Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001415

Physical Location & Seq

Genomic Coordinates Forward (+)

32479166 .. 32481932

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34981.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAACTTCTCGTCACACGTTTCGTACACAACCCCCATTTTCCGGACGACGGGTCGTTTCTACGCCACCATCTCTTCTCCTCCTTCTCCGTGGTTAACAAAACCGAGCCTTTCAGCTGGAATCAAGTCAGTTAAAGCTGAATCAGCGCTGACCAGAGTCAATCTCCAGCTCCGAAGTAATGGCAGCAAAACGACGTCGTGTTGCTCTCGGACGCACGCAATGGAAGCGGAAAAAGAAGAAGCCTTCTATTTAGTTCGGAAAGGAGATATTGTCGGCGTGTATAGGAGTTTCGGTGATTGTCAGAAGCAGATTGGTTCCTCGATATGCGATCCTCCTGTTAGTGTGTACAAAGGATACTGCTTGCCAAAGGAAACCGAAGAACATCTTGTGGCTTTTGGACTTAGCAATGCCCTTTACACAATCAGAGCTCAAGATTTGAAGCCGGATCATTTCGGCAAGCTTATGCTGTGCCCTTTTCATGAGCCAGCACCTACAGAATGTGAAGAATTTGTCGCGGATACATCTGTATATATCTCTGATGAAGTGCCTGGATCGGAAAATGTGGGGTTTTGTACTCTCGAGTTTGATGGCGCGTCAAAAGGAAACCCTGGACTGGCTGGTGCTGGAGCTGTGCTGCGAGCTGATGATGGAAGTTTGATCGGTAAAGTTCATGAAGGTCTGGGTATCAAGACCAATAATGTTGCTGAGTACCGAGCTCTGATATTGGGGTTAAAATATGCGTTGAAGAAAGGTTTTACTAAGATTCGAGTCCAAGGTGATTCCAAACTCGTTTGTATGCAGGTTCAAGGTTTATGGAAGGTCAAAAACCAGAATATGTCTGACTTGTGTGAAGAGGTGAAGGAACTGAAAGAAAAATTTGTCTCCTTTGAGATCAGTCATGTTCTGAGGGATAAGAATTCAGAGGCAGATGCTCAAGCAAACTTGGCAGTTCGTCTTAGTGAGGATGAAGTCTATGAAGTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cauli_VI DUF393 RVT_3

Protein Analysis

329

Amino Acids

35.99

Weight (kDa)

6.21

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	195 - 315	3.5e-27	Reverse transcriptase-like
RNase_H	PF00075	196 - 299	3.7e-09	RNase H

