Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

1770123 .. 1771797

Gene Structure 1675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1024700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCCGCCGGGTGCAGTTCTGTGAATTTGGGGGTGTGCAAGGCATCGGTTTCTGGTGGCCCTGTCTTGTCATGTGCTTCCCGCTTTCAAGCTAAGGCGGCTGCGTTTCCATGCTTGAATTCATGGAGAGCTCAGCAGGAAGTTATGCCACTTTTGAACCCCTGTGCTGCATCGAGCCCATTTTTCAGCGGGGATCACGGTAGCCTGTTACGCACAATCCCTGCATTGAAAAGTAGATGCAAATCTCGTATGGCCCCTCAAGCATCTAAGGATGTTCCATACAGTTTTCGGTTCCCTCCAATGACTAAGAAGCCAAAGTGGTGGTGGAGGACATTAGCCTGTCTCCCCTATTTGATGCCCCTACACGAGACATGGATGTATGCTGAGACAGCGTATCATCTACACCCGTTCTTGGAGGACTTTGAATTCTTAACATACCCGTTCCTTGGAGCCATTGGGAGGTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCGTATCTGGGAGTTGTGAGGAGAAAGGAATGGCCTCATTTCTTCAGGTTTCATGTGGTGATGGGCATGTTGCTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCGCTTGCTGTCTACTGGGGTAAGGTTGGGATGCACTTCTGGACGGCCATTGCATTTGCTTACCTTTTCACCGTGTTGGAGGCCATACGTTGTGCTCTTGCTGGCATGTATGCTGATATCCCCTTCGTCTGTGATGCTGCATATATTCAAATTCCATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

260

Amino Acids

29.4

Weight (kDa)

