Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Reverse (-)

61400874 .. 61402979

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG433700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGTTGGTTGTAGCTATGCCGCTTCTGCACCCCCGTGCTGCGTCGAGCCCATTTTTCAGTGGGGATCAAGGCAGCCTTTTACGCACAATCCCCACACTGCAAAGGCGAGGCAGATCCAGTATGGCCCCTCAAGCATCTAAGGATGTCCCGTACAGTTTTCGGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGAGGACATTGGCATGTCTCCCCTACTTAATGCCCCTACACGAGACATGGATGTATGCTGAGACAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAGAAAGGAGTGGCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATGCTACTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTATTTACTGGGGTAAATTCGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGTGCATACGCTGTGCTCTTGCTGGTATGTACGCTGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

216

Amino Acids

25.21

Weight (kDa)

9.06

Isoelectric Point (pI)

56.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	37 - 209	8.1e-73	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	279, 448
Acc36I	ACCTGC	2 cut(s)	279, 448
AccB1I	GGYRCC	1 cut(s)	320
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	1 cut(s)	20
AclWI	GGATC	2 cut(s)	72, 108
AcsI	RAATTY	2 cut(s)	509, 636
AcuI	CTGAAG	1 cut(s)	397
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	2 cut(s)	152, 596
AfiI	CCNNNNNNNGG	2 cut(s)	283, 317
AgsI	TTSAA	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	282
AleI	CACNNNNGTG	1 cut(s)	33
AluBI	AGCT	2 cut(s)	14, 342
AluI	AGCT	2 cut(s)	14, 342
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	3 cut(s)	218, 233, 251
AlwI	GGATC	2 cut(s)	72, 108
AoxI	GGCC	2 cut(s)	123, 401
ApeKI	GCWGC	3 cut(s)	38, 72, 623
ApoI	RAATTY	2 cut(s)	509, 636
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	1 cut(s)	124
AsuHPI	GGTGA	3 cut(s)	260, 439, 472
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	50
BauI	CACGAG	1 cut(s)	236
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	3 cut(s)	25, 84, 610
BccI	CCATC	2 cut(s)	346, 424
BceAI	ACGGC	2 cut(s)	462, 518
BciT130I	CCWGG	1 cut(s)	284
BcoDI	GTCTC	3 cut(s)	218, 233, 251
BfoI	RGCGCY	1 cut(s)	324
BfuAI	ACCTGC	2 cut(s)	279, 448
BisI	GCNGC	4 cut(s)	20, 39, 73, 624
BlsI	GCNGC	4 cut(s)	21, 40, 74, 625
Bme1390I	CCNGG	1 cut(s)	284
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	126, 164, 322
BmrFI	CCNGG	1 cut(s)	284
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	4 cut(s)	143, 474, 507, 610
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	114
BsaHI	GRCGYC	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 317
Bse1I	ACTGG	3 cut(s)	117, 447, 506
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	4 cut(s)	148, 252, 489, 522
BseLI	CCNNNNNNNGG	2 cut(s)	283, 317
BseMII	CTCAG	1 cut(s)	246
BseNI	ACTGG	3 cut(s)	117, 447, 506
BseRI	GAGGAG	1 cut(s)	403
BseXI	GCAGC	3 cut(s)	25, 84, 610
BseYI	CCCAGC	1 cut(s)	338
BsgI	GTGCAG	2 cut(s)	11, 257
BshFI	GGCC	2 cut(s)	125, 403
BshNI	GGYRCC	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	583
BslFI	GGGAC	2 cut(s)	131, 481
BslI	CCNNNNNNNGG	2 cut(s)	283, 317
BsmAI	GTCTC	3 cut(s)	218, 233, 251
BsmFI	GGGAC	2 cut(s)	131, 481
BsnI	GGCC	2 cut(s)	125, 403
Bsp1286I	GDGCHC	2 cut(s)	50, 583
Bsp143I	GATC	2 cut(s)	64, 113
BspACI	CCGC	1 cut(s)	20
BspANI	GGCC	2 cut(s)	125, 403
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	3 cut(s)	126, 164, 322
BspMI	ACCTGC	2 cut(s)	279, 448
BspPI	GGATC	2 cut(s)	72, 108
BspT107I	GGYRCC	1 cut(s)	320
BsrI	ACTGG	3 cut(s)	117, 447, 506
BssMI	GATC	2 cut(s)	64, 113
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	236
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	155, 472, 559
BstACI	GRCGYC	1 cut(s)	321
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	2 cut(s)	138, 255
BstF5I	GGATG	4 cut(s)	148, 252, 489, 522
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	2 cut(s)	67, 116
BstMAI	GTCTC	3 cut(s)	218, 233, 251
BstMBI	GATC	2 cut(s)	64, 113
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 81, 131, 260
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	2 cut(s)	213, 439