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_2g39271 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981 FvH4_4g34981
malus_domestica	MD15G1022000.v1.1 MD16G1087400.v1.1
prunus_persica	Prupe.1G259600_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1 Prupe.1G373800_v2.0.a1
pyrus_communis	pycom09g11760 pycom15g01830 pycom16g07500
rosa_chinensis	RchiOBHm_Chr4g0444511 RchiOBHm_Chr6g0245201 RchiOBHm_Chr6g0301731
rosa_laevigata	RLG00000005828 RLG00000011227 RLG00000015316
rosa_roxburghii	Rroxscaffold_3G00242180 Rroxscaffold_5G00384990 Rroxscaffold_7G00166470 Rroxscaffold_7G00215360
rosa_rugosa	Rorug03G0154200
rosa_samantha	Rh4AG413500 Rh4BG425000 Rh4CG439600 Rh4DG420500 Rh6AG027900 Rh6AG421000 Rh6BG024100 Rh6BG427700 Rh6CG434300 Rh6DG421200
rosa_wichuraiana	Rw4G035520 Rw6G002360 Rw6G036440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	197
Acc36I	ACCTGC	1 cut(s)	790
AccII	CGCG	2 cut(s)	515, 593
AccIII	TCCGGA	1 cut(s)	42
AciI	CCGC	2 cut(s)	227, 515
AclWI	GGATC	3 cut(s)	323, 453, 559
AcsI	RAATTY	3 cut(s)	506, 875, 916
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	4 cut(s)	26, 347, 574, 710
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	3 cut(s)	42, 49, 613
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	439, 745, 806
AhdI	GACNNNNNGTC	1 cut(s)	51
AjnI	CCWGG	2 cut(s)	547, 607
AluBI	AGCT	8 cut(s)	116, 137, 169, 428, 460, 629, 641, 716
AluI	AGCT	8 cut(s)	116, 137, 169, 428, 460, 629, 641, 716
Alw21I	GWGCWC	2 cut(s)	430, 718
Alw26I	GTCTC	1 cut(s)	886
AlwI	GGATC	3 cut(s)	323, 453, 559
Ama87I	CYCGRG	1 cut(s)	578
Aor13HI	TCCGGA	1 cut(s)	42
Aor51HI	AGCGCT	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	183, 634
ApoI	RAATTY	3 cut(s)	506, 875, 916
AspLEI	GCGC	2 cut(s)	148, 593
AsuHPI	GGTGA	3 cut(s)	305, 788, 868
AvaI	CYCGRG	1 cut(s)	578
BaeGI	GKGCMC	1 cut(s)	473
BaeI	ACNNNNGTAYC	2 cut(s)	510, 543
BanII	GRGCYC	2 cut(s)	430, 718
Bbv12I	GWGCWC	2 cut(s)	430, 718
BbvI	GCAGC	2 cut(s)	195, 621
BccI	CCATC	3 cut(s)	77, 581, 641
BciT130I	CCWGG	2 cut(s)	549, 609
BciVI	GTATCC	2 cut(s)	347, 511
BcoDI	GTCTC	1 cut(s)	886
BfmI	CTRYAG	1 cut(s)	492
BfoI	RGCGCY	1 cut(s)	149
BfuAI	ACCTGC	1 cut(s)	790
BfuI	GTATCC	2 cut(s)	347, 511
BisI	GCNGC	2 cut(s)	184, 635
BlsI	GCNGC	2 cut(s)	185, 636
Bme1390I	CCNGG	2 cut(s)	549, 609
BmeRI	GACNNNNNGTC	1 cut(s)	51
BmeT110I	CYCGRG	1 cut(s)	578
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	549, 609
BmsI	GCATC	1 cut(s)	919
BoxI	GACNNNNGTC	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	147, 179
BpmI	CTGGAG	2 cut(s)	149, 645
BpuEI	CTTGAG	2 cut(s)	414, 918
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	3 cut(s)	89, 607, 772
BsaWI	WCCGGW	1 cut(s)	42
BsaXI	ACNNNNNCTCC	4 cut(s)	255, 277, 285, 307
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 49, 613
Bse1I	ACTGG	1 cut(s)	618
Bse3DI	GCAATG	2 cut(s)	225, 412
BseAI	TCCGGA	1 cut(s)	42
BseBI	CCWGG	2 cut(s)	549, 609
BseDI	CCNNGG	3 cut(s)	89, 607, 772
BseGI	GGATG	1 cut(s)	970
BseLI	CCNNNNNNNGG	3 cut(s)	42, 49, 613
BseMI	GCAATG	2 cut(s)	225, 412
BseMII	CTCAG	2 cut(s)	696, 896
BseNI	ACTGG	1 cut(s)	618
BseRI	GAGGAG	1 cut(s)	69
BseSI	GKGCMC	1 cut(s)	473
BseXI	GCAGC	2 cut(s)	195, 621
