Prupe.1G373800_v2.0.a1

RNase H

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
33975948 .. 33979306
3359 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G373800.4

Sequence Viewer

Length: 1125 bp
ATGAACTGCTTGTCGCAGTTTTCCTCATACACAGCGGCCATTTTCAGAACGACAGGTCGGTCCGCCGGGACGAGTGCTCTGTGCGGACCTTCTTCGTGGAAGAGAAGATTTGACCTTTGTACTAATAGCAAGTTAATCAACTTAGAATCAGTGCTGACGAGGTTCCATATTCAGCTCTATTCGTCTCGAAGCAAAGGCAGCAGCAGCAGCAGCAAAACGACGTCGCCCCGGTCGCGGAAGAAGTCGAATTCCGAACCGGCTATGGAACCGGACAAAGACTCCTTCTATGTAGTGCGCAAAGGAGACGTTGTCGGTGTTTATAAGAGTTTCAGTGATTGCCAGGCTCAGCTCGGCTCTTCGATATGCGATCCTCCTGTTAGCGTGTACAAAGGGGAGTCTATGCCCAAGAACACTGAAGAATATCTTGTTTCTCGTGGACTTAAGAATGCCATTTACACTATAAGAGCTGAAGATGTGAAAGATGATCTTTTTGGCAAGCTTGTGCAGTGCCCGGTTGAAGACCCGTGTTCAAAGGGTGAAACATCTGTTAAGGATGCATCCAAAAAGAGACCCCAACAACTGTGTGGAACAGAAACTGAGGAAGAATTTGGTTCAACTTTCATATCAGACGATCTGTCGAGAAAGCATGCCAAGATAGATCATTCTGCTGTGCTCGAATCACCCCCCTTGAACCGTGGTTCCTGTATTCTTATGTTTGATGGTGCATCGAAAGGAAACCCTGGACTAGCTGGTGCCGGAGCTGTGTTGCGAGCAGATGATGGAAGCTTGATCTGTAAAGTACGTGAAGGTCTGGGTATCGCAACTAATAATGTTGCCGAGTACCGCGCTGTCATTTTAGGATTAAAATGTGCTCTTAGAAAAGGTTTTAGTAAGATTGTTGTTCAAGGTGACTCCAAACTCGTCTGTATGCAGGTTCAGGGATTATGGAAGGTGAAAAACCAGAACATGTCTGATTTGTATGAAGAGGTGAAGAAATTGAAGGATAAATTTCTCTCCTTCAAGATCAGTCATGTCCTCAGGGGACGAAACTCTGAGGCAGATGCTGAAGCAAACTTGGCAATCACTCTTGCTGATGGTCAAGTCCAGGAGGTGTCTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

375

Amino Acids

40.73

Weight (kDa)

9.01

Isoelectric Point (pI)

