Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Reverse (-)

2188907 .. 2191300

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAACTTCTCGTCACACGTTTCGTACACGACGGGTCGTTTTTTCTCCACCAGCTCTTCTCCTTTTTCTTCCTGGAGAACAAAACCGAACCTTTCAGCTGGAATTAAGTCAATTCCCGTTGGATTAGCGTTGACCAGAGTCCATGCTCAGCTTCGAAGTAATGGCGGCAGCGGCAAAACGACGTCGTGTTGTGCTCGGACGAACGCAATGGGAGCGGAAAAAGAAGCGTTCTATTTAGTCCGGAAAGGAGATATTGTTGGCGTGTATAAGAATTTCAGTGACTGTGAGGCGCAGATTGGTTCTTCGATATGTGATCCTCCTGTTAGTGTGTACAAAGGTTACTGCTTGCCCAAGGACACTGAAGAACATCTTGTATCTTTTGGACTTGCCAATGCCATTTACACAATCAGAGCTGAAGATTTGAAGCAGGACCATTTCGGCAAGCTCATGCTTTGCCCTTTTCATGAGCCAGCACCTTTAGAATGTGAAGAATCTGTCACGGATACATCTGTAAACGGTGAAGTGCCTGGATCAGAAAACGTGGGCTTCTGTACTCTCGAGTTCGATGGTGCATCAAAAGGAAATCCTGGACTAGCTGGTGCTGGAGCTGTGCTGCGGGCTGATGATGGAAGTTTGATCTGTAAAGTTCACGAAGGTCTGGGTATTAAGACCAATAATGTTGCTGAGTACCGAGCTCTGATTTTAGGGTTAAAATGTGCTCTCAAGAAAGGTTTTACCAAGATTCGAGTCCAGGGTGATTCCAAACTTGTTTGTATGCAGGTTCAAGGTTTATGGAAGGTCAAAAACCAGAATCTGTCTGATTTGTGTGAAGAGGTGAAGGAACTGAAAGAAAAATTTGTCACCTTTGAGATCAGTCATGTTCTGAGGGACAAAAATTCAGAGGCAGATGCTCAAGCAAACTTGGCAGTTCGTCTTAGTGATGGTGAAGTCCACGAAGTGGCACGGGGATTAGACCCCGATCAATACACGAGCTTTGCGCTTCCAGCCGAGTGTGACAACAAGCAGTGCAAACAACTTGGAGGATTTCAGCTCATGGGCATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

356

Amino Acids

38.45

Weight (kDa)

6.27

Isoelectric Point (pI)

