Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

8600369 .. 8604558

Gene Structure 4190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G049100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATTCAAAATAAAAGCGCCATGCCTGCTGGGTGTAGTTCTGTGAATTCCAGAGTATGTAAGCCATCAAATACTGGTGGTTTTGTCTTGTCGTGCATTCCTCGTTTTCAAACTGGGGTGGCTTCTCCATGCGTCAGTTCATGGAGAGCTCATCAGGACGCTATGCCACTTCTGCACCATTGTACTGTATCAAGCCCATTTTTAAGCGGGGATCAAGGTAGCCTGTTACGTACAATCCCCTTGTTGCCAAGCCGATGCAGAACTCGTATGGCCCCTCGCGCATCCAAGGATGTCCCATACAGTTTTCGGTTCCCTCCAATGACTAAGAAGCCAAAGTGGTGGTGGAGAACATTAGCATGCCTCCCCTATTTAATGCCCCTACATGAGACATGGATGTATGCTGAGACAGCCTATCATCTACACCCTTTCCTGGAAGACTTTGAATTCCTTACTTACCCATTCCTGGGGGCCATTGGGAGGTTGCCCAGCTGGTTCTTGATGGCATACTTTTTTGTTGCATATCTTGGAATAGTGAGGAGAAAGGAATGGCCGCATTTCTTCAGATTTCATGTGGTGATGGGCATGTTGTTGGAGATTGCCTTGCAGGTCATAGGGACTGTGAGCCGATGGATGCCACTTGCTGTCTACTGGGGTAAAGTTGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGTCCATACGCTGTGCTCTTGCTGGCATGTATGCAGATATCCCCTTCGTTTGTGATGCAGCATATATTCAAATTCCGTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

266

Amino Acids

30.36

Weight (kDa)

