Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

9927192 .. 9928209

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g11730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCCGCCGGGTGTAGTTCTGTGAATTTCGCAGAGTGTAAGCCATCGATTTCTGGTGGCCCTGTTTTGTCATGTGCTTCCCGTTTTCTGATGAAGGCGACTGTGTTTCCATGCGTCAGGTCATGGAGAGCTCGGCAGGAAGTTATGCCACTTTTGAACCTCTGTGCTGCATCGAGCCCATTTTTCAGCAGGGGGCATGGTAGCTTGTTACGCACAATCCCTGCATTGAAAAGTAGATACGAATCTCGAATGGCTCCTCAAGCATCTAAGGATGTTCCATACAGTTTTCGATTCCCTCCAATGACTAAGAAGCCAAAGTGGTGGTGGAGGACATTAGCCTGTCTCCCCTATTTGATGCCCCTACATGAGACATGGATGTATGCTGAGACAGCGTATCATCTACACCCTTTCCTGGAGGACTTTGAATTCTTAACATACCCGTTCCTTGGGGCCATTGGAAGGTTGCCCAACTGGTTCTTGATGGCATACTTTTTCGTTGCGTATCTGGGAGTTGTGAGGAGAAAGGAATGGCCTCATTTCTTCAGATTTCATGTGGTGATGGGCATGTTGCTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGTCGTTGGATGCCGCTTGCTGTCTACTGGGGTAAGGTTGGGATGCACTTCTGGACGGCCATTGCATTTGCTTACCTTTTTACCGTGTTGGAGGCCATACGTTGTGCTCTTGCTGGCATGTATGCTGATATCCCCTTCGTCTGTGATGCTGCATATATTCAAATTCCATATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

260

Amino Acids

29.82

Weight (kDa)

9.3

Isoelectric Point (pI)

