Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

45979980 .. 45981472

Gene Structure 1493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0307800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGTTTGACAAAATGTCTGAGAAGCTCATCTCAAACAGAAGTGACTTGCAATTTGTACCTGAATCCTACATATTACCCCCAGGAACTAGACCAGGCAATACACAGGTCTCTGTATTGGAGGTCATTCCAGTCATTGATTTTCAGCTACTTGGTACCAACAGACCTCAGCTGATCAAGCAAATCATAGAGGCTTCCCAAGAATTTGGCTTCTTCCAGTTGATCAATCACGGGGTTGAAGACAATTTGCTGCATAAGGTATTGGACGTGGCCAACGAGTTCTTTGAGCAGCCTTATGAAGACAAGGCAAGCATGTATTCTGAAGATGTTGAGCAAAGTTGTAGACTATACACCAGCATTGATTATAACAAAGAGAAGGTGCATTTTTGGAGAGACAATTTGAGACACCCTTGTCATCCCTTAGAGCAACACATCCATTTCTGGCCTCAGAAACCGCCTCAATATCGGGAGGTGGTTGGAAGTTATTCAGTGGAGGCAAGGAAGCTGAGTATATTGCTTTTGGATCTTATTGGAGAAGGGTTGGGACTTGAATCTGGATTTTTCGGAGATGAACTTACCGAAGTCCAAGTGATGGGCATAAACTATTACCCACCTTGTCCAGACCCGAGCTTAACCTTAGGGTTACCAAAACATAGTGATGTTAACCTCATCACTCTTCTTCTCCAAGGAGAGGAAGTTCATGGTCTTCAGGTTTTGAAAGATGGGCAATGGTTGGCTGTTGAGCCTGTCCCTAATGCCTTTGTGGTTAATATAGGCCACACTTTACAGATCATCAGTAATGGGAAGCTAGGCAGCGCCGAGCACAGAGTCATGACAAATGAAAAGGTTTCCCGTACGACAGTGGGTAGCTTCATCCATCCTTCCAGCAATTACCTTGTTGAGCCTGCAAAAGCTCTACTAGATAGGGACTGCAGTAGCTCTCCACTCTTTAGAGCTTTCGTGTACAAGGACTTTGTTAGCACCTACGTAACAAACACTCATGAGGGAGTACCACCCCTTGAGCCTCACAAGATCCAGCCACGAAGTATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

349

Amino Acids

39.53

Weight (kDa)