40.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AasI GACNNNNNNGTC 1 cut(s) 58
AatII GACGTC 1 cut(s) 224
Acc16I TGCGCA 1 cut(s) 296
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 752
AccII CGCG 2 cut(s) 235, 846
AciI CCGC 5 cut(s) 35, 63, 84, 235, 844
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 3 cut(s) 247, 605, 1007
AcuI CTGAAG 3 cut(s) 435, 489, 1086
AcyI GRCGYC 1 cut(s) 221
AfaI GTAC 4 cut(s) 121, 386, 801, 842
AfiI CCNNNNNNNGG 1 cut(s) 234
AflII CTTAAG 1 cut(s) 440
AflIII ACRYGT 1 cut(s) 966
AgsI TTSAA 7 cut(s) 518, 531, 615, 691, 905, 1000, 1021
AhdI GACNNNNNGTC 1 cut(s) 634
AjnI CCWGG 3 cut(s) 339, 739, 1104
AloI GAACNNNNNNTCC 2 cut(s) 683, 715
AluBI AGCT 7 cut(s) 175, 349, 467, 499, 749, 761, 786
AluI AGCT 7 cut(s) 175, 349, 467, 499, 749, 761, 786
Alw21I GWGCWC 3 cut(s) 79, 675, 874
Alw26I GTCTC 3 cut(s) 189, 297, 562
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 2 cut(s) 596, 1064
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 5 cut(s) 198, 201, 204, 207, 210
ApoI RAATTY 3 cut(s) 247, 605, 1007
AspLEI GCGC 2 cut(s) 297, 848
AspS9I GGNCC 2 cut(s) 60, 86
AsuC2I CCSGG 3 cut(s) 67, 229, 512
AsuHPI GGTGA 5 cut(s) 548, 672, 920, 964, 1000
AvaII GGWCC 2 cut(s) 60, 86
AxyI CCTNAGG 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 512
BanI GGYRCC 1 cut(s) 752
BauI CACGAG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 525
Bbv12I GWGCWC 3 cut(s) 79, 675, 874
BbvI GCAGC 5 cut(s) 210, 213, 216, 219, 222
BccI CCATC 3 cut(s) 713, 773, 1088
BciT130I CCWGG 3 cut(s) 341, 741, 1106
BcnI CCSGG 3 cut(s) 67, 229, 512
BcoDI GTCTC 3 cut(s) 189, 297, 562
BfaI CTAG 1 cut(s) 746
BfrI CTTAAG 1 cut(s) 440
BfuAI ACCTGC 1 cut(s) 922
BisI GCNGC 6 cut(s) 36, 199, 202, 205, 208, 211
BlpI GCTNAGC 1 cut(s) 345
BlsI GCNGC 6 cut(s) 37, 200, 203, 206, 209, 212
Bme1390I CCNGG 6 cut(s) 67, 229, 341, 512, 741, 1106
Bme18I GGWCC 2 cut(s) 60, 86
BmeRI GACNNNNNGTC 1 cut(s) 634
BmgT120I GGNCC 2 cut(s) 60, 86
BmiI GGNNCC 4 cut(s) 164, 267, 700, 754
BmrFI CCNGG 6 cut(s) 67, 229, 341, 512, 741, 1106
BmsI GCATC 4 cut(s) 544, 566, 734, 1051
BpiI GAAGAC 1 cut(s) 525
Bpu1102I GCTNAGC 1 cut(s) 345
BpuMI CCSGG 3 cut(s) 67, 229, 512
BsaAI YACGTR 1 cut(s) 803
BsaHI GRCGYC 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 562
BsaJI CCNNGG 3 cut(s) 227, 694, 739
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 4 cut(s) 263, 293, 294, 324
Bsc4I CCNNNNNNNGG 1 cut(s) 234
Bse118I RCCGGY 1 cut(s) 256
Bse21I CCTNAGG 1 cut(s) 1037
BseBI CCWGG 3 cut(s) 341, 741, 1106
BseDI CCNNGG 3 cut(s) 227, 694, 739
BseGI GGATG 2 cut(s) 557, 559
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 359, 588, 1044, 1051
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 5 cut(s) 210, 213, 216, 219, 222
