Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

34502578 .. 34503275

Gene Structure 698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGATATGCAGTAGCCCTGTGTTGTCATGCATTCCTCGATTTCAAAGTAAGAGTTCTTTTCAGTGCATCAGTTCATGGAGTTCTCTTCAGAAGGCTATGCCGCTTCTGCACCTTTGTGCTACATTGAGCCCATTTTCCAGTGGGGATCATGGCAGCCTTTACGCACAATCCCCACACTACAAAGGCGAGGCAGATCTATTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGTGGACATTAGCATGTCTCCCCTACTTAATGCTCCCACACGAGACATGGATGCATGCTGAGACTTTAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCCCATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATAGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAAAAAGGAGTGCCCTCACTTTTTCAGATTTTATGTGGTGATGGGCATGCTGCTGGTGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTTCTATTTACTGGGGTAAATTCGGGATGCACTTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGCATTGGAGACTTGGACTCTTGGAGTGCATACACTGCTCTTTCGTATGTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

217

Amino Acids

25.06

Weight (kDa)

8.06

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	64 - 189	8.8e-40	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	318, 487
Acc36I	ACCTGC	2 cut(s)	318, 487
AccB1I	GGYRCC	1 cut(s)	359
AccB7I	CCANNNNNTGG	1 cut(s)	356
AciI	CCGC	1 cut(s)	101
AclWI	GGATC	1 cut(s)	153
AcsI	RAATTY	1 cut(s)	548
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	322, 356
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	321
AleI	CACNNNNGTG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw26I	GTCTC	4 cut(s)	254, 269, 287, 600
AlwI	GGATC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	153, 478
ApoI	RAATTY	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	362
AsuHPI	GGTGA	4 cut(s)	299, 478, 496, 511
BaeGI	GKGCMC	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	131
BauI	CACGAG	1 cut(s)	272
BbsI	GAAGAC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	165, 465
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	2 cut(s)	501, 558
BciT130I	CCWGG	1 cut(s)	323
BcoDI	GTCTC	4 cut(s)	254, 269, 287, 600
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	2 cut(s)	318, 487
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	3 cut(s)	101, 154, 479
BlsI	GCNGC	3 cut(s)	102, 155, 480
Bme1390I	CCNGG	1 cut(s)	323
BmiI	GGNNCC	1 cut(s)	361
BmrFI	CCNGG	1 cut(s)	323
BmrI	ACTGGG	1 cut(s)	550
BmsI	GCATC	4 cut(s)	75, 273, 513, 546
BmuI	ACTGGG	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	333
BsaHI	GRCGYC	1 cut(s)	360
Bsc4I	CCNNNNNNNGG	2 cut(s)	322, 356
Bse1I	ACTGG	2 cut(s)	138, 545
BseBI	CCWGG	1 cut(s)	323
BseGI	GGATG	3 cut(s)	288, 528, 561
BseLI	CCNNNNNNNGG	2 cut(s)	322, 356
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	2 cut(s)	138, 545
BseSI	GKGCMC	1 cut(s)	443
BseXI	GCAGC	2 cut(s)	165, 465
BseYI	CCCAGC	1 cut(s)	377
BsgI	GTGCAG	2 cut(s)	92, 296
BshNI	GGYRCC	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	2 cut(s)	322, 356
BsmAI	GTCTC	4 cut(s)	254, 269, 287, 600
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	131, 443
Bsp143I	GATC	2 cut(s)	145, 193
BspACI	CCGC	1 cut(s)	101
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	361
BspMI	ACCTGC	2 cut(s)	318, 487
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	359
BsrI	ACTGG	2 cut(s)	138, 545
BssMI	GATC	2 cut(s)	145, 193
BssNI	GRCGYC	1 cut(s)	360
BssSI	CACGAG	1 cut(s)	272
Bst2BI	CACGAG	1 cut(s)	272
Bst2UI	CCWGG	1 cut(s)	323
Bst4CI	ACNGT	1 cut(s)	511
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	360
BstAPI	GCANNNNNTGC	1 cut(s)	632
BstC8I	GCNNGC	2 cut(s)	288, 476
BstDEI	CTNAG	1 cut(s)	291
BstF5I	GGATG	3 cut(s)	288, 528, 561
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	2 cut(s)	148, 196
BstMAI	GTCTC	4 cut(s)	254, 269, 287, 600
BstMBI	GATC	2 cut(s)	145, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 632
BstNI	CCWGG	1 cut(s)	323
BstNSI	RCATGY	3 cut(s)	249, 290, 478
BstSCI	CCNGG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	443
BstV1I	GCAGC	2 cut(s)	165, 465
BstV2I	GAAGAC	1 cut(s)	333
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	228