Bsh1236I	CGCG	2 cut(s)	515, 593
BsiHKAI	GWGCWC	2 cut(s)	430, 718
BsiHKCI	CYCGRG	1 cut(s)	578
BsiSI	CCGG	2 cut(s)	43, 443
BslI	CCNNNNNNNGG	3 cut(s)	42, 49, 613
BsmAI	GTCTC	1 cut(s)	886
BsoBI	CYCGRG	1 cut(s)	578
Bsp1286I	GDGCHC	3 cut(s)	430, 473, 718
Bsp13I	TCCGGA	1 cut(s)	42
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	328, 445, 551, 657, 891
BspACI	CCGC	2 cut(s)	227, 515
BspCNI	CTCAG	2 cut(s)	697, 897
BspEI	TCCGGA	1 cut(s)	42
BspFNI	CGCG	2 cut(s)	515, 593
BspHI	TCATGA	2 cut(s)	478, 670
BspLI	GGNNCC	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	790
BspPI	GGATC	3 cut(s)	323, 453, 559
BsrDI	GCAATG	2 cut(s)	225, 412
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	1 cut(s)	618
BssECI	CCNNGG	3 cut(s)	89, 607, 772
BssMI	GATC	5 cut(s)	328, 445, 551, 657, 891
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	2 cut(s)	549, 609
Bst6I	CTCTTC	2 cut(s)	79, 846
BstACI	GRCGYC	1 cut(s)	194
BstAUI	TGTACA	1 cut(s)	345
BstC8I	GCNNGC	5 cut(s)	216, 362, 458, 486, 639
BstDEI	CTNAG	5 cut(s)	401, 705, 759, 905, 956
BstDSI	CCRYGG	1 cut(s)	89
BstF5I	GGATG	1 cut(s)	970
BstFNI	CGCG	2 cut(s)	515, 593
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	2 cut(s)	148, 593
BstKTI	GATC	5 cut(s)	331, 448, 554, 660, 894
BstMAI	GTCTC	1 cut(s)	886
BstMBI	GATC	5 cut(s)	328, 445, 551, 657, 891
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 224, 944
BstNI	CCWGG	2 cut(s)	549, 609
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	547, 607
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	473
BstUI	CGCG	2 cut(s)	515, 593
BstV1I	GCAGC	2 cut(s)	195, 621
BsuI	GTATCC	2 cut(s)	347, 511
BtgI	CCRYGG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	970
BveI	ACCTGC	1 cut(s)	790
Cac8I	GCNNGC	5 cut(s)	216, 362, 458, 486, 639
CciI	TCATGA	2 cut(s)	478, 670
CfoI	GCGC	2 cut(s)	148, 593
CseI	GACGC	2 cut(s)	220, 582
Csp6I	GTAC	4 cut(s)	25, 346, 573, 709
CviAII	CATG	3 cut(s)	479, 671, 899
CviQI	GTAC	4 cut(s)	25, 346, 573, 709
DdeI	CTNAG	5 cut(s)	401, 705, 759, 905, 956
DpnI	GATC	5 cut(s)	330, 447, 553, 659, 893
DpnII	GATC	5 cut(s)	328, 445, 551, 657, 891
DriI	GACNNNNNGTC	1 cut(s)	51
Eam1104I	CTCTTC	2 cut(s)	79, 846
Eam1105I	GACNNNNNGTC	1 cut(s)	51
EarI	CTCTTC	2 cut(s)	79, 846
Ecl136II	GAGCTC	2 cut(s)	428, 716
Eco130I	CCWWGG	1 cut(s)	772
Eco24I	GRGCYC	2 cut(s)	430, 718
Eco47III	AGCGCT	1 cut(s)	147
Eco53kI	GAGCTC	2 cut(s)	428, 716
Eco88I	CYCGRG	1 cut(s)	578
EcoICRI	GAGCTC	2 cut(s)	428, 716
EcoRI	GAATTC	1 cut(s)	916
EcoRII	CCWGG	2 cut(s)	547, 607
EcoT14I	CCWWGG	1 cut(s)	772
EcoT38I	GRGCYC	2 cut(s)	430, 718
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	3 cut(s)	482, 674, 902
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FatI	CATG	3 cut(s)	478, 670, 898
Fnu4HI	GCNGC	2 cut(s)	184, 635
FokI	GGATG	1 cut(s)	977
FriOI	GRGCYC	2 cut(s)	430, 718
Fsp4HI	GCNGC	2 cut(s)	184, 635
GlaI	GCGC	2 cut(s)	147, 592
GluI	GCNGC	2 cut(s)	184, 635
GsuI	CTGGAG	2 cut(s)	149, 645
HaeII	RGCGCY	1 cut(s)	149
HapII	CCGG	2 cut(s)	43, 443
HgaI	GACGC	2 cut(s)	220, 582
HhaI	GCGC	2 cut(s)	148, 593
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	3 cut(s)	482, 674, 902
Hin6I	GCGC	2 cut(s)	146, 591