9.15

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	80 - 252	5.7e-73	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	5 cut(s)	6, 82, 98, 189, 617
AclWI	GGATC	1 cut(s)	201
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	4 cut(s)	25, 118, 425, 765
AcuI	CTGAAG	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
AgsI	TTSAA	6 cut(s)	89, 118, 157, 229, 425, 764
AluBI	AGCT	3 cut(s)	92, 131, 471
AluI	AGCT	3 cut(s)	92, 131, 471
Alw21I	GWGCWC	2 cut(s)	133, 712
Alw26I	GTCTC	3 cut(s)	347, 362, 380
AlwI	GGATC	1 cut(s)	201
AoxI	GGCC	5 cut(s)	58, 252, 530, 660, 696
ApeKI	GCWGC	3 cut(s)	101, 167, 752
ApoI	RAATTY	4 cut(s)	25, 118, 425, 765
AspS9I	GGNCC	2 cut(s)	59, 253
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	3 cut(s)	568, 601, 676
BanII	GRGCYC	2 cut(s)	133, 179
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	2 cut(s)	133, 712
BbvI	GCAGC	3 cut(s)	88, 154, 739
BccI	CCATC	2 cut(s)	475, 553
BceAI	ACGGC	2 cut(s)	591, 675
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	347, 362, 380
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	5 cut(s)	99, 102, 168, 617, 753
BlpI	GCTNAGC	1 cut(s)	132
BlsI	GCNGC	5 cut(s)	100, 103, 169, 618, 754
Bme1390I	CCNGG	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	59, 253
BmiI	GGNNCC	3 cut(s)	255, 293, 451
BmrFI	CCNGG	1 cut(s)	10
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	8 cut(s)	53, 179, 227, 272, 345, 603, 636, 739
BmuI	ACTGGG	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	593
Bpu10I	CCTNAGC	1 cut(s)	93
Bpu1102I	GCTNAGC	1 cut(s)	132
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	10
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 446, 459
Bse1I	ACTGG	1 cut(s)	635
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	241
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	4 cut(s)	277, 381, 618, 651
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	2 cut(s)	146, 375
BseNI	ACTGG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	532
BseXI	GCAGC	3 cut(s)	88, 154, 739
BseYI	CCCAGC	1 cut(s)	467
BsgI	GTGCAG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	60, 254, 532, 662, 698
BsiHKAI	GWGCWC	2 cut(s)	133, 712
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
BsmAI	GTCTC	3 cut(s)	347, 362, 380
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	5 cut(s)	60, 254, 532, 662, 698
Bsp1286I	GDGCHC	3 cut(s)	133, 179, 712
Bsp143I	GATC	1 cut(s)	193
Bsp1720I	GCTNAGC	1 cut(s)	132
BspACI	CCGC	5 cut(s)	6, 82, 98, 189, 617
BspANI	GGCC	5 cut(s)	60, 254, 532, 662, 698
BspCNI	CTCAG	2 cut(s)	145, 376
BspLI	GGNNCC	3 cut(s)	255, 293, 451
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	201
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	635
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	1 cut(s)	193
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	365
Bst4CI	ACNGT	4 cut(s)	200, 284, 601, 688
BstC8I	GCNNGC	3 cut(s)	6, 621, 718
BstDEI	CTNAG	5 cut(s)	93, 132, 267, 306, 384
BstF5I	GGATG	4 cut(s)	277, 381, 618, 651
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	3 cut(s)	347, 362, 380
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 210, 260, 389
BstNSI	RCATGY	2 cut(s)	568, 724
BstSCI	CCNGG	1 cut(s)	8
BstV1I	GCAGC	3 cut(s)	88, 154, 739
BstXI	CCANNNNNNTGG	1 cut(s)	321
BsuRI	GGCC	5 cut(s)	60, 254, 532, 662, 698
BtsCI	GGATG	4 cut(s)	277, 381, 618, 651
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	6, 621, 718
Cfr13I	GGNCC	2 cut(s)	59, 253
CviAII	CATG	7 cut(s)	72, 111, 123, 372, 551, 565, 721
DdeI	CTNAG	5 cut(s)	93, 132, 267, 306, 384
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	133, 179
Eco32I	GATATC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	131
EcoRI	GAATTC	2 cut(s)	118, 425
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	133, 179
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	7 cut(s)	75, 114, 126, 375, 554, 568, 724
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	7 cut(s)	71, 110, 122, 371, 550, 564, 720
FauI	CCCGC	3 cut(s)	13, 89, 182
FauNDI	CATATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	5 cut(s)	99, 102, 168, 617, 753
FokI	GGATG	4 cut(s)	284, 388, 625, 658
FriOI	GRGCYC	2 cut(s)	133, 179
Fsp4HI	GCNGC	5 cut(s)	99, 102, 168, 617, 753
GluI	GCNGC	5 cut(s)	99, 102, 168, 617, 753
GsaI	CCCAGC	1 cut(s)	471
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	5 cut(s)	60, 254, 532, 662, 698
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	7 cut(s)	75, 114, 126, 375, 554, 568, 724
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	3 cut(s)	568, 601, 676
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188III	TCNNGA	2 cut(s)	478, 655
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	1 cut(s)	748
HpyCH4III	ACNGT	4 cut(s)	200, 284, 601, 688
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	9 cut(s)	15, 39, 170, 224, 240, 586, 649, 668, 755
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 210, 260, 389
HpyF3I	CTNAG	5 cut(s)	93, 132, 267, 306, 384
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	7 cut(s)	75, 114, 126, 375, 554, 568, 724
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	3 cut(s)	88, 154, 739
LweI	GCATC	8 cut(s)	53, 179, 227, 272, 345, 603, 636, 739
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	207
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	133, 179, 712
MluCI	AATT	4 cut(s)	25, 118, 425, 765
MmeI	TCCRAC	2 cut(s)	590, 672
MnlI	CCTC	8 cut(s)	267, 306, 321, 409, 453, 510, 543, 688
MseI	TTAA	1 cut(s)	431
MspA1I	CMGCKG	2 cut(s)	189, 471
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	10
MwoI	GCNNNNNNNGC	4 cut(s)	98, 210, 260, 389
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	7 cut(s)	75, 114, 126, 375, 554, 568, 724
NlaIV	GGNNCC	3 cut(s)	255, 293, 451
NspI	RCATGY	2 cut(s)	568, 724
PaqCI	CACCTGC	1 cut(s)	577
PkrI	GCNGC	5 cut(s)	100, 103, 169, 618, 754
Psp124BI	GAGCTC	1 cut(s)	133
PspFI	CCCAGC	1 cut(s)	467
PspN4I	GGNNCC	3 cut(s)	255, 293, 451
PspPI	GGNCC	2 cut(s)	59, 253
PvuII	CAGCTG	1 cut(s)	471
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	5 cut(s)	99, 102, 168, 617, 753
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	59, 253
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	3 cut(s)	133, 179, 712
SetI	ASST	9 cut(s)	94, 133, 464, 473, 548, 591, 642, 681, 706
SfaNI	GCATC	8 cut(s)	53, 179, 227, 272, 345, 603, 636, 739
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	4 cut(s)	25, 118, 425, 765
SsiI	CCGC	5 cut(s)	6, 82, 98, 189, 617
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	4 cut(s)	200, 284, 601, 688
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	25, 118, 425, 765
TauI	GCSGC	2 cut(s)	101, 619
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TseI	GCWGC	3 cut(s)	101, 167, 752
TspDTI	ATGAA	2 cut(s)	111, 539
XapI	RAATTY	4 cut(s)	25, 118, 425, 765
XceI	RCATGY	2 cut(s)	568, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.