Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

1290319 .. 1291776

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1022400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCACCTCTGAACCCTTGTGCTGCATCAAGCCGATTTTTAAGTGGGGATCATGGTAGCTTGTTACGCACAATCCCCGCGTTGCAAAGAAGATACAAATCTCGTATGGCCCCTCAAGCATCTAAGGATGTTCCATACAGTTTTCGGTTCCCTCCAATGACTAAGAAGCCAAAGTGGTGGTGGAGGACGTTAGCCTGTCTCCCCTATTTGATGCCCCTACACGAGACATGGATGTATGCTGAGACAGCGTATCATCTACACCCTTTCCTGGAGGACTTTGAATTCTTAACATACCCTTTCCTCGGAGCCATTGGGAGGTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTGGGAGTTGTGAGGAGAAAGGAATGGCCTCATTTCTTCAGATTTCATGTGGTGATGGGCATGCTGTTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGTCGTTGGATGCCGCTTGCTGTCTACTGGGGTAAGGTTGGGATGCACTTCTGGACGGCCATTGCATTTGCTTACCTTTTTACCGTGTTGGAAGCCATACGTTGTGCTCTTGCTGGCATGTACGCTGATATCCCCTTCGTCTGCGATGCTGCGTATATTCAAATTCCATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

212

Amino Acids

24.67

Weight (kDa)

9.3

Isoelectric Point (pI)