5.36

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	42 - 149	5.5e-24	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	195 - 293	3e-32	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	363
AasI	GACNNNNNNGTC	1 cut(s)	408
Acc65I	GGTACC	1 cut(s)	152
AccB1I	GGYRCC	1 cut(s)	152
AccB7I	CCANNNNNTGG	1 cut(s)	589
AccI	GTMKAC	1 cut(s)	340
AciI	CCGC	1 cut(s)	452
AclWI	GGATC	2 cut(s)	528, 1024
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	200
AcuI	CTGAAG	2 cut(s)	339, 689
AfaI	GTAC	5 cut(s)	57, 154, 853, 962, 1008
AfiI	CCNNNNNNNGG	2 cut(s)	589, 688
AgsI	TTSAA	3 cut(s)	236, 548, 715
AhdI	GACNNNNNGTC	1 cut(s)	13
AjiI	CACGTC	1 cut(s)	265
AjnI	CCWGG	2 cut(s)	79, 91
AloI	GAACNNNNNNTCC	2 cut(s)	678, 710
Alw21I	GWGCWC	1 cut(s)	822
Alw26I	GTCTC	3 cut(s)	112, 384, 394
AlwI	GGATC	2 cut(s)	528, 1024
Ama87I	CYCGRG	1 cut(s)	622
AoxI	GGCC	3 cut(s)	267, 440, 772
ApeKI	GCWGC	3 cut(s)	247, 286, 810
ApoI	RAATTY	1 cut(s)	200
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	1 cut(s)	481
Asp718I	GGTACC	1 cut(s)	152
AspLEI	GCGC	1 cut(s)	815
AvaI	CYCGRG	1 cut(s)	622
AxyI	CCTNAGG	1 cut(s)	634
BalI	TGGCCA	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	152
BbsI	GAAGAC	3 cut(s)	243, 303, 695
Bbv12I	GWGCWC	1 cut(s)	822
BbvCI	CCTCAGC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	234, 298, 822
BccI	CCATC	3 cut(s)	583, 713, 882
BciT130I	CCWGG	2 cut(s)	81, 93
BclI	TGATCA	2 cut(s)	171, 219
BcoDI	GTCTC	3 cut(s)	112, 384, 394
BfaI	CTAG	3 cut(s)	87, 806, 917
BfmI	CTRYAG	1 cut(s)	928
BfoI	RGCGCY	1 cut(s)	816
BisI	GCNGC	3 cut(s)	248, 287, 811
BlsI	GCNGC	3 cut(s)	249, 288, 812
Bme1390I	CCNGG	2 cut(s)	81, 93
BmeRI	GACNNNNNGTC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	622
BmgBI	CACGTC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	2 cut(s)	81, 93
BpiI	GAAGAC	3 cut(s)	243, 303, 695
Bpu10I	CCTNAGC	1 cut(s)	165
BpuEI	CTTGAG	1 cut(s)	1037
BsaAI	YACGTR	1 cut(s)	985
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	79, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	678, 708
Bsc4I	CCNNNNNNNGG	2 cut(s)	589, 688
Bse1I	ACTGG	2 cut(s)	128, 214
Bse21I	CCTNAGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	81, 93
BseDI	CCNNGG	2 cut(s)	79, 682
BseGI	GGATG	4 cut(s)	412, 429, 870, 874
BseLI	CCNNNNNNNGG	2 cut(s)	589, 688
BseMI	GCAATG	1 cut(s)	731
BseMII	CTCAG	4 cut(s)	9, 179, 458, 494
BseNI	ACTGG	2 cut(s)	128, 214
BseXI	GCAGC	3 cut(s)	234, 298, 822
BshFI	GGCC	3 cut(s)	269, 442, 774
BshNI	GGYRCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	822
BsiHKCI	CYCGRG	1 cut(s)	622
BsiWI	CGTACG	1 cut(s)	851
BslFI	GGGAC	3 cut(s)	555, 731, 938
BslI	CCNNNNNNNGG	2 cut(s)	589, 688
BsmAI	GTCTC	3 cut(s)	112, 384, 394
BsmFI	GGGAC	3 cut(s)	555, 731, 938
BsnI	GGCC	3 cut(s)	269, 442, 774
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	1 cut(s)	622
Bsp1286I	GDGCHC	1 cut(s)	822
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	5 cut(s)	171, 219, 520, 786, 1029
BspACI	CCGC	1 cut(s)	452
BspANI	GGCC	3 cut(s)	269, 442, 774
BspCNI	CTCAG	4 cut(s)	10, 178, 457, 495
BspHI	TCATGA	2 cut(s)	828, 997
BspLI	GGNNCC	1 cut(s)	154
BspMAI	CTGCAG	1 cut(s)	932
BspPI	GGATC	2 cut(s)	528, 1024
