Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

28270776 .. 28272690

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATTCCAAATGCATGTGCCAGACCCGGTGGGTTTATCTCTGTGAATTCGAGAGTATGTAAGCCCTCGATATGCAGTAGTCCTGTGTTGTCATGCGCTCCTCGTTTTCGGAGTAAGAGTGCTTTTCAATGCATCAGTTCATGGAGTTCTTCTCAGAAAGCTATGCCACTTCTGCACCCTTGTGCTGCGTCGAGCCCATTTTTCAGTGGGGATCAAGGCAGTCTTTTACGCATGATGCCCACATTGCAAAGGCGAGGCAAATCTAGTATGGCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCGGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGAGGACATTGGCATGTCTCCCCTACTTAATGCCCCTACACGAGACATGGATGTATGCTGAGACAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCGTTCCTTGGTGCCATTGGGAGCTTGCCCAGCTGGTTCTTGATGGCCTACTTTTTCGTTGCATATCTTGGAATTGTGAGGAGAAAGGAGTGGCCTCACTTCTTCAGATTTCATGTCGTGATGGGCATGCTGCTGGAGATTGCGTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTGTTTACTGGGGTAAATTTGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGTGCATACGCTGCGCTCTTGCTGGTATGTATGCTGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTACGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

266

Amino Acids

30.37

Weight (kDa)

9.27

Isoelectric Point (pI)