BsgI GTGCAG 1 cut(s) 524
Bsh1236I CGCG 2 cut(s) 235, 846
Bsh1285I CGRYCG 1 cut(s) 233
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 752
BsiEI CGRYCG 1 cut(s) 233
BsiHKAI GWGCWC 3 cut(s) 79, 675, 874
BsiSI CCGG 6 cut(s) 66, 229, 257, 269, 512, 756
BslFI GGGAC 2 cut(s) 82, 1056
BslI CCNNNNNNNGG 1 cut(s) 234
BsmAI GTCTC 3 cut(s) 189, 297, 562
BsmBI CGTCTC 2 cut(s) 189, 297
BsmFI GGGAC 2 cut(s) 82, 1056
BsmI GAATGC 1 cut(s) 451
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 562
Bsp1286I GDGCHC 4 cut(s) 79, 512, 675, 874
Bsp1407I TGTACA 1 cut(s) 384
Bsp143I GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
Bsp1720I GCTNAGC 1 cut(s) 345
BspACI CCGC 5 cut(s) 35, 63, 84, 235, 844
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 4 cut(s) 358, 589, 1045, 1050
BspFNI CGCG 2 cut(s) 235, 846
BspLI GGNNCC 4 cut(s) 164, 267, 700, 754
BspMI ACCTGC 1 cut(s) 922
BspPI GGATC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 361
BspT107I GGYRCC 1 cut(s) 752
BspTI CTTAAG 1 cut(s) 440
BspTNI GGTCTC 1 cut(s) 562
BsrFI RCCGGY 1 cut(s) 256
BsrGI TGTACA 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 227, 694, 739
BssMI GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
BssNI GRCGYC 1 cut(s) 221
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 341, 741, 1106
Bst4CI ACNGT 2 cut(s) 582, 695
Bst6I CTCTTC 3 cut(s) 95, 361, 978
BstACI GRCGYC 1 cut(s) 221
BstAFI CTTAAG 1 cut(s) 440
BstAUI TGTACA 1 cut(s) 384
BstBAI YACGTR 1 cut(s) 803
BstC8I GCNNGC 3 cut(s) 497, 648, 771
BstDEI CTNAG 6 cut(s) 142, 345, 597, 875, 1037, 1053
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 2 cut(s) 557, 559
BstFNI CGCG 2 cut(s) 235, 846
BstHHI GCGC 2 cut(s) 297, 848
BstKTI GATC 6 cut(s) 370, 487, 634, 661, 792, 1026
BstMAI GTCTC 3 cut(s) 189, 297, 562
BstMBI GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
BstMCI CGRYCG 1 cut(s) 233
BstMWI GCNNNNNNNGC 6 cut(s) 198, 204, 207, 210, 232, 1076
BstNI CCWGG 3 cut(s) 341, 741, 1106
BstNSI RCATGY 2 cut(s) 650, 970
BstSCI CCNGG 6 cut(s) 65, 227, 339, 510, 739, 1104
BstSLI GKGCMC 1 cut(s) 512
BstUI CGCG 2 cut(s) 235, 846
BstV1I GCAGC 5 cut(s) 210, 213, 216, 219, 222
BstV2I GAAGAC 1 cut(s) 525
Bsu36I CCTNAGG 1 cut(s) 1037
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 2 cut(s) 557, 559
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 4 cut(s) 156, 337, 411, 512
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 3 cut(s) 497, 648, 771
CaiI CAGNNNCTG 2 cut(s) 596, 1064
CfoI GCGC 2 cut(s) 297, 848
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 2 cut(s) 60, 86
CpoI CGGWCCG 1 cut(s) 60
Csp6I GTAC 4 cut(s) 120, 385, 800, 841
CspI CGGWCCG 1 cut(s) 60
CviAII CATG 3 cut(s) 647, 967, 1031
CviQI GTAC 4 cut(s) 120, 385, 800, 841
DdeI CTNAG 6 cut(s) 142, 345, 597, 875, 1037, 1053