27.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	188 - 308	6.3e-28	Reverse transcriptase-like
RNase_H	PF00075	188 - 291	4.2e-09	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	185
Acc36I	ACCTGC	1 cut(s)	769
AccB7I	CCANNNNNTGG	1 cut(s)	958
AccBSI	CCGCTC	1 cut(s)	215
AccIII	TCCGGA	1 cut(s)	240
AciI	CCGC	4 cut(s)	165, 171, 215, 616
AclWI	GGATC	2 cut(s)	308, 538
AcsI	RAATTY	3 cut(s)	271, 854, 895
AcuI	CTGAAG	2 cut(s)	381, 435
AcyI	GRCGYC	1 cut(s)	182
AdeI	CACNNNGTG	1 cut(s)	958
AfaI	GTAC	4 cut(s)	26, 332, 553, 689
AfiI	CCNNNNNNNGG	1 cut(s)	958
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	2 cut(s)	424, 785
AjnI	CCWGG	4 cut(s)	71, 526, 586, 750
Alw21I	GWGCWC	3 cut(s)	196, 697, 721
AlwI	GGATC	2 cut(s)	308, 538
AlwNI	CAGNNNCTG	2 cut(s)	282, 814
Ama87I	CYCGRG	1 cut(s)	557
Aor13HI	TCCGGA	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	168, 613
ApoI	RAATTY	3 cut(s)	271, 854, 895
AspLEI	GCGC	2 cut(s)	292, 1000
AspS9I	GGNCC	1 cut(s)	430
AsuHPI	GGTGA	5 cut(s)	530, 767, 847, 853, 956
AsuII	TTCGAA	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	430
BaeI	ACNNNNGTAYC	2 cut(s)	495, 528
BanII	GRGCYC	1 cut(s)	697
BauI	CACGAG	1 cut(s)	988
Bbv12I	GWGCWC	3 cut(s)	196, 697, 721
BbvI	GCAGC	2 cut(s)	180, 600
BccI	CCATC	3 cut(s)	560, 620, 935
BciT130I	CCWGG	4 cut(s)	73, 528, 588, 752
BciVI	GTATCC	1 cut(s)	496
BfaI	CTAG	1 cut(s)	593
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	496
BisI	GCNGC	4 cut(s)	166, 169, 172, 614
BlpI	GCTNAGC	1 cut(s)	147
BlsI	GCNGC	4 cut(s)	167, 170, 173, 615
Bme1390I	CCNGG	4 cut(s)	73, 528, 588, 752
Bme18I	GGWCC	1 cut(s)	430
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	1 cut(s)	430
BmrFI	CCNGG	4 cut(s)	73, 528, 588, 752
BmsI	GCATC	2 cut(s)	581, 898
BoxI	GACNNNNGTC	1 cut(s)	137
BpmI	CTGGAG	2 cut(s)	94, 624
Bpu1102I	GCTNAGC	1 cut(s)	147
Bpu14I	TTCGAA	1 cut(s)	154
BpuEI	CTTGAG	2 cut(s)	707, 897
BsaHI	GRCGYC	1 cut(s)	182
BsaJI	CCNNGG	2 cut(s)	351, 751
BsaWI	WCCGGW	1 cut(s)	240
BsaXI	ACNNNNNCTCC	2 cut(s)	240, 270
Bsc4I	CCNNNNNNNGG	1 cut(s)	958
Bse3DI	GCAATG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	240
BseBI	CCWGG	4 cut(s)	73, 528, 588, 752
BseDI	CCNNGG	2 cut(s)	351, 751
BseLI	CCNNNNNNNGG	1 cut(s)	958
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	3 cut(s)	161, 675, 875
BseXI	GCAGC	2 cut(s)	180, 600
BsiHKAI	GWGCWC	3 cut(s)	196, 697, 721
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	1 cut(s)	241
BslFI	GGGAC	1 cut(s)	902
BslI	CCNNNNNNNGG	1 cut(s)	958
BsmFI	GGGAC	1 cut(s)	902
BsoBI	CYCGRG	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	154
Bsp1286I	GDGCHC	3 cut(s)	196, 697, 721
Bsp13I	TCCGGA	1 cut(s)	240
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	5 cut(s)	313, 530, 636, 870, 979
Bsp1720I	GCTNAGC	1 cut(s)	147
BspACI	CCGC	4 cut(s)	165, 171, 215, 616
BspCNI	CTCAG	3 cut(s)	160, 676, 876
BspEI	TCCGGA	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	2 cut(s)	308, 538
BspQI	GCTCTTC	1 cut(s)	61
BspT104I	TTCGAA	1 cut(s)	154
BsrBI	CCGCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	330
BssECI	CCNNGG	2 cut(s)	351, 751
BssMI	GATC	5 cut(s)	313, 530, 636, 870, 979
BssNI	GRCGYC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	988
BssT1I	CCWWGG	1 cut(s)	351