HinP1I	GCGC	2 cut(s)	146, 591
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	6 cut(s)	120, 140, 156, 763, 768, 779
HpaI	GTTAAC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	43, 443
HphI	GGTGA	3 cut(s)	305, 788, 868
Hpy166II	GTNNAC	3 cut(s)	27, 96, 346
Hpy188III	TCNNGA	6 cut(s)	43, 431, 479, 578, 671, 688
Hpy8I	GTNNAC	3 cut(s)	27, 96, 346
Hpy99I	CGWCG	3 cut(s)	52, 196, 199
HpyAV	CCTTC	5 cut(s)	93, 253, 668, 811, 853
HpyCH4IV	ACGT	2 cut(s)	18, 194
HpyCH4V	TGCA	1 cut(s)	799
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 224, 944
HpyF3I	CTNAG	5 cut(s)	401, 705, 759, 905, 956
HpySE526I	ACGT	2 cut(s)	18, 194
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	482, 674, 902
HspAI	GCGC	2 cut(s)	146, 591
Kpn2I	TCCGGA	1 cut(s)	42
KspAI	GTTAAC	1 cut(s)	96
Kzo9I	GATC	5 cut(s)	328, 445, 551, 657, 891
LmnI	GCTCC	2 cut(s)	174, 626
Lsp1109I	GCAGC	2 cut(s)	195, 621
LweI	GCATC	1 cut(s)	919
MaeII	ACGT	2 cut(s)	18, 194
MaeIII	GTNAC	1 cut(s)	12
MalI	GATC	5 cut(s)	330, 447, 553, 659, 893
MboI	GATC	5 cut(s)	328, 445, 551, 657, 891
MboII	GAAGA	6 cut(s)	66, 248, 389, 515, 757, 863
MhlI	GDGCHC	3 cut(s)	430, 473, 718
MluCI	AATT	3 cut(s)	506, 875, 916
MlyI	GAGTC	2 cut(s)	165, 777
MnlI	CCTC	7 cut(s)	90, 328, 342, 847, 900, 916, 955
MroI	TCCGGA	1 cut(s)	42
MseI	TTAA	4 cut(s)	95, 132, 731, 985
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	43, 443
MspR9I	CCNGG	2 cut(s)	549, 609
MvaI	CCWGG	2 cut(s)	549, 609
MvnI	CGCG	2 cut(s)	515, 593
MwoI	GCNNNNNNNGC	3 cut(s)	143, 224, 944
NdeII	GATC	5 cut(s)	328, 445, 551, 657, 891
NlaIII	CATG	3 cut(s)	482, 674, 902
NlaIV	GGNNCC	1 cut(s)	316
NmuCI	GTSAC	1 cut(s)	12
PaeR7I	CTCGAG	1 cut(s)	578
PagI	TCATGA	2 cut(s)	478, 670
PfeI	GAWTC	4 cut(s)	120, 140, 763, 779
PkrI	GCNGC	2 cut(s)	185, 636
PleI	GAGTC	2 cut(s)	164, 776
PpsI	GAGTC	2 cut(s)	164, 776
PshAI	GACNNNNGTC	1 cut(s)	155
Psp124BI	GAGCTC	2 cut(s)	430, 718
Psp6I	CCWGG	2 cut(s)	547, 607
PspGI	CCWGG	2 cut(s)	547, 607
PspN4I	GGNNCC	1 cut(s)	316
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	4 cut(s)	26, 347, 574, 710
RsaNI	GTAC	4 cut(s)	25, 346, 573, 709
SacI	GAGCTC	2 cut(s)	430, 718
SaqAI	TTAA	4 cut(s)	95, 132, 731, 985
SatI	GCNGC	2 cut(s)	184, 635
Sau3AI	GATC	5 cut(s)	328, 445, 551, 657, 891
SchI	GAGTC	2 cut(s)	165, 777
ScrFI	CCNGG	2 cut(s)	549, 609
SduI	GDGCHC	3 cut(s)	430, 473, 718
SfaNI	GCATC	1 cut(s)	919
SfcI	CTRYAG	1 cut(s)	492
Sfr274I	CTCGAG	1 cut(s)	578
SlaI	CTCGAG	1 cut(s)	578
SmlI	CTYRAG	3 cut(s)	429, 578, 933
SmoI	CTYRAG	3 cut(s)	429, 578, 933
Sse9I	AATT	3 cut(s)	506, 875, 916
SsiI	CCGC	2 cut(s)	227, 515
SstI	GAGCTC	2 cut(s)	430, 718
StyD4I	CCNGG	2 cut(s)	547, 607
StyI	CCWWGG	1 cut(s)	772
TaiI	ACGT	2 cut(s)	21, 197
TaqI	TCGA	3 cut(s)	320, 579, 766
TasI	AATT	3 cut(s)	506, 875, 916
TatI	WGTACW	2 cut(s)	345, 572
TfiI	GAWTC	4 cut(s)	120, 140, 763, 779
Tru1I	TTAA	4 cut(s)	95, 132, 731, 985
Tru9I	TTAA	4 cut(s)	95, 132, 731, 985
TseFI	GTSAC	1 cut(s)	12
TseI	GCWGC	2 cut(s)	183, 634
Tsp45I	GTSAC	1 cut(s)	12
TspDTI	ATGAA	6 cut(s)	17, 467, 555, 659, 687, 981
TspGWI	ACGGA	1 cut(s)	78
XapI	RAATTY	3 cut(s)	506, 875, 916
XhoI	CTCGAG	1 cut(s)	578
ZraI	GACGTC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.