52.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	31 - 204	3.1e-73	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	433
Acc36I	ACCTGC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	80
AciI	CCGC	2 cut(s)	78, 473
AclWI	GGATC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	281, 621
AcuI	CTGAAG	1 cut(s)	382
AfaI	GTAC	1 cut(s)	581
AfiI	CCNNNNNNNGG	3 cut(s)	268, 302, 315
AgsI	TTSAA	2 cut(s)	281, 620
AhdI	GACNNNNNGTC	1 cut(s)	459
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	60, 327
AluI	AGCT	2 cut(s)	60, 327
Alw21I	GWGCWC	1 cut(s)	568
Alw26I	GTCTC	3 cut(s)	203, 218, 236
AlwI	GGATC	1 cut(s)	57
AoxI	GGCC	3 cut(s)	108, 386, 516
ApeKI	GCWGC	2 cut(s)	23, 608
ApoI	RAATTY	2 cut(s)	281, 621
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	424, 457
BauI	CACGAG	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	568
BbvI	GCAGC	2 cut(s)	10, 595
BccI	CCATC	2 cut(s)	331, 409
BceAI	ACGGC	1 cut(s)	531
BciT130I	CCWGG	1 cut(s)	269
BcoDI	GTCTC	3 cut(s)	203, 218, 236
BfuAI	ACCTGC	1 cut(s)	433
BisI	GCNGC	3 cut(s)	24, 473, 609
BlsI	GCNGC	3 cut(s)	25, 474, 610
Bme1390I	CCNGG	1 cut(s)	269
BmeRI	GACNNNNNGTC	1 cut(s)	459
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	3 cut(s)	111, 149, 307
BmrFI	CCNGG	1 cut(s)	269
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	6 cut(s)	35, 128, 201, 459, 492, 595
BmuI	ACTGGG	1 cut(s)	496
BpmI	CTGGAG	1 cut(s)	290
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 302, 315
Bse1I	ACTGG	1 cut(s)	491
Bse3DI	GCAATG	1 cut(s)	519
Bse8I	GATNNNNATC	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	4 cut(s)	133, 237, 474, 507
BseJI	GATNNNNATC	1 cut(s)	97
BseLI	CCNNNNNNNGG	3 cut(s)	268, 302, 315
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	10, 595
BseYI	CCCAGC	1 cut(s)	323
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	110, 388, 518
BsiHKAI	GWGCWC	1 cut(s)	568
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	3 cut(s)	268, 302, 315
BsmAI	GTCTC	3 cut(s)	203, 218, 236
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	3 cut(s)	110, 388, 518
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	2 cut(s)	78, 473
BspANI	GGCC	3 cut(s)	110, 388, 518
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	111, 149, 307
BspMI	ACCTGC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	57
BsrDI	GCAATG	1 cut(s)	519
BsrI	ACTGG	1 cut(s)	491
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	49
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	3 cut(s)	140, 457, 544
BstC8I	GCNNGC	3 cut(s)	422, 477, 574
BstDEI	CTNAG	3 cut(s)	123, 162, 240
BstF5I	GGATG	4 cut(s)	133, 237, 474, 507
BstFNI	CGCG	1 cut(s)	80
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	3 cut(s)	203, 218, 236
BstMBI	GATC	1 cut(s)	49
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 116, 245
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	2 cut(s)	424, 580
BstSCI	CCNGG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	10, 595
BstXI	CCANNNNNNTGG	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	110, 388, 518
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	4 cut(s)	133, 237, 474, 507
BveI	ACCTGC	1 cut(s)	433
Cac8I	GCNNGC	3 cut(s)	422, 477, 574
Cfr13I	GGNCC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	5 cut(s)	53, 228, 407, 421, 577
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	3 cut(s)	123, 162, 240
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	459
EaeI	YGGCCR	1 cut(s)	516
Eam1105I	GACNNNNNGTC	1 cut(s)	459
Eco32I	GATATC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	589
FaeI	CATG	5 cut(s)	56, 231, 410, 424, 580
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	5 cut(s)	52, 227, 406, 420, 576
FauI	CCCGC	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	24, 473, 609
FokI	GGATG	4 cut(s)	140, 244, 481, 514
Fsp4HI	GCNGC	3 cut(s)	24, 473, 609
GluI	GCNGC	3 cut(s)	24, 473, 609
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	3 cut(s)	110, 388, 518
Hin1II	CATG	5 cut(s)	56, 231, 410, 424, 580
HinfI	GANTC	1 cut(s)	460
HphI	GGTGA	2 cut(s)	424, 457
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	3 cut(s)	12, 305, 401
Hpy188III	TCNNGA	2 cut(s)	334, 511
Hpy8I	GTNNAC	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	604
HpyCH4III	ACNGT	3 cut(s)	140, 457, 544
HpyCH4IV	ACGT	2 cut(s)	188, 559
HpyCH4V	TGCA	6 cut(s)	26, 85, 356, 442, 505, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 116, 245
HpyF3I	CTNAG	3 cut(s)	123, 162, 240
HpySE526I	ACGT	2 cut(s)	188, 559
Hsp92II	CATG	5 cut(s)	56, 231, 410, 424, 580
Kzo9I	GATC	1 cut(s)	49
LmnI	GCTCC	1 cut(s)	305
Lsp1109I	GCAGC	2 cut(s)	10, 595
LweI	GCATC	6 cut(s)	35, 128, 201, 459, 492, 595
MaeII	ACGT	2 cut(s)	188, 559
MaeIII	GTNAC	1 cut(s)	63
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	102, 388
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	2 cut(s)	281, 621
MlyI	GAGTC	1 cut(s)	469
MmeI	TCCRAC	3 cut(s)	408, 446, 528
MnlI	CCTC	9 cut(s)	18, 123, 162, 177, 265, 309, 311, 366, 399
MseI	TTAA	2 cut(s)	41, 287
MspA1I	CMGCKG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	269
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	66, 116, 245
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	5 cut(s)	56, 231, 410, 424, 580
NlaIV	GGNNCC	3 cut(s)	111, 149, 307
NspI	RCATGY	2 cut(s)	424, 580
PaeI	GCATGC	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	267
PkrI	GCNGC	3 cut(s)	25, 474, 610
PleI	GAGTC	1 cut(s)	468
PpsI	GAGTC	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	111, 149, 307
PspPI	GGNCC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SaqAI	TTAA	2 cut(s)	41, 287
SatI	GCNGC	3 cut(s)	24, 473, 609
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	1 cut(s)	109
SchI	GAGTC	1 cut(s)	469
ScrFI	CCNGG	1 cut(s)	269
SduI	GDGCHC	1 cut(s)	568
SetI	ASST	9 cut(s)	10, 62, 191, 320, 329, 447, 498, 537, 562
SfaNI	GCATC	6 cut(s)	35, 128, 201, 459, 492, 595
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
SphI	GCATGC	1 cut(s)	424
Sse9I	AATT	2 cut(s)	281, 621
SsiI	CCGC	2 cut(s)	78, 473
StyD4I	CCNGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	140, 457, 544
TaiI	ACGT	2 cut(s)	191, 562
TasI	AATT	2 cut(s)	281, 621
TauI	GCSGC	1 cut(s)	475
Tru1I	TTAA	2 cut(s)	41, 287
Tru9I	TTAA	2 cut(s)	41, 287
TseI	GCWGC	2 cut(s)	23, 608
TspDTI	ATGAA	1 cut(s)	395
XapI	RAATTY	2 cut(s)	281, 621
XceI	RCATGY	2 cut(s)	424, 580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.