Bst2BI	CACGAG	1 cut(s)	988
Bst2UI	CCWGG	4 cut(s)	73, 528, 588, 752
Bst4CI	ACNGT	2 cut(s)	284, 518
Bst6I	CTCTTC	2 cut(s)	61, 825
BstACI	GRCGYC	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	330
BstBI	TTCGAA	1 cut(s)	154
BstC8I	GCNNGC	4 cut(s)	347, 443, 471, 618
BstDEI	CTNAG	4 cut(s)	147, 684, 884, 935
BstHHI	GCGC	2 cut(s)	292, 1000
BstKTI	GATC	5 cut(s)	316, 533, 639, 873, 982
BstMBI	GATC	5 cut(s)	313, 530, 636, 870, 979
BstMWI	GCNNNNNNNGC	4 cut(s)	171, 212, 923, 1004
BstNI	CCWGG	4 cut(s)	73, 528, 588, 752
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	71, 526, 586, 750
BstV1I	GCAGC	2 cut(s)	180, 600
BsuI	GTATCC	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	1031
BtsIMutI	CAGTG	3 cut(s)	283, 357, 1031
BveI	ACCTGC	1 cut(s)	769
Cac8I	GCNNGC	4 cut(s)	347, 443, 471, 618
CaiI	CAGNNNCTG	2 cut(s)	282, 814
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	2 cut(s)	292, 1000
Cfr13I	GGNCC	1 cut(s)	430
Csp6I	GTAC	4 cut(s)	25, 331, 552, 688
CviAII	CATG	6 cut(s)	143, 448, 464, 878, 1054, 1060
CviQI	GTAC	4 cut(s)	25, 331, 552, 688
DdeI	CTNAG	4 cut(s)	147, 684, 884, 935
DpnI	GATC	5 cut(s)	315, 532, 638, 872, 981
DpnII	GATC	5 cut(s)	313, 530, 636, 870, 979
DraIII	CACNNNGTG	1 cut(s)	958
Eam1104I	CTCTTC	2 cut(s)	61, 825
EarI	CTCTTC	2 cut(s)	61, 825
Ecl136II	GAGCTC	1 cut(s)	695
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	697
Eco47I	GGWCC	1 cut(s)	430
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	2 cut(s)	381, 435
Eco88I	CYCGRG	1 cut(s)	557
EcoICRI	GAGCTC	1 cut(s)	695
EcoRII	CCWGG	4 cut(s)	71, 526, 586, 750
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	697
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	6 cut(s)	146, 451, 467, 881, 1057, 1063
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FaqI	GGGAC	1 cut(s)	902
FatI	CATG	6 cut(s)	142, 447, 463, 877, 1053, 1059
FauI	CCCGC	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	166, 169, 172, 614
FriOI	GRGCYC	1 cut(s)	697
Fsp4HI	GCNGC	4 cut(s)	166, 169, 172, 614
FspBI	CTAG	1 cut(s)	593
GlaI	GCGC	2 cut(s)	291, 999
GluI	GCNGC	4 cut(s)	166, 169, 172, 614
GsuI	CTGGAG	2 cut(s)	94, 624
HapII	CCGG	1 cut(s)	241
HhaI	GCGC	2 cut(s)	292, 1000
Hin1I	GRCGYC	1 cut(s)	182
Hin1II	CATG	6 cut(s)	146, 451, 467, 881, 1057, 1063
Hin6I	GCGC	2 cut(s)	290, 998
HinP1I	GCGC	2 cut(s)	290, 998
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HinfI	GANTC	6 cut(s)	138, 491, 742, 747, 758, 811
HpaII	CCGG	1 cut(s)	241
HphI	GGTGA	5 cut(s)	530, 767, 847, 853, 956
Hpy166II	GTNNAC	6 cut(s)	27, 132, 331, 514, 649, 952
Hpy188I	TCNGA	7 cut(s)	198, 410, 535, 699, 820, 885, 901
Hpy188III	TCNNGA	5 cut(s)	241, 464, 557, 650, 724
Hpy8I	GTNNAC	6 cut(s)	27, 132, 331, 514, 649, 952
Hpy99I	CGWCG	3 cut(s)	34, 184, 187
HpyAV	CCTTC	3 cut(s)	647, 790, 832
HpyCH4III	ACNGT	2 cut(s)	284, 518
HpyCH4IV	ACGT	3 cut(s)	18, 182, 540
HpyCH4V	TGCA	3 cut(s)	572, 778, 1029
HpyF10VI	GCNNNNNNNGC	4 cut(s)	171, 212, 923, 1004
HpyF3I	CTNAG	4 cut(s)	147, 684, 884, 935
HpySE526I	ACGT	3 cut(s)	18, 182, 540
Hsp92I	GRCGYC	1 cut(s)	182
Hsp92II	CATG	6 cut(s)	146, 451, 467, 881, 1057, 1063
HspAI	GCGC	2 cut(s)	290, 998
Kpn2I	TCCGGA	1 cut(s)	240
Kzo9I	GATC	5 cut(s)	313, 530, 636, 870, 979
LguI	GCTCTTC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	212, 605