DpnI GATC 6 cut(s) 369, 486, 633, 660, 791, 1025
DpnII GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
DrdI GACNNNNNNGTC 1 cut(s) 58
DriI GACNNNNNGTC 1 cut(s) 634
DseDI GACNNNNNNGTC 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 3 cut(s) 95, 361, 978
Eam1105I GACNNNNNGTC 1 cut(s) 634
EarI CTCTTC 3 cut(s) 95, 361, 978
EciI GGCGGA 1 cut(s) 52
Eco31I GGTCTC 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 60, 86
Eco57I CTGAAG 3 cut(s) 435, 489, 1086
Eco81I CCTNAGG 1 cut(s) 1037
EcoRI GAATTC 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 339, 739, 1104
EcoT22I ATGCAT 1 cut(s) 559
Esp3I CGTCTC 2 cut(s) 189, 297
FaeI CATG 3 cut(s) 650, 970, 1034
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 471, 503
FaqI GGGAC 2 cut(s) 82, 1056
FatI CATG 3 cut(s) 646, 966, 1030
Fnu4HI GCNGC 6 cut(s) 36, 199, 202, 205, 208, 211
FokI GGATG 2 cut(s) 544, 566
Fsp4HI GCNGC 6 cut(s) 36, 199, 202, 205, 208, 211
FspBI CTAG 1 cut(s) 746
FspI TGCGCA 1 cut(s) 296
GlaI GCGC 2 cut(s) 296, 847
GluI GCNGC 6 cut(s) 36, 199, 202, 205, 208, 211
HaeIII GGCC 1 cut(s) 38
HapII CCGG 6 cut(s) 66, 229, 257, 269, 512, 756
HhaI GCGC 2 cut(s) 297, 848
Hin1I GRCGYC 1 cut(s) 221
Hin1II CATG 3 cut(s) 650, 970, 1034
Hin6I GCGC 2 cut(s) 295, 846
HinP1I GCGC 2 cut(s) 295, 846
HindIII AAGCTT 2 cut(s) 497, 784
HinfI GANTC 5 cut(s) 146, 278, 395, 677, 911
HpaII CCGG 6 cut(s) 66, 229, 257, 269, 512, 756
HphI GGTGA 5 cut(s) 548, 672, 920, 964, 1000
Hpy166II GTNNAC 2 cut(s) 385, 437
Hpy188I TCNGA 5 cut(s) 47, 253, 628, 973, 1054
Hpy188III TCNNGA 4 cut(s) 186, 639, 1021, 1116
Hpy8I GTNNAC 2 cut(s) 385, 437
Hpy99I CGWCG 2 cut(s) 223, 226
HpyAV CCTTC 6 cut(s) 99, 292, 800, 943, 994, 1027
HpyCH4III ACNGT 2 cut(s) 582, 695
HpyCH4IV ACGT 3 cut(s) 221, 306, 802
HpyCH4V TGCA 4 cut(s) 505, 557, 725, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 204, 207, 210, 232, 1076
HpyF3I CTNAG 6 cut(s) 142, 345, 597, 875, 1037, 1053
HpySE526I ACGT 3 cut(s) 221, 306, 802
Hsp92I GRCGYC 1 cut(s) 221
Hsp92II CATG 3 cut(s) 650, 970, 1034
HspAI GCGC 2 cut(s) 295, 846
Kzo9I GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
LguI GCTCTTC 1 cut(s) 361
LmnI GCTCC 1 cut(s) 758
Lsp1109I GCAGC 5 cut(s) 210, 213, 216, 219, 222
LweI GCATC 4 cut(s) 544, 566, 734, 1051
MaeI CTAG 1 cut(s) 746
MaeII ACGT 3 cut(s) 221, 306, 802
MaeIII GTNAC 1 cut(s) 908
MalI GATC 6 cut(s) 369, 486, 633, 660, 791, 1025
MboI GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
MhlI GDGCHC 4 cut(s) 79, 512, 675, 874
MluCI AATT 4 cut(s) 247, 605, 995, 1007
MlyI GAGTC 3 cut(s) 272, 404, 905
MnlI CCTC 8 cut(s) 34, 153, 381, 592, 979, 1046, 1048, 1102
Mph1103I ATGCAT 1 cut(s) 559
MseI TTAA 4 cut(s) 134, 441, 549, 863
MspA1I CMGCKG 1 cut(s) 35
MspCI CTTAAG 1 cut(s) 440