9.27

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	645
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	207, 551
AclWI	GGATC	1 cut(s)	219
AcoI	YGGCCR	1 cut(s)	548
AcsI	RAATTY	3 cut(s)	46, 443, 783
AcuI	CTGAAG	1 cut(s)	544
AfaI	GTAC	2 cut(s)	184, 232
AfiI	CCNNNNNNNGG	4 cut(s)	430, 463, 464, 477
AgsI	TTSAA	4 cut(s)	8, 110, 443, 782
AjnI	CCWGG	2 cut(s)	429, 462
AluBI	AGCT	2 cut(s)	149, 489
AluI	AGCT	2 cut(s)	149, 489
Alw21I	GWGCWC	2 cut(s)	151, 730
Alw26I	GTCTC	2 cut(s)	380, 398
AlwI	GGATC	1 cut(s)	219
AoxI	GGCC	3 cut(s)	270, 468, 548
ApeKI	GCWGC	1 cut(s)	770
ApoI	RAATTY	3 cut(s)	46, 443, 783
AspLEI	GCGC	2 cut(s)	20, 281
AspS9I	GGNCC	2 cut(s)	271, 468
AsuHPI	GGTGA	1 cut(s)	586
BanII	GRGCYC	1 cut(s)	151
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	151, 730
BbvI	GCAGC	1 cut(s)	782
BccI	CCATC	4 cut(s)	73, 493, 571, 621
BceAI	ACGGC	1 cut(s)	665
BciT130I	CCWGG	2 cut(s)	431, 464
BcoDI	GTCTC	2 cut(s)	380, 398
BfoI	RGCGCY	1 cut(s)	21
BfuAI	ACCTGC	1 cut(s)	595
BisI	GCNGC	2 cut(s)	551, 771
BlsI	GCNGC	2 cut(s)	552, 772
Bme1390I	CCNGG	2 cut(s)	431, 464
BmgT120I	GGNCC	2 cut(s)	271, 468
BmiI	GGNNCC	3 cut(s)	273, 311, 469
BmrFI	CCNGG	2 cut(s)	431, 464
BmrI	ACTGGG	2 cut(s)	123, 658
BmsI	GCATC	5 cut(s)	245, 290, 621, 654, 757
BmuI	ACTGGG	2 cut(s)	123, 658
BpiI	GAAGAC	1 cut(s)	441
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	285, 463
Bsc4I	CCNNNNNNNGG	4 cut(s)	430, 463, 464, 477
Bse1I	ACTGG	3 cut(s)	79, 118, 653
BseBI	CCWGG	2 cut(s)	431, 464
BseDI	CCNNGG	2 cut(s)	285, 463
BseGI	GGATG	5 cut(s)	281, 295, 399, 636, 669
BseLI	CCNNNNNNNGG	4 cut(s)	430, 463, 464, 477
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	3 cut(s)	79, 118, 653
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	782
BseYI	CCCAGC	2 cut(s)	29, 485
BsgI	GTGCAG	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	272, 470, 550
BsiHKAI	GWGCWC	2 cut(s)	151, 730
BslFI	GGGAC	2 cut(s)	278, 628
BslI	CCNNNNNNNGG	4 cut(s)	430, 463, 464, 477
BsmAI	GTCTC	2 cut(s)	380, 398
BsmFI	GGGAC	2 cut(s)	278, 628
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	3 cut(s)	272, 470, 550
Bsp1286I	GDGCHC	2 cut(s)	151, 730
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	2 cut(s)	207, 551
BspANI	GGCC	3 cut(s)	272, 470, 550
BspCNI	CTCAG	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	3 cut(s)	273, 311, 469
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	219
BsrI	ACTGG	3 cut(s)	79, 118, 653
BssECI	CCNNGG	2 cut(s)	285, 463
BssMI	GATC	1 cut(s)	211
BssT1I	CCWWGG	1 cut(s)	285
Bst2UI	CCWGG	2 cut(s)	431, 464
Bst4CI	ACNGT	4 cut(s)	187, 302, 619, 706
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	3 cut(s)	27, 358, 736
BstDEI	CTNAG	2 cut(s)	324, 402
BstF5I	GGATG	5 cut(s)	281, 295, 399, 636, 669
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 281
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	2 cut(s)	380, 398
BstMBI	GATC	1 cut(s)	211
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 172, 278, 407
BstNI	CCWGG	2 cut(s)	431, 464
BstNSI	RCATGY	3 cut(s)	360, 586, 742
BstSCI	CCNGG	2 cut(s)	429, 462
BstSNI	TACGTA	1 cut(s)	230
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	782
BstV2I	GAAGAC	1 cut(s)	441
BstXI	CCANNNNNNTGG	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	272, 470, 550
BtsCI	GGATG	5 cut(s)	281, 295, 399, 636, 669
BtsIMutI	CAGTG	1 cut(s)	711
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	3 cut(s)	27, 358, 736
CfoI	GCGC	2 cut(s)	20, 281
Cfr13I	GGNCC	2 cut(s)	271, 468
CseI	GACGC	2 cut(s)	121, 167
Csp6I	GTAC	2 cut(s)	183, 231
CviAII	CATG	9 cut(s)	22, 129, 141, 357, 383, 390, 569, 583, 739
CviQI	GTAC	2 cut(s)	183, 231
DdeI	CTNAG	2 cut(s)	324, 402
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	149
Eco105I	TACGTA	1 cut(s)	230
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	1 cut(s)	151
Eco32I	GATATC	1 cut(s)	751
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	544