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	3 cut(s)	25, 84, 610
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	113
BsuRI	GGCC	2 cut(s)	125, 403
BtsCI	GGATG	4 cut(s)	148, 252, 489, 522
BtsI	GCAGTG	1 cut(s)	95
BtsIMutI	CAGTG	3 cut(s)	64, 95, 564
BveI	ACCTGC	2 cut(s)	279, 448
Cac8I	GCNNGC	1 cut(s)	437
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	151, 595
CviAII	CATG	5 cut(s)	172, 210, 243, 422, 436
CviQI	GTAC	2 cut(s)	151, 595
DdeI	CTNAG	2 cut(s)	138, 255
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	2 cut(s)	66, 115
DpnII	GATC	2 cut(s)	64, 113
Eco24I	GRGCYC	1 cut(s)	50
Eco32I	GATATC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	604
EcoT38I	GRGCYC	1 cut(s)	50
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
FaeI	CATG	5 cut(s)	175, 213, 246, 425, 439
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	2 cut(s)	131, 481
FatI	CATG	5 cut(s)	171, 209, 242, 421, 435
Fnu4HI	GCNGC	4 cut(s)	20, 39, 73, 624
FokI	GGATG	4 cut(s)	155, 259, 496, 529
FriOI	GRGCYC	1 cut(s)	50
Fsp4HI	GCNGC	4 cut(s)	20, 39, 73, 624
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	4 cut(s)	20, 39, 73, 624
GsaI	CCCAGC	1 cut(s)	342
GsuI	CTGGAG	1 cut(s)	464
HaeII	RGCGCY	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	125, 403
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	323
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	5 cut(s)	175, 213, 246, 425, 439
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HphI	GGTGA	3 cut(s)	260, 439, 472
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	3 cut(s)	349, 514, 526
Hpy99I	CGWCG	1 cut(s)	46
HpyCH4III	ACNGT	3 cut(s)	155, 472, 559
HpyCH4V	TGCA	9 cut(s)	28, 100, 274, 371, 457, 520, 539, 570, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 81, 131, 260
HpyF3I	CTNAG	2 cut(s)	138, 255
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	5 cut(s)	175, 213, 246, 425, 439
HspAI	GCGC	1 cut(s)	321
KasI	GGCGCC	1 cut(s)	320
Kzo9I	GATC	2 cut(s)	64, 113
Lsp1109I	GCAGC	3 cut(s)	25, 84, 610
LweI	GCATC	4 cut(s)	143, 474, 507, 610
MalI	GATC	2 cut(s)	66, 115
MboI	GATC	2 cut(s)	64, 113
MboII	GAAGA	4 cut(s)	190, 292, 299, 403
MflI	RGATCY	1 cut(s)	113
MhlI	GDGCHC	2 cut(s)	50, 583
MluCI	AATT	3 cut(s)	381, 509, 636
Mly113I	GGCGCC	1 cut(s)	321
MmeI	TCCRAC	2 cut(s)	461, 543
MnlI	CCTC	6 cut(s)	101, 138, 177, 192, 381, 414
MseI	TTAA	1 cut(s)	224
MslI	CAYNNNNRTG	2 cut(s)	33, 208
MspA1I	CMGCKG	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	4 cut(s)	25, 81, 131, 260
NarI	GGCGCC	1 cut(s)	321
NdeII	GATC	2 cut(s)	64, 113
NlaIII	CATG	5 cut(s)	175, 213, 246, 425, 439
NlaIV	GGNNCC	3 cut(s)	126, 164, 322
NspI	RCATGY	2 cut(s)	213, 439
OliI	CACNNNNGTG	1 cut(s)	33
PaeI	GCATGC	1 cut(s)	439
PaqCI	CACCTGC	2 cut(s)	279, 448
PflMI	CCANNNNNTGG	1 cut(s)	317
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	21, 40, 74, 625
PluTI	GGCGCC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	126, 164, 322
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	342
RsaI	GTAC	2 cut(s)	152, 596
RsaNI	GTAC	2 cut(s)	151, 595
RseI	CAYNNNNRTG	2 cut(s)	33, 208
SaqAI	TTAA	1 cut(s)	224
SatI	GCNGC	4 cut(s)	20, 39, 73, 624
Sau3AI	GATC	2 cut(s)	64, 113
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	50, 583
SetI	ASST	5 cut(s)	16, 273, 344, 462, 552
SfaNI	GCATC	4 cut(s)	143, 474, 507, 610
SfoI	GGCGCC	1 cut(s)	322
SmiMI	CAYNNNNRTG	2 cut(s)	33, 208
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
SphI	GCATGC	1 cut(s)	439
Sse9I	AATT	3 cut(s)	381, 509, 636
SsiI	CCGC	1 cut(s)	20
SspDI	GGCGCC	1 cut(s)	320
StyD4I	CCNGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	155, 472, 559
TaqI	TCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	381, 509, 636
TauI	GCSGC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	224
Tru9I	TTAA	1 cut(s)	224
TscAI	CASTG	3 cut(s)	64, 102, 564
TseI	GCWGC	3 cut(s)	38, 72, 623
TspDTI	ATGAA	2 cut(s)	191, 410
TspRI	CASTG	3 cut(s)	64, 102, 564
Van91I	CCANNNNNTGG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	509, 636
XceI	RCATGY	2 cut(s)	213, 439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.