MspI CCGG 6 cut(s) 66, 229, 257, 269, 512, 756
MspR9I CCNGG 6 cut(s) 67, 229, 341, 512, 741, 1106
Mva1269I GAATGC 1 cut(s) 451
MvaI CCWGG 3 cut(s) 341, 741, 1106
MvnI CGCG 2 cut(s) 235, 846
MwoI GCNNNNNNNGC 6 cut(s) 198, 204, 207, 210, 232, 1076
NciI CCSGG 3 cut(s) 67, 229, 512
NdeII GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
NlaIII CATG 3 cut(s) 650, 970, 1034
NlaIV GGNNCC 4 cut(s) 164, 267, 700, 754
NmeAIII GCCGAG 2 cut(s) 330, 862
NmuCI GTSAC 1 cut(s) 908
NsbI TGCGCA 1 cut(s) 296
NsiI ATGCAT 1 cut(s) 559
NspI RCATGY 2 cut(s) 650, 970
PaeI GCATGC 1 cut(s) 650
PciI ACATGT 1 cut(s) 966
PciSI GCTCTTC 1 cut(s) 361
PctI GAATGC 1 cut(s) 451
PfeI GAWTC 2 cut(s) 146, 677
PflFI GACNNNGTC 1 cut(s) 308
PfoI TCCNGGA 1 cut(s) 1104
PkrI GCNGC 6 cut(s) 37, 200, 203, 206, 209, 212
PleI GAGTC 3 cut(s) 272, 403, 905
PpsI GAGTC 3 cut(s) 272, 403, 905
Ppu21I YACGTR 1 cut(s) 803
PscI ACATGT 1 cut(s) 966
PsiI TTATAA 1 cut(s) 321
Psp6I CCWGG 3 cut(s) 339, 739, 1104
PspGI CCWGG 3 cut(s) 339, 739, 1104
PspN4I GGNNCC 4 cut(s) 164, 267, 700, 754
PspPI GGNCC 2 cut(s) 60, 86
PstNI CAGNNNCTG 2 cut(s) 596, 1064
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 4 cut(s) 121, 386, 801, 842
RsaNI GTAC 4 cut(s) 120, 385, 800, 841
Rsr2I CGGWCCG 1 cut(s) 60
RsrII CGGWCCG 1 cut(s) 60
SapI GCTCTTC 1 cut(s) 361
SaqAI TTAA 4 cut(s) 134, 441, 549, 863
SatI GCNGC 6 cut(s) 36, 199, 202, 205, 208, 211
Sau3AI GATC 6 cut(s) 367, 484, 631, 658, 789, 1023
Sau96I GGNCC 2 cut(s) 60, 86
SchI GAGTC 3 cut(s) 272, 404, 905
ScrFI CCNGG 6 cut(s) 67, 229, 341, 512, 741, 1106
SduI GDGCHC 4 cut(s) 79, 512, 675, 874
SfaNI GCATC 4 cut(s) 544, 566, 734, 1051
SinI GGWCC 2 cut(s) 60, 86
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 650
Sse9I AATT 4 cut(s) 247, 605, 995, 1007
SsiI CCGC 5 cut(s) 35, 63, 84, 235, 844
SspMI CTAG 1 cut(s) 746
StyD4I CCNGG 6 cut(s) 65, 227, 339, 510, 739, 1104
TaaI ACNGT 2 cut(s) 582, 695
TaiI ACGT 3 cut(s) 224, 309, 805
TaqI TCGA 6 cut(s) 187, 245, 359, 638, 675, 728
TaqII GACCGA 1 cut(s) 48
TasI AATT 4 cut(s) 247, 605, 995, 1007
TatI WGTACW 2 cut(s) 119, 384
TauI GCSGC 1 cut(s) 38
TfiI GAWTC 2 cut(s) 146, 677
Tru1I TTAA 4 cut(s) 134, 441, 549, 863
Tru9I TTAA 4 cut(s) 134, 441, 549, 863
TscAI CASTG 4 cut(s) 156, 337, 418, 512
TseFI GTSAC 1 cut(s) 908
TseI GCWGC 5 cut(s) 198, 201, 204, 207, 210
Tsp45I GTSAC 1 cut(s) 908
TspDTI ATGAA 3 cut(s) 17, 610, 996
TspRI CASTG 4 cut(s) 156, 337, 418, 512
Tth111I GACNNNGTC 1 cut(s) 308
Vha464I CTTAAG 1 cut(s) 440
VpaK11BI GGWCC 2 cut(s) 60, 86
XapI RAATTY 3 cut(s) 247, 605, 1007
XceI RCATGY 2 cut(s) 650, 970
XcmI CCANNNNNNNNNTGG 2 cut(s) 581, 1112
XspI CTAG 1 cut(s) 746
ZraI GACGTC 1 cut(s) 222
Zsp2I ATGCAT 1 cut(s) 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.