BspT107I	GGYRCC	1 cut(s)	152
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	731
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	128, 214
BssECI	CCNNGG	2 cut(s)	79, 682
BssMI	GATC	5 cut(s)	171, 219, 520, 786, 1029
BssT1I	CCWWGG	1 cut(s)	682
Bst2UI	CCWGG	2 cut(s)	81, 93
Bst4CI	ACNGT	1 cut(s)	859
Bst6I	CTCTTC	1 cut(s)	678
BstAUI	TGTACA	1 cut(s)	960
BstBAI	YACGTR	1 cut(s)	985
BstC8I	GCNNGC	2 cut(s)	307, 903
BstDEI	CTNAG	6 cut(s)	18, 165, 418, 444, 503, 634
BstEII	GGTNACC	1 cut(s)	639
BstF5I	GGATG	4 cut(s)	412, 429, 870, 874
BstH2I	RGCGCY	1 cut(s)	816
BstHHI	GCGC	1 cut(s)	815
BstKTI	GATC	5 cut(s)	174, 222, 523, 789, 1032
BstMAI	GTCTC	3 cut(s)	112, 384, 394
BstMBI	GATC	5 cut(s)	171, 219, 520, 786, 1029
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	2 cut(s)	81, 93
BstNSI	RCATGY	1 cut(s)	313
BstPI	GGTNACC	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	79, 91
BstSFI	CTRYAG	1 cut(s)	928
BstSNI	TACGTA	1 cut(s)	985
BstV1I	GCAGC	3 cut(s)	234, 298, 822
BstV2I	GAAGAC	3 cut(s)	243, 303, 695
BstX2I	RGATCY	2 cut(s)	520, 1029
BstXI	CCANNNNNNTGG	1 cut(s)	203
BstYI	RGATCY	2 cut(s)	520, 1029
Bsu36I	CCTNAGG	1 cut(s)	634
BsuRI	GGCC	3 cut(s)	269, 442, 774
BtrI	CACGTC	1 cut(s)	265
BtsCI	GGATG	4 cut(s)	412, 429, 870, 874
BtsIMutI	CAGTG	2 cut(s)	492, 864
Cac8I	GCNNGC	2 cut(s)	307, 903
CciI	TCATGA	2 cut(s)	828, 997
CfoI	GCGC	1 cut(s)	815
Csp6I	GTAC	5 cut(s)	56, 153, 852, 961, 1007
CviAII	CATG	4 cut(s)	310, 698, 829, 998
CviQI	GTAC	5 cut(s)	56, 153, 852, 961, 1007
DdeI	CTNAG	6 cut(s)	18, 165, 418, 444, 503, 634
DpnI	GATC	5 cut(s)	173, 221, 522, 788, 1031
DpnII	GATC	5 cut(s)	171, 219, 520, 786, 1029
DrdI	GACNNNNNNGTC	1 cut(s)	408
DriI	GACNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	408
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	678
Eam1105I	GACNNNNNGTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	678
Eco105I	TACGTA	1 cut(s)	985
Eco130I	CCWWGG	1 cut(s)	682
Eco31I	GGTCTC	1 cut(s)	112
Eco57I	CTGAAG	2 cut(s)	339, 689
Eco81I	CCTNAGG	1 cut(s)	634
Eco88I	CYCGRG	1 cut(s)	622
Eco91I	GGTNACC	1 cut(s)	639
EcoO65I	GGTNACC	1 cut(s)	639
EcoRII	CCWGG	2 cut(s)	79, 91
EcoT14I	CCWWGG	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	682
FaeI	CATG	4 cut(s)	313, 701, 832, 1001
FaqI	GGGAC	3 cut(s)	555, 731, 938
FatI	CATG	4 cut(s)	309, 697, 828, 997
FbaI	TGATCA	2 cut(s)	171, 219
FblI	GTMKAC	1 cut(s)	340
Fnu4HI	GCNGC	3 cut(s)	248, 287, 811
FokI	GGATG	4 cut(s)	399, 416, 857, 861
Fsp4HI	GCNGC	3 cut(s)	248, 287, 811
FspBI	CTAG	3 cut(s)	87, 806, 917
GlaI	GCGC	1 cut(s)	814
GluI	GCNGC	3 cut(s)	248, 287, 811
HaeII	RGCGCY	1 cut(s)	816
HaeIII	GGCC	3 cut(s)	269, 442, 774
HhaI	GCGC	1 cut(s)	815
Hin1II	CATG	4 cut(s)	313, 701, 832, 1001
Hin6I	GCGC	1 cut(s)	813
HinP1I	GCGC	1 cut(s)	813
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HinfI	GANTC	3 cut(s)	62, 548, 825
HpaI	GTTAAC	1 cut(s)	661
Hpy166II	GTNNAC	3 cut(s)	341, 661, 961
Hpy188I	TCNGA	4 cut(s)	19, 319, 447, 563
Hpy188III	TCNNGA	5 cut(s)	464, 552, 617, 829, 998
Hpy8I	GTNNAC	3 cut(s)	341, 661, 961
HpyAV	CCTTC	3 cut(s)	367, 527, 888
HpyCH4III	ACNGT	1 cut(s)	859
HpyCH4IV	ACGT	2 cut(s)	264, 984
HpyCH4V	TGCA	5 cut(s)	49, 250, 379, 905, 930
