Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

1068329 .. 1069249

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01870.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCCCGCCGGGTGCAGTTCTGTGAATTTCGGGGTGTCATGTGCTCCATGTTTTCGAACTAAGGCGGCTGCTTTTCCATGCGTCAGTTCGTGGATGGCTCGGCAGGAAGTTATGCCACCTCTGAACCCTTGTGCTGCATCAAGCCCATTTTTAAGTGGGGATCACGGTAGCTTGTTACGTACAATCCCCGCATTGCAAAGAGGATGCAAATCTCGTATGGCCCCTCAAGCATCTAAGGATGTTCCATACAGTTTTCGGTTCCCTCCCATGACTAAGAAGCCAAAGTGGTGGTGGAGGACGTTAGCCTGTCTCCCCTATTTGATGCCCCTACACGAGACATGGATGTATGCTGAGACAGCGTATCATCTACACCCTTTCCTGGAGGACTTTGAATTCTTAACATACCCTTTCCTCGGAGCCATTGGGAGGTTGCCCAGCTGGTTCTTGATGGCATACTTCTTCGTTGCATATCTGGGAGTTGTGAGGAGAAAGGAATGGCCTCATTTCTTCAGATTTCATGTGGTGATGGGCTTGCTGTTGGAAATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCGCTTGCTGTCTACTGGGGTAAGGTTGGGATGCACTTTTGGACGGCCATTGCATTTGCTTACCTTTTCACCGTGTTGGAAGCGATACGTTGTGCTCTTGCTGGCATGTACGCTGATATCCCCTTCGTCTGCGATGCTGCGTATATTCAAATTCCATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

249

Amino Acids

28.31

Weight (kDa)

8.96

Isoelectric Point (pI)