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	2 cut(s)	46, 443
EcoRII	CCWGG	2 cut(s)	429, 462
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	9 cut(s)	25, 132, 144, 360, 386, 393, 572, 586, 742
FaqI	GGGAC	2 cut(s)	278, 628
FatI	CATG	9 cut(s)	21, 128, 140, 356, 382, 389, 568, 582, 738
FauI	CCCGC	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	645
Fnu4HI	GCNGC	2 cut(s)	551, 771
FokI	GGATG	5 cut(s)	268, 302, 406, 643, 676
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	551, 771
GlaI	GCGC	2 cut(s)	19, 280
GluI	GCNGC	2 cut(s)	551, 771
GsaI	CCCAGC	2 cut(s)	33, 489
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	3 cut(s)	272, 470, 550
HgaI	GACGC	2 cut(s)	121, 167
HhaI	GCGC	2 cut(s)	20, 281
Hin1II	CATG	9 cut(s)	25, 132, 144, 360, 386, 393, 572, 586, 742
Hin6I	GCGC	2 cut(s)	18, 279
HinP1I	GCGC	2 cut(s)	18, 279
HinfI	GANTC	2 cut(s)	4, 713
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	1 cut(s)	563
Hpy188III	TCNNGA	4 cut(s)	51, 155, 496, 673
Hpy8I	GTNNAC	1 cut(s)	646
HpyAV	CCTTC	1 cut(s)	766
HpyCH4III	ACNGT	4 cut(s)	187, 302, 619, 706
HpyCH4IV	ACGT	1 cut(s)	229
HpyCH4V	TGCA	9 cut(s)	96, 175, 258, 518, 604, 667, 686, 746, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 172, 278, 407
HpyF3I	CTNAG	2 cut(s)	324, 402
HpySE526I	ACGT	1 cut(s)	229
Hsp92II	CATG	9 cut(s)	25, 132, 144, 360, 386, 393, 572, 586, 742
HspAI	GCGC	2 cut(s)	18, 279
Kzo9I	GATC	1 cut(s)	211
Lsp1109I	GCAGC	1 cut(s)	782
LweI	GCATC	5 cut(s)	245, 290, 621, 654, 757
MaeII	ACGT	1 cut(s)	229
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	1 cut(s)	213
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	446, 550
MhlI	GDGCHC	2 cut(s)	151, 730
MluCI	AATT	3 cut(s)	46, 443, 783
MlyI	GAGTC	1 cut(s)	722
MmeI	TCCRAC	2 cut(s)	570, 690
MnlI	CCTC	6 cut(s)	111, 285, 324, 371, 471, 528
MseI	TTAA	2 cut(s)	203, 371
MslI	CAYNNNNRTG	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	489
MspR9I	CCNGG	2 cut(s)	431, 464
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	431, 464
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	4 cut(s)	26, 172, 278, 407
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	9 cut(s)	25, 132, 144, 360, 386, 393, 572, 586, 742
NlaIV	GGNNCC	3 cut(s)	273, 311, 469
NspI	RCATGY	3 cut(s)	360, 586, 742
PaeI	GCATGC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	4
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	2 cut(s)	552, 772
PleI	GAGTC	1 cut(s)	721
PpsI	GAGTC	1 cut(s)	721
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	429, 462
PspFI	CCCAGC	2 cut(s)	29, 485
PspGI	CCWGG	2 cut(s)	429, 462
PspN4I	GGNNCC	3 cut(s)	273, 311, 469
PspPI	GGNCC	2 cut(s)	271, 468
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	2 cut(s)	184, 232
RsaNI	GTAC	2 cut(s)	183, 231
RseI	CAYNNNNRTG	1 cut(s)	355
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	203, 371
SatI	GCNGC	2 cut(s)	551, 771
Sau3AI	GATC	1 cut(s)	211
Sau96I	GGNCC	2 cut(s)	271, 468
SchI	GAGTC	1 cut(s)	722
ScrFI	CCNGG	2 cut(s)	431, 464
SduI	GDGCHC	2 cut(s)	151, 730
SetI	ASST	7 cut(s)	151, 220, 232, 482, 491, 609, 699
SfaNI	GCATC	5 cut(s)	245, 290, 621, 654, 757
SmiMI	CAYNNNNRTG	1 cut(s)	355
SnaBI	TACGTA	1 cut(s)	230
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	46, 443, 783
SsiI	CCGC	2 cut(s)	207, 551
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	2 cut(s)	429, 462
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	4 cut(s)	187, 302, 619, 706
TaiI	ACGT	1 cut(s)	232
TasI	AATT	3 cut(s)	46, 443, 783
TatI	WGTACW	1 cut(s)	182
TauI	GCSGC	1 cut(s)	553
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	203, 371
Tru9I	TTAA	2 cut(s)	203, 371
TscAI	CASTG	1 cut(s)	711
TseI	GCWGC	1 cut(s)	770
TspDTI	ATGAA	2 cut(s)	129, 557
TspGWI	ACGGA	1 cut(s)	777
TspRI	CASTG	1 cut(s)	711
XapI	RAATTY	3 cut(s)	46, 443, 783
XceI	RCATGY	3 cut(s)	360, 586, 742
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
XmiI	GTMKAC	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.