53.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	79 - 252	1.3e-72	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	627
AciI	CCGC	2 cut(s)	6, 617
AcoI	YGGCCR	1 cut(s)	660
AcsI	RAATTY	3 cut(s)	25, 425, 765
AcuI	CTGAAG	1 cut(s)	526
AfiI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
AgsI	TTSAA	4 cut(s)	157, 229, 425, 764
AhdI	GACNNNNNGTC	1 cut(s)	603
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	2 cut(s)	131, 204
AluI	AGCT	2 cut(s)	131, 204
Alw21I	GWGCWC	2 cut(s)	133, 712
Alw26I	GTCTC	3 cut(s)	347, 362, 380
AoxI	GGCC	5 cut(s)	58, 450, 530, 660, 696
ApeKI	GCWGC	2 cut(s)	167, 752
ApoI	RAATTY	3 cut(s)	25, 425, 765
AspS9I	GGNCC	2 cut(s)	59, 450
AsuC2I	CCSGG	1 cut(s)	10
AsuHPI	GGTGA	2 cut(s)	568, 601
BanII	GRGCYC	2 cut(s)	133, 179
Bbv12I	GWGCWC	2 cut(s)	133, 712
BbvI	GCAGC	2 cut(s)	154, 739
BccI	CCATC	3 cut(s)	52, 475, 553
BceAI	ACGGC	1 cut(s)	675
BciT130I	CCWGG	1 cut(s)	413
BcnI	CCSGG	1 cut(s)	10
BcoDI	GTCTC	3 cut(s)	347, 362, 380
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	3 cut(s)	168, 617, 753
BlsI	GCNGC	3 cut(s)	169, 618, 754
Bme1390I	CCNGG	2 cut(s)	10, 413
BmeRI	GACNNNNNGTC	1 cut(s)	603
BmgT120I	GGNCC	2 cut(s)	59, 450
BmiI	GGNNCC	2 cut(s)	255, 451
BmrFI	CCNGG	2 cut(s)	10, 413
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	6 cut(s)	179, 272, 345, 603, 636, 739
BmuI	ACTGGG	1 cut(s)	640
BpmI	CTGGAG	2 cut(s)	434, 593
BpuEI	CTTGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	10
Bsa29I	ATCGAT	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 446, 459
Bse1I	ACTGG	2 cut(s)	476, 635
Bse3DI	GCAATG	1 cut(s)	663
Bse8I	GATNNNNATC	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	413
BseCI	ATCGAT	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	4 cut(s)	277, 381, 618, 651
BseJI	GATNNNNATC	1 cut(s)	241
BseLI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	476, 635
BseRI	GAGGAG	2 cut(s)	246, 532
BseXI	GCAGC	2 cut(s)	154, 739
BshFI	GGCC	5 cut(s)	60, 452, 532, 662, 698
BshVI	ATCGAT	1 cut(s)	47
BsiHKAI	GWGCWC	2 cut(s)	133, 712
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	3 cut(s)	412, 446, 459
BsmAI	GTCTC	3 cut(s)	347, 362, 380
BsmFI	GGGAC	1 cut(s)	610
BsnI	GGCC	5 cut(s)	60, 452, 532, 662, 698
Bsp1286I	GDGCHC	3 cut(s)	133, 179, 712
BspACI	CCGC	2 cut(s)	6, 617
BspANI	GGCC	5 cut(s)	60, 452, 532, 662, 698
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	255, 451
BspMI	ACCTGC	1 cut(s)	577
BsrDI	GCAATG	1 cut(s)	663
BsrI	ACTGG	2 cut(s)	476, 635
BssECI	CCNNGG	1 cut(s)	445
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	4 cut(s)	103, 284, 601, 688
BstC8I	GCNNGC	3 cut(s)	6, 621, 718
BstDEI	CTNAG	3 cut(s)	267, 306, 384
BstF5I	GGATG	4 cut(s)	277, 381, 618, 651
BstMAI	GTCTC	3 cut(s)	347, 362, 380
BstMWI	GCNNNNNNNGC	3 cut(s)	210, 260, 389
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	568, 724
BstSCI	CCNGG	2 cut(s)	8, 411
BstV1I	GCAGC	2 cut(s)	154, 739
BstXI	CCANNNNNNTGG	1 cut(s)	321
Bsu15I	ATCGAT	1 cut(s)	47
BsuRI	GGCC	5 cut(s)	60, 452, 532, 662, 698
BsuTUI	ATCGAT	1 cut(s)	47
BtsCI	GGATG	4 cut(s)	277, 381, 618, 651
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	6, 621, 718
Cfr13I	GGNCC	2 cut(s)	59, 450
ClaI	ATCGAT	1 cut(s)	47
CseI	GACGC	1 cut(s)	103
CviAII	CATG	9 cut(s)	72, 111, 123, 197, 365, 372, 551, 565, 721
DdeI	CTNAG	3 cut(s)	267, 306, 384
DriI	GACNNNNNGTC	1 cut(s)	603
EaeI	YGGCCR	1 cut(s)	660
Eam1105I	GACNNNNNGTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	131
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	2 cut(s)	133, 179