53.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	544
AccI	GTMKAC	1 cut(s)	594
AciI	CCGC	4 cut(s)	6, 65, 189, 584
AclWI	GGATC	1 cut(s)	168
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	3 cut(s)	25, 392, 732
AcuI	CTGAAG	1 cut(s)	493
AfaI	GTAC	2 cut(s)	181, 692
AfiI	CCNNNNNNNGG	3 cut(s)	379, 413, 426
AgsI	TTSAA	2 cut(s)	392, 731
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	171, 438
AluI	AGCT	2 cut(s)	171, 438
Alw21I	GWGCWC	2 cut(s)	46, 679
Alw26I	GTCTC	3 cut(s)	314, 329, 347
AlwI	GGATC	1 cut(s)	168
AoxI	GGCC	3 cut(s)	219, 497, 627
ApeKI	GCWGC	3 cut(s)	68, 134, 719
ApoI	RAATTY	3 cut(s)	25, 392, 732
AspS9I	GGNCC	1 cut(s)	220
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	535, 568, 643
AsuII	TTCGAA	1 cut(s)	55
BauI	CACGAG	1 cut(s)	332
Bbv12I	GWGCWC	2 cut(s)	46, 679
BbvI	GCAGC	3 cut(s)	55, 121, 706
BccI	CCATC	3 cut(s)	88, 442, 520
BceAI	ACGGC	2 cut(s)	558, 642
BciT130I	CCWGG	1 cut(s)	380
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	314, 329, 347
BfuAI	ACCTGC	1 cut(s)	544
BisI	GCNGC	5 cut(s)	66, 69, 135, 584, 720
BlsI	GCNGC	5 cut(s)	67, 70, 136, 585, 721
Bme1390I	CCNGG	2 cut(s)	10, 380
BmgT120I	GGNCC	1 cut(s)	220
BmiI	GGNNCC	3 cut(s)	222, 260, 418
BmrFI	CCNGG	2 cut(s)	10, 380
BmrI	ACTGGG	1 cut(s)	607
BmsI	GCATC	7 cut(s)	146, 194, 239, 312, 570, 603, 706
BmuI	ACTGGG	1 cut(s)	607
BpmI	CTGGAG	1 cut(s)	401
Bpu14I	TTCGAA	1 cut(s)	55
BpuEI	CTTGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	10
BsaAI	YACGTR	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	208
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	379, 413, 426
Bse1I	ACTGG	1 cut(s)	602
Bse3DI	GCAATG	2 cut(s)	191, 630
Bse8I	GATNNNNATC	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	412
BseGI	GGATG	6 cut(s)	99, 209, 244, 348, 585, 618
BseJI	GATNNNNATC	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	379, 413, 426
BseMI	GCAATG	2 cut(s)	191, 630
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	602
BseRI	GAGGAG	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	55, 121, 706
BseYI	CCCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	3 cut(s)	221, 499, 629
BsiHKAI	GWGCWC	2 cut(s)	46, 679
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	577
BslI	CCNNNNNNNGG	3 cut(s)	379, 413, 426
BsmAI	GTCTC	3 cut(s)	314, 329, 347
BsmFI	GGGAC	1 cut(s)	577
BsnI	GGCC	3 cut(s)	221, 499, 629
Bsp119I	TTCGAA	1 cut(s)	55
Bsp1286I	GDGCHC	2 cut(s)	46, 679
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	4 cut(s)	6, 65, 189, 584
BspANI	GGCC	3 cut(s)	221, 499, 629
BspCNI	CTCAG	1 cut(s)	343
BspLI	GGNNCC	3 cut(s)	222, 260, 418
BspMI	ACCTGC	1 cut(s)	544
BspPI	GGATC	1 cut(s)	168
BspT104I	TTCGAA	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	191, 630
BsrI	ACTGG	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	1 cut(s)	160
BssSI	CACGAG	1 cut(s)	332
Bst2BI	CACGAG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	4 cut(s)	167, 251, 568, 655
BstBAI	YACGTR	1 cut(s)	179
BstBI	TTCGAA	1 cut(s)	55
BstC8I	GCNNGC	4 cut(s)	6, 533, 588, 685
BstDEI	CTNAG	4 cut(s)	60, 234, 273, 351
BstF5I	GGATG	6 cut(s)	99, 209, 244, 348, 585, 618
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	3 cut(s)	314, 329, 347
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 356
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	691
BstSCI	CCNGG	2 cut(s)	8, 378
BstSNI	TACGTA	1 cut(s)	179
BstV1I	GCAGC	3 cut(s)	55, 121, 706
BstXI	CCANNNNNNTGG	1 cut(s)	288
BsuRI	GGCC	3 cut(s)	221, 499, 629
BtgZI	GCGATG	1 cut(s)	729
BtsCI	GGATG	6 cut(s)	99, 209, 244, 348, 585, 618
BveI	ACCTGC	1 cut(s)	544
Cac8I	GCNNGC	4 cut(s)	6, 533, 588, 685
