 370
SacII	CCGCGG	1 cut(s)	209
SatI	GCNGC	5 cut(s)	36, 206, 444, 537, 807
Sau3AI	GATC	6 cut(s)	129, 343, 496, 548, 771, 885
Sau96I	GGNCC	4 cut(s)	69, 86, 224, 241
SchI	GAGTC	2 cut(s)	157, 926
ScrFI	CCNGG	2 cut(s)	245, 911
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	2 cut(s)	512, 856
SfcI	CTRYAG	2 cut(s)	444, 534
Sfr303I	CCGCGG	1 cut(s)	209
SfuI	TTCGAA	1 cut(s)	138
SgrBI	CCGCGG	1 cut(s)	209
SinI	GGWCC	4 cut(s)	69, 86, 224, 241
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
Sse9I	AATT	3 cut(s)	101, 585, 853
SsiI	CCGC	5 cut(s)	35, 146, 206, 208, 271
StyD4I	CCNGG	2 cut(s)	243, 909
TaaI	ACNGT	1 cut(s)	485
TaiI	ACGT	4 cut(s)	111, 197, 285, 524
TaqI	TCGA	2 cut(s)	138, 152
TasI	AATT	3 cut(s)	101, 585, 853
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	2 cut(s)	38, 208
TfiI	GAWTC	1 cut(s)	140
TseI	GCWGC	3 cut(s)	443, 536, 806
TspDTI	ATGAA	4 cut(s)	17, 51, 467, 744
TspGWI	ACGGA	1 cut(s)	99
Tth111I	GACNNNGTC	1 cut(s)	196
VpaK11BI	GGWCC	4 cut(s)	69, 86, 224, 241
XapI	RAATTY	1 cut(s)	853
XceI	RCATGY	1 cut(s)	828
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 917
XmiI	GTMKAC	2 cut(s)	111, 719
ZraI	GACGTC	2 cut(s)	109, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.