60.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	85 - 258	6.5e-73	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	426, 595
Acc36I	ACCTGC	2 cut(s)	426, 595
AccB1I	GGYRCC	1 cut(s)	467
AclWI	GGATC	1 cut(s)	219
AcsI	RAATTY	3 cut(s)	46, 656, 783
AcuI	CTGAAG	1 cut(s)	544
AfiI	CCNNNNNNNGG	2 cut(s)	430, 464
AgsI	TTSAA	2 cut(s)	128, 782
AjnI	CCWGG	1 cut(s)	429
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	3 cut(s)	161, 480, 489
AluI	AGCT	3 cut(s)	161, 480, 489
Alw26I	GTCTC	3 cut(s)	365, 380, 398
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	3 cut(s)	270, 501, 548
ApeKI	GCWGC	4 cut(s)	185, 586, 723, 770
ApoI	RAATTY	3 cut(s)	46, 656, 783
AspLEI	GCGC	2 cut(s)	98, 728
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	27
AsuHPI	GGTGA	2 cut(s)	407, 619
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	4 cut(s)	172, 573, 710, 757
BccI	CCATC	2 cut(s)	493, 571
BceAI	ACGGC	2 cut(s)	609, 665
BciT130I	CCWGG	1 cut(s)	431
BcnI	CCSGG	1 cut(s)	27
BcoDI	GTCTC	3 cut(s)	365, 380, 398
BfaI	CTAG	1 cut(s)	264
BfuAI	ACCTGC	2 cut(s)	426, 595
BisI	GCNGC	4 cut(s)	186, 587, 724, 771
BlsI	GCNGC	4 cut(s)	187, 588, 725, 772
Bme1390I	CCNGG	2 cut(s)	27, 431
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	273, 311, 469
BmrFI	CCNGG	2 cut(s)	27, 431
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	6 cut(s)	141, 225, 290, 621, 654, 757
BmuI	ACTGGG	1 cut(s)	658
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	27
BsaJI	CCNNGG	1 cut(s)	463
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 584, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 464
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	1 cut(s)	463
BseGI	GGATG	4 cut(s)	295, 399, 636, 669
BseLI	CCNNNNNNNGG	2 cut(s)	430, 464
BseMI	GCAATG	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	167, 393
BseNI	ACTGG	1 cut(s)	653
BseRI	GAGGAG	2 cut(s)	90, 550
BseXI	GCAGC	4 cut(s)	172, 573, 710, 757
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	2 cut(s)	158, 404
BshFI	GGCC	3 cut(s)	272, 503, 550
BshNI	GGYRCC	1 cut(s)	467
BsiSI	CCGG	1 cut(s)	27
BslFI	GGGAC	2 cut(s)	278, 628
BslI	CCNNNNNNNGG	2 cut(s)	430, 464
BsmAI	GTCTC	3 cut(s)	365, 380, 398
BsmFI	GGGAC	2 cut(s)	278, 628
BsnI	GGCC	3 cut(s)	272, 503, 550
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	211
BspANI	GGCC	3 cut(s)	272, 503, 550
BspCNI	CTCAG	2 cut(s)	166, 394
BspLI	GGNNCC	3 cut(s)	273, 311, 469
BspMI	ACCTGC	2 cut(s)	426, 595
BspPI	GGATC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	467
BsrDI	GCAATG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	653
BssECI	CCNNGG	1 cut(s)	463
BssMI	GATC	1 cut(s)	211
BssSI	CACGAG	1 cut(s)	383
BssT1I	CCWWGG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	3 cut(s)	302, 619, 706
BstAPI	GCANNNNNTGC	1 cut(s)	723
BstC8I	GCNNGC	2 cut(s)	482, 584
BstDEI	CTNAG	3 cut(s)	153, 285, 402
BstF5I	GGATG	4 cut(s)	295, 399, 636, 669
BstHHI	GCGC	2 cut(s)	98, 728
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	3 cut(s)	365, 380, 398
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	6 cut(s)	172, 244, 278, 407, 486, 723
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	3 cut(s)	18, 360, 586
BstSCI	CCNGG	2 cut(s)	25, 429
BstV1I	GCAGC	4 cut(s)	172, 573, 710, 757
BstV2I	GAAGAC	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	272, 503, 550
BtsCI	GGATG	4 cut(s)	295, 399, 636, 669
BtsIMutI	CAGTG	2 cut(s)	211, 711
BveI	ACCTGC	2 cut(s)	426, 595
Cac8I	GCNNGC	2 cut(s)	482, 584
CfoI	GCGC	2 cut(s)	98, 728
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	177
CviAII	CATG	9 cut(s)	15, 93, 141, 232, 319, 357, 390, 569, 583
DdeI	CTNAG	3 cut(s)	153, 285, 402
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
Eco130I	CCWWGG	1 cut(s)	463
Eco24I	GRGCYC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	46
EcoRII	CCWGG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	463
EcoT22I	ATGCAT	2 cut(s)	16, 134
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	463
FaeI	CATG	9 cut(s)	18, 96, 144, 235, 322, 360, 393, 572, 586
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	278, 628
FatI	CATG	9 cut(s)	14, 92, 140, 231, 318, 356, 389, 568, 582
Fnu4HI	GCNGC	4 cut(s)	186, 587, 724, 771
FokI	GGATG	4 cut(s)	302, 406, 643, 676
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	4 cut(s)	186, 587, 724, 771
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	97, 727
GluI	GCNGC	4 cut(s)	186, 587, 724, 771
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	272, 503, 550
HapII	CCGG	1 cut(s)	27
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	2 cut(s)	98, 728
Hin1II	CATG	9 cut(s)	18, 96, 144, 235, 322, 360, 393, 572, 586
Hin6I	GCGC	2 cut(s)	96, 726
HinP1I	GCGC	2 cut(s)	96, 726
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	2 cut(s)	407, 619
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	3 cut(s)	111, 156, 563
Hpy188III	TCNNGA	4 cut(s)	51, 496, 574, 673
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	193
HpyCH4III	ACNGT	3 cut(s)	302, 619, 706
HpyF10VI	GCNNNNNNNGC	6 cut(s)	172, 244, 278, 407, 486, 723
HpyF3I	CTNAG	3 cut(s)	153, 285, 402
Hsp92II	CATG	9 cut(s)	18, 96, 144, 235, 322, 360, 393, 572, 586
HspAI	GCGC	2 cut(s)	96, 726
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	2 cut(s)	103, 477
Lsp1109I	GCAGC	4 cut(s)	172, 573, 710, 757
LweI	GCATC	6 cut(s)	141, 225, 290, 621, 654, 757
MaeI	CTAG	1 cut(s)	264
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	5 cut(s)	141, 337, 439, 446, 550
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	4 cut(s)	46, 528, 656, 783
MmeI	TCCRAC	2 cut(s)	608, 690
MnlI	CCTC	8 cut(s)	76, 111, 248, 285, 324, 339, 528, 561
Mph1103I	ATGCAT	2 cut(s)	16, 134
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	2 cut(s)	180, 355
MspA1I	CMGCKG	1 cut(s)	489
MspI	CCGG	1 cut(s)	27
MspR9I	CCNGG	2 cut(s)	27, 431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	6 cut(s)	172, 244, 278, 407, 486, 723
NciI	CCSGG	1 cut(s)	27
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	9 cut(s)	18, 96, 144, 235, 322, 360, 393, 572, 586
NlaIV	GGNNCC	3 cut(s)	273, 311, 469
NsiI	ATGCAT	2 cut(s)	16, 134
NspI	RCATGY	3 cut(s)	18, 360, 586
OliI	CACNNNNGTG	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	586
PaqCI	CACCTGC	2 cut(s)	426, 595
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	4 cut(s)	187, 588, 725, 772
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	273, 311, 469
PspPI	GGNCC	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	489
RseI	CAYNNNNRTG	2 cut(s)	180, 355
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	4 cut(s)	186, 587, 724, 771
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	27, 431
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	6 cut(s)	163, 420, 482, 491, 609, 699
SfaNI	GCATC	6 cut(s)	141, 225, 290, 621, 654, 757
SmiMI	CAYNNNNRTG	2 cut(s)	180, 355
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	4 cut(s)	46, 528, 656, 783
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	2 cut(s)	25, 429
StyI	CCWWGG	1 cut(s)	463
TaaI	ACNGT	3 cut(s)	302, 619, 706
TaqI	TCGA	3 cut(s)	50, 68, 191
TasI	AATT	4 cut(s)	46, 528, 656, 783
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	2 cut(s)	211, 711
TseI	GCWGC	4 cut(s)	185, 586, 723, 770
TspDTI	ATGAA	3 cut(s)	129, 338, 557
TspRI	CASTG	2 cut(s)	211, 711
XapI	RAATTY	3 cut(s)	46, 656, 783
XceI	RCATGY	3 cut(s)	18, 360, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	2 cut(s)	16, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.