Cfr13I	GGNCC	1 cut(s)	220
CseI	GACGC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	180, 691
CviAII	CATG	7 cut(s)	39, 48, 78, 268, 339, 518, 688
CviQI	GTAC	2 cut(s)	180, 691
DdeI	CTNAG	4 cut(s)	60, 234, 273, 351
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	627
Eco105I	TACGTA	1 cut(s)	179
Eco32I	GATATC	1 cut(s)	700
Eco57I	CTGAAG	1 cut(s)	493
EcoRI	GAATTC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	700
FaeI	CATG	7 cut(s)	42, 51, 81, 271, 342, 521, 691
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	7 cut(s)	38, 47, 77, 267, 338, 517, 687
FauI	CCCGC	2 cut(s)	13, 196
FauNDI	CATATG	1 cut(s)	739
FblI	GTMKAC	1 cut(s)	594
Fnu4HI	GCNGC	5 cut(s)	66, 69, 135, 584, 720
FokI	GGATG	6 cut(s)	106, 216, 251, 355, 592, 625
Fsp4HI	GCNGC	5 cut(s)	66, 69, 135, 584, 720
GluI	GCNGC	5 cut(s)	66, 69, 135, 584, 720
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	1 cut(s)	401
HaeIII	GGCC	3 cut(s)	221, 499, 629
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	70
Hin1II	CATG	7 cut(s)	42, 51, 81, 271, 342, 521, 691
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	535, 568, 643
Hpy166II	GTNNAC	1 cut(s)	595
Hpy188I	TCNGA	3 cut(s)	123, 416, 512
Hpy188III	TCNNGA	1 cut(s)	445
Hpy8I	GTNNAC	1 cut(s)	595
HpyAV	CCTTC	1 cut(s)	715
HpyCH4III	ACNGT	4 cut(s)	167, 251, 568, 655
HpyCH4IV	ACGT	3 cut(s)	178, 299, 670
HpyCH4V	TGCA	8 cut(s)	15, 137, 196, 207, 467, 553, 616, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 356
HpyF3I	CTNAG	4 cut(s)	60, 234, 273, 351
HpySE526I	ACGT	3 cut(s)	178, 299, 670
Hsp92II	CATG	7 cut(s)	42, 51, 81, 271, 342, 521, 691
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	2 cut(s)	49, 416
Lsp1109I	GCAGC	3 cut(s)	55, 121, 706
LweI	GCATC	7 cut(s)	146, 194, 239, 312, 570, 603, 706
MaeII	ACGT	3 cut(s)	178, 299, 670
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	2 cut(s)	451, 499
MhlI	GDGCHC	2 cut(s)	46, 679
MluCI	AATT	4 cut(s)	25, 392, 543, 732
MmeI	TCCRAC	3 cut(s)	519, 557, 639
MseI	TTAA	2 cut(s)	152, 398
MspA1I	CMGCKG	1 cut(s)	438
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	10, 380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	227, 356
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	739
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	7 cut(s)	42, 51, 81, 271, 342, 521, 691
NlaIV	GGNNCC	3 cut(s)	222, 260, 418
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	55
PaqCI	CACCTGC	1 cut(s)	544
PfoI	TCCNGGA	1 cut(s)	378
PkrI	GCNGC	5 cut(s)	67, 70, 136, 585, 721
Ppu21I	YACGTR	1 cut(s)	179
Psp6I	CCWGG	1 cut(s)	378
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	3 cut(s)	222, 260, 418
PspPI	GGNCC	1 cut(s)	220
PvuII	CAGCTG	1 cut(s)	438
RsaI	GTAC	2 cut(s)	181, 692
RsaNI	GTAC	2 cut(s)	180, 691
SaqAI	TTAA	2 cut(s)	152, 398
SatI	GCNGC	5 cut(s)	66, 69, 135, 584, 720
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	10, 380
SduI	GDGCHC	2 cut(s)	46, 679
SfaNI	GCATC	7 cut(s)	146, 194, 239, 312, 570, 603, 706
SfuI	TTCGAA	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	225
SmoI	CTYRAG	1 cut(s)	225
SnaBI	TACGTA	1 cut(s)	179
Sse9I	AATT	4 cut(s)	25, 392, 543, 732
SsiI	CCGC	4 cut(s)	6, 65, 189, 584
StyD4I	CCNGG	2 cut(s)	8, 378
TaaI	ACNGT	4 cut(s)	167, 251, 568, 655
TaiI	ACGT	3 cut(s)	181, 302, 673
TaqI	TCGA	1 cut(s)	55
TasI	AATT	4 cut(s)	25, 392, 543, 732
TauI	GCSGC	2 cut(s)	68, 586
Tru1I	TTAA	2 cut(s)	152, 398
Tru9I	TTAA	2 cut(s)	152, 398
TseI	GCWGC	3 cut(s)	68, 134, 719
TspDTI	ATGAA	1 cut(s)	506
XapI	RAATTY	3 cut(s)	25, 392, 732
XceI	RCATGY	1 cut(s)	691
XcmI	CCANNNNNNNNNTGG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.