Eco32I	GATATC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	1 cut(s)	526
EcoICRI	GAGCTC	1 cut(s)	131
EcoRI	GAATTC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	733
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	2 cut(s)	133, 179
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	9 cut(s)	75, 114, 126, 200, 368, 375, 554, 568, 724
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	9 cut(s)	71, 110, 122, 196, 364, 371, 550, 564, 720
FauI	CCCGC	1 cut(s)	13
FauNDI	CATATG	1 cut(s)	772
FblI	GTMKAC	1 cut(s)	627
Fnu4HI	GCNGC	3 cut(s)	168, 617, 753
FokI	GGATG	4 cut(s)	284, 388, 625, 658
FriOI	GRGCYC	2 cut(s)	133, 179
Fsp4HI	GCNGC	3 cut(s)	168, 617, 753
GluI	GCNGC	3 cut(s)	168, 617, 753
GsuI	CTGGAG	2 cut(s)	434, 593
HaeIII	GGCC	5 cut(s)	60, 452, 532, 662, 698
HapII	CCGG	1 cut(s)	9
HgaI	GACGC	1 cut(s)	103
Hin1II	CATG	9 cut(s)	75, 114, 126, 200, 368, 375, 554, 568, 724
HinfI	GANTC	3 cut(s)	242, 291, 604
HpaII	CCGG	1 cut(s)	9
HphI	GGTGA	2 cut(s)	568, 601
Hpy166II	GTNNAC	1 cut(s)	628
Hpy188I	TCNGA	2 cut(s)	90, 545
Hpy188III	TCNNGA	3 cut(s)	246, 478, 655
Hpy8I	GTNNAC	1 cut(s)	628
HpyAV	CCTTC	3 cut(s)	88, 453, 748
HpyCH4III	ACNGT	4 cut(s)	103, 284, 601, 688
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	170, 224, 586, 649, 668, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	210, 260, 389
HpyF3I	CTNAG	3 cut(s)	267, 306, 384
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	9 cut(s)	75, 114, 126, 200, 368, 375, 554, 568, 724
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	2 cut(s)	154, 739
LweI	GCATC	6 cut(s)	179, 272, 345, 603, 636, 739
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	1 cut(s)	207
MboII	GAAGA	1 cut(s)	532
MhlI	GDGCHC	3 cut(s)	133, 179, 712
MluCI	AATT	3 cut(s)	25, 425, 765
MlyI	GAGTC	1 cut(s)	613
MmeI	TCCRAC	2 cut(s)	590, 672
MnlI	CCTC	8 cut(s)	170, 267, 306, 321, 409, 510, 543, 688
MseI	TTAA	1 cut(s)	431
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	10, 413
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	3 cut(s)	210, 260, 389
NciI	CCSGG	1 cut(s)	10
NdeI	CATATG	1 cut(s)	772
NlaIII	CATG	9 cut(s)	75, 114, 126, 200, 368, 375, 554, 568, 724
NlaIV	GGNNCC	2 cut(s)	255, 451
NmeAIII	GCCGAG	1 cut(s)	112
NspI	RCATGY	2 cut(s)	568, 724
PaqCI	CACCTGC	1 cut(s)	577
PfeI	GAWTC	2 cut(s)	242, 291
PfoI	TCCNGGA	1 cut(s)	411
PkrI	GCNGC	3 cut(s)	169, 618, 754
PleI	GAGTC	1 cut(s)	612
PpsI	GAGTC	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	255, 451
PspPI	GGNCC	2 cut(s)	59, 450
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	3 cut(s)	168, 617, 753
Sau96I	GGNCC	2 cut(s)	59, 450
SchI	GAGTC	1 cut(s)	613
ScrFI	CCNGG	2 cut(s)	10, 413
SduI	GDGCHC	3 cut(s)	133, 179, 712
SetI	ASST	9 cut(s)	122, 133, 162, 206, 464, 591, 642, 681, 706
SfaNI	GCATC	6 cut(s)	179, 272, 345, 603, 636, 739
SmlI	CTYRAG	1 cut(s)	258
SmoI	CTYRAG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	25, 425, 765
SsiI	CCGC	2 cut(s)	6, 617
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	8, 411
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	4 cut(s)	103, 284, 601, 688
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	4 cut(s)	47, 173, 247, 289
TasI	AATT	3 cut(s)	25, 425, 765
TauI	GCSGC	1 cut(s)	619
TfiI	GAWTC	2 cut(s)	242, 291
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TseI	GCWGC	2 cut(s)	167, 752
TspDTI	ATGAA	2 cut(s)	107, 539
XapI	RAATTY	3 cut(s)	25, 425, 765
XceI	RCATGY	2 cut(s)	568, 724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	627

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.