BstYI	RGATCY	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	288, 528, 561
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	3 cut(s)	68, 145, 630
BveI	ACCTGC	2 cut(s)	318, 487
Cac8I	GCNNGC	2 cut(s)	288, 476
CfoI	GCGC	1 cut(s)	362
CviAII	CATG	8 cut(s)	27, 75, 149, 208, 246, 279, 287, 475
CviJI	RGCY	9 cut(s)	15, 95, 129, 156, 220, 302, 381, 516, 573
CviKI_1	RGCY	9 cut(s)	15, 95, 129, 156, 220, 302, 381, 516, 573
DdeI	CTNAG	1 cut(s)	291
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	2 cut(s)	147, 195
DpnII	GATC	2 cut(s)	145, 193
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	321
EcoT22I	ATGCAT	2 cut(s)	32, 288
EcoT38I	GRGCYC	1 cut(s)	131
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
FaeI	CATG	8 cut(s)	30, 78, 152, 211, 249, 282, 290, 478
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	8 cut(s)	26, 74, 148, 207, 245, 278, 286, 474
Fnu4HI	GCNGC	3 cut(s)	101, 154, 479
FokI	GGATG	3 cut(s)	295, 535, 568
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	3 cut(s)	101, 154, 479
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	101, 154, 479
GsaI	CCCAGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	363
HhaI	GCGC	1 cut(s)	362
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	8 cut(s)	30, 78, 152, 211, 249, 282, 290, 478
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HinfI	GANTC	1 cut(s)	614
HphI	GGTGA	4 cut(s)	299, 478, 496, 511
Hpy166II	GTNNAC	1 cut(s)	237
Hpy188I	TCNGA	2 cut(s)	90, 455
Hpy188III	TCNNGA	3 cut(s)	388, 553, 566
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 632
HpyF3I	CTNAG	1 cut(s)	291
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	8 cut(s)	30, 78, 152, 211, 249, 282, 290, 478
HspAI	GCGC	1 cut(s)	360
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	2 cut(s)	145, 193
LmnI	GCTCC	1 cut(s)	270
Lsp1109I	GCAGC	2 cut(s)	165, 465
LweI	GCATC	4 cut(s)	75, 273, 513, 546
MalI	GATC	2 cut(s)	147, 195
MboI	GATC	2 cut(s)	145, 193
MboII	GAAGA	4 cut(s)	77, 226, 331, 338
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	2 cut(s)	131, 443
MluCI	AATT	2 cut(s)	420, 548
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	1 cut(s)	500
MnlI	CCTC	5 cut(s)	45, 181, 213, 420, 453
Mph1103I	ATGCAT	2 cut(s)	32, 288
MseI	TTAA	1 cut(s)	260
MslI	CAYNNNNRTG	2 cut(s)	114, 244
MspA1I	CMGCKG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	323
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	106, 632
NarI	GGCGCC	1 cut(s)	360
NdeII	GATC	2 cut(s)	145, 193
NlaIII	CATG	8 cut(s)	30, 78, 152, 211, 249, 282, 290, 478
NlaIV	GGNNCC	1 cut(s)	361
NsiI	ATGCAT	2 cut(s)	32, 288
NspI	RCATGY	3 cut(s)	249, 290, 478
OliI	CACNNNNGTG	1 cut(s)	114
PaeI	GCATGC	2 cut(s)	290, 478
PaqCI	CACCTGC	2 cut(s)	318, 487
PctI	GAATGC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	356
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	3 cut(s)	102, 155, 480
PleI	GAGTC	1 cut(s)	608
PluTI	GGCGCC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	608
Psp6I	CCWGG	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	321
PspN4I	GGNNCC	1 cut(s)	361
PsuI	RGATCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	381
RseI	CAYNNNNRTG	2 cut(s)	114, 244
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	3 cut(s)	101, 154, 479
Sau3AI	GATC	2 cut(s)	145, 193
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	2 cut(s)	131, 443
SetI	ASST	5 cut(s)	114, 312, 383, 501, 592
SfaNI	GCATC	4 cut(s)	75, 273, 513, 546
SfoI	GGCGCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	2 cut(s)	114, 244
SphI	GCATGC	2 cut(s)	290, 478
Sse9I	AATT	2 cut(s)	420, 548
SsiI	CCGC	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	1 cut(s)	37
TasI	AATT	2 cut(s)	420, 548
TauI	GCSGC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TscAI	CASTG	3 cut(s)	68, 145, 637
TseI	GCWGC	2 cut(s)	153, 478
TspDTI	ATGAA	2 cut(s)	63, 227
TspRI	CASTG	3 cut(s)	68, 145, 637
Van91I	CCANNNNNTGG	1 cut(s)	356
XapI	RAATTY	1 cut(s)	548
XceI	RCATGY	3 cut(s)	249, 290, 478
XcmI	CCANNNNNNNNNTGG	2 cut(s)	228, 276
Zsp2I	ATGCAT	2 cut(s)	32, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.