Lsp1109I	GCAGC	2 cut(s)	180, 600
LweI	GCATC	2 cut(s)	581, 898
MaeI	CTAG	1 cut(s)	593
MaeII	ACGT	3 cut(s)	18, 182, 540
MaeIII	GTNAC	6 cut(s)	12, 278, 338, 496, 859, 1013
MalI	GATC	5 cut(s)	315, 532, 638, 872, 981
MbiI	CCGCTC	1 cut(s)	215
MboI	GATC	5 cut(s)	313, 530, 636, 870, 979
MboII	GAAGA	7 cut(s)	48, 60, 294, 374, 428, 500, 842
MhlI	GDGCHC	3 cut(s)	196, 697, 721
MluCI	AATT	5 cut(s)	102, 111, 271, 854, 895
MlyI	GAGTC	2 cut(s)	147, 756
MmeI	TCCRAC	1 cut(s)	100
MnlI	CCTC	6 cut(s)	280, 327, 826, 879, 895, 1034
MroI	TCCGGA	1 cut(s)	240
MseI	TTAA	4 cut(s)	105, 666, 710, 1066
MslI	CAYNNNNRTG	1 cut(s)	1058
MspA1I	CMGCKG	2 cut(s)	98, 171
MspI	CCGG	1 cut(s)	241
MspR9I	CCNGG	4 cut(s)	73, 528, 588, 752
MvaI	CCWGG	4 cut(s)	73, 528, 588, 752
MwoI	GCNNNNNNNGC	4 cut(s)	171, 212, 923, 1004
NdeII	GATC	5 cut(s)	313, 530, 636, 870, 979
NlaIII	CATG	6 cut(s)	146, 451, 467, 881, 1057, 1063
NmeAIII	GCCGAG	1 cut(s)	1033
NmuCI	GTSAC	5 cut(s)	12, 278, 496, 859, 1013
NspV	TTCGAA	1 cut(s)	154
PaeR7I	CTCGAG	1 cut(s)	557
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	61
PfeI	GAWTC	4 cut(s)	491, 742, 758, 811
PflMI	CCANNNNNTGG	1 cut(s)	958
PfoI	TCCNGGA	2 cut(s)	71, 586
PkrI	GCNGC	4 cut(s)	167, 170, 173, 615
PleI	GAGTC	2 cut(s)	146, 755
PpsI	GAGTC	2 cut(s)	146, 755
PshAI	GACNNNNGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	697
Psp6I	CCWGG	4 cut(s)	71, 526, 586, 750
PspGI	CCWGG	4 cut(s)	71, 526, 586, 750
PspPI	GGNCC	1 cut(s)	430
PstNI	CAGNNNCTG	2 cut(s)	282, 814
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	4 cut(s)	26, 332, 553, 689
RsaNI	GTAC	4 cut(s)	25, 331, 552, 688
RseI	CAYNNNNRTG	1 cut(s)	1058
SacI	GAGCTC	1 cut(s)	697
SapI	GCTCTTC	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	105, 666, 710, 1066
SatI	GCNGC	4 cut(s)	166, 169, 172, 614
Sau3AI	GATC	5 cut(s)	313, 530, 636, 870, 979
Sau96I	GGNCC	1 cut(s)	430
SchI	GAGTC	2 cut(s)	147, 756
ScrFI	CCNGG	4 cut(s)	73, 528, 588, 752
SduI	GDGCHC	3 cut(s)	196, 697, 721
SfaNI	GCATC	2 cut(s)	581, 898
Sfr274I	CTCGAG	1 cut(s)	557
SfuI	TTCGAA	1 cut(s)	154
SinI	GGWCC	1 cut(s)	430
SlaI	CTCGAG	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	1058
SmlI	CTYRAG	3 cut(s)	557, 722, 912
SmoI	CTYRAG	3 cut(s)	557, 722, 912
Sse9I	AATT	5 cut(s)	102, 111, 271, 854, 895
SsiI	CCGC	4 cut(s)	165, 171, 215, 616
SspMI	CTAG	1 cut(s)	593
SstI	GAGCTC	1 cut(s)	697
StyD4I	CCNGG	4 cut(s)	71, 526, 586, 750
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	284, 518
TaiI	ACGT	3 cut(s)	21, 185, 543
TaqI	TCGA	5 cut(s)	154, 305, 558, 564, 745
TasI	AATT	5 cut(s)	102, 111, 271, 854, 895
TatI	WGTACW	2 cut(s)	330, 551
TauI	GCSGC	2 cut(s)	168, 174
TfiI	GAWTC	4 cut(s)	491, 742, 758, 811
Tru1I	TTAA	4 cut(s)	105, 666, 710, 1066
Tru9I	TTAA	4 cut(s)	105, 666, 710, 1066
TscAI	CASTG	3 cut(s)	283, 364, 1031
TseFI	GTSAC	5 cut(s)	12, 278, 496, 859, 1013
TseI	GCWGC	2 cut(s)	168, 613
Tsp45I	GTSAC	5 cut(s)	12, 278, 496, 859, 1013
TspDTI	ATGAA	2 cut(s)	17, 452
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	3 cut(s)	283, 364, 1031
Van91I	CCANNNNNTGG	1 cut(s)	958
VpaK11BI	GGWCC	1 cut(s)	430
XapI	RAATTY	3 cut(s)	271, 854, 895
XhoI	CTCGAG	1 cut(s)	557
XspI	CTAG	1 cut(s)	593
ZraI	GACGTC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.