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
HpyF3I	CTNAG	6 cut(s)	18, 165, 418, 444, 503, 634
HpySE526I	ACGT	2 cut(s)	264, 984
Hsp92II	CATG	4 cut(s)	313, 701, 832, 1001
HspAI	GCGC	1 cut(s)	813
KpnI	GGTACC	1 cut(s)	156
Ksp22I	TGATCA	2 cut(s)	171, 219
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	171, 219, 520, 786, 1029
Lsp1109I	GCAGC	3 cut(s)	234, 298, 822
MaeI	CTAG	3 cut(s)	87, 806, 917
MaeII	ACGT	2 cut(s)	264, 984
MaeIII	GTNAC	3 cut(s)	41, 639, 985
MalI	GATC	5 cut(s)	173, 221, 522, 788, 1031
MboI	GATC	5 cut(s)	171, 219, 520, 786, 1029
MboII	GAAGA	7 cut(s)	202, 248, 308, 332, 665, 668, 695
MflI	RGATCY	2 cut(s)	520, 1029
MhlI	GDGCHC	1 cut(s)	822
MlsI	TGGCCA	1 cut(s)	269
MluCI	AATT	5 cut(s)	50, 200, 241, 394, 886
MluNI	TGGCCA	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	834
MmeI	TCCRAC	1 cut(s)	454
Mox20I	TGGCCA	1 cut(s)	269
MroXI	GAANNNNTTC	1 cut(s)	481
MscI	TGGCCA	1 cut(s)	269
MseI	TTAA	3 cut(s)	629, 660, 765
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	169
MspR9I	CCNGG	2 cut(s)	81, 93
MvaI	CCWGG	2 cut(s)	81, 93
MwoI	GCNNNNNNNGC	1 cut(s)	175
NdeII	GATC	5 cut(s)	171, 219, 520, 786, 1029
NlaIII	CATG	4 cut(s)	313, 701, 832, 1001
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	841
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	313
PagI	TCATGA	2 cut(s)	828, 997
PcsI	WCGNNNNNNNCGW	1 cut(s)	270
PdmI	GAANNNNTTC	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	62, 548
Pfl23II	CGTACG	1 cut(s)	851
PflMI	CCANNNNNTGG	1 cut(s)	589
PkrI	GCNGC	3 cut(s)	249, 288, 812
PleI	GAGTC	1 cut(s)	833
PpsI	GAGTC	1 cut(s)	833
Ppu21I	YACGTR	1 cut(s)	985
PsiI	TTATAA	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	79, 91
PspEI	GGTNACC	1 cut(s)	639
PspGI	CCWGG	2 cut(s)	79, 91
PspLI	CGTACG	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	932
PsuI	RGATCY	2 cut(s)	520, 1029
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	5 cut(s)	57, 154, 853, 962, 1008
RsaNI	GTAC	5 cut(s)	56, 153, 852, 961, 1007
RseI	CAYNNNNRTG	1 cut(s)	654
SaqAI	TTAA	3 cut(s)	629, 660, 765
SatI	GCNGC	3 cut(s)	248, 287, 811
Sau3AI	GATC	5 cut(s)	171, 219, 520, 786, 1029
SchI	GAGTC	1 cut(s)	834
ScrFI	CCNGG	2 cut(s)	81, 93
SduI	GDGCHC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	1016
SmoI	CTYRAG	1 cut(s)	1016
SnaBI	TACGTA	1 cut(s)	985
Sse9I	AATT	5 cut(s)	50, 200, 241, 394, 886
SsiI	CCGC	1 cut(s)	452
SspMI	CTAG	3 cut(s)	87, 806, 917
StyD4I	CCNGG	2 cut(s)	79, 91
StyI	CCWWGG	1 cut(s)	682
TaaI	ACNGT	1 cut(s)	859
TaiI	ACGT	2 cut(s)	267, 987
TasI	AATT	5 cut(s)	50, 200, 241, 394, 886
TatI	WGTACW	1 cut(s)	960
TfiI	GAWTC	2 cut(s)	62, 548
Tru1I	TTAA	3 cut(s)	629, 660, 765
Tru9I	TTAA	3 cut(s)	629, 660, 765
TscAI	CASTG	2 cut(s)	492, 864
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	3 cut(s)	247, 286, 810
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	5 cut(s)	309, 582, 686, 852, 859
TspRI	CASTG	2 cut(s)	492, 864
Van91I	CCANNNNNTGG	1 cut(s)	589
XapI	RAATTY	1 cut(s)	200
XceI	RCATGY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	340
XmnI	GAANNNNTTC	1 cut(s)	481
XspI	CTAG	3 cut(s)	87, 806, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.