Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

7833661 .. 7835505

Gene Structure 1845 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011234

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGCTACTGTGGCTCTGTATCAGCAAAAGGTACTTGGCTATGATTCCAAATGCATGTACCAGACCCAGTGGGTGTATTTCTGTAAATTCGAGAGTATGTAAGCCAACGATATGCAGTAGCCCTGTGTTATCATGCATTCCTCGTTTTCAGAGTAAGAGTGCTTTTCAATGCATCAGTTCATGGAGTTCCCCTCAGAAGGCTATGCCGCTTCTGCACCGCTGTGCTGCGTCGAGCCCATTTTTCAGTGGGGATCAAGGCAGCCTTTTACGCACAATCCCCACACTGCAAAGGCGAGGCAGATCCAGTATGGCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCGGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGAGGACATTGGCTTGTCTCCCCTACTTAATGCCTCTACACGAGACATGGATGTATGCTGAGACAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAGAAAGGAGTGGCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATGCTACTGGAGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTATTTACTGGGGTAAATTCGGGATGCACTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGTGTTGGAGTGCATACGCTGTGCTCTTGCTGGTATGTACGCTGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

279

Amino Acids

32.07

Weight (kDa)

9.31

Isoelectric Point (pI)

61.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	99 - 271	1.8e-72	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	465, 634
Acc36I	ACCTGC	2 cut(s)	465, 634
AccB1I	GGYRCC	1 cut(s)	506
AccB7I	CCANNNNNTGG	1 cut(s)	503
AciI	CCGC	2 cut(s)	206, 217
AclWI	GGATC	2 cut(s)	258, 294
AcsI	RAATTY	3 cut(s)	85, 695, 822
AcuI	CTGAAG	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	507
AfaI	GTAC	3 cut(s)	32, 58, 782
AfiI	CCNNNNNNNGG	3 cut(s)	196, 469, 503
AgsI	TTSAA	2 cut(s)	167, 821
AjnI	CCWGG	1 cut(s)	468
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	528
AluI	AGCT	1 cut(s)	528
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	3 cut(s)	404, 419, 437
AlwI	GGATC	2 cut(s)	258, 294
AoxI	GGCC	2 cut(s)	309, 587
ApeKI	GCWGC	3 cut(s)	224, 258, 809
ApoI	RAATTY	3 cut(s)	85, 695, 822
AspLEI	GCGC	1 cut(s)	509
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	3 cut(s)	446, 625, 658
BanI	GGYRCC	1 cut(s)	506
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	3 cut(s)	211, 270, 796
BccI	CCATC	2 cut(s)	532, 610
BceAI	ACGGC	2 cut(s)	648, 704
BciT130I	CCWGG	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	404, 419, 437
BfoI	RGCGCY	1 cut(s)	510
BfuAI	ACCTGC	2 cut(s)	465, 634
BisI	GCNGC	4 cut(s)	206, 225, 259, 810
BlsI	GCNGC	4 cut(s)	207, 226, 260, 811
Bme1390I	CCNGG	1 cut(s)	470
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	3 cut(s)	312, 350, 508
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	2 cut(s)	60, 697
BmsI	GCATC	5 cut(s)	180, 329, 660, 693, 796
BmuI	ACTGGG	2 cut(s)	60, 697
BpiI	GAAGAC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	175, 207
BpmI	CTGGAG	1 cut(s)	650
BpuEI	CTTGAG	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	3 cut(s)	196, 469, 503
Bse1I	ACTGG	4 cut(s)	66, 303, 633, 692
BseBI	CCWGG	1 cut(s)	470
BseGI	GGATG	4 cut(s)	334, 438, 675, 708
BseLI	CCNNNNNNNGG	3 cut(s)	196, 469, 503
BseMII	CTCAG	2 cut(s)	206, 432
BseNI	ACTGG	4 cut(s)	66, 303, 633, 692
BseRI	GAGGAG	1 cut(s)	589
BseXI	GCAGC	3 cut(s)	211, 270, 796
BseYI	CCCAGC	1 cut(s)	524
BsgI	GTGCAG	2 cut(s)	197, 443
BshFI	GGCC	2 cut(s)	311, 589
BshNI	GGYRCC	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	769
BslFI	GGGAC	2 cut(s)	317, 667
BslI	CCNNNNNNNGG	3 cut(s)	196, 469, 503
BsmAI	GTCTC	3 cut(s)	404, 419, 437
BsmFI	GGGAC	2 cut(s)	317, 667
BsmI	GAATGC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	311, 589
Bsp1286I	GDGCHC	2 cut(s)	236, 769
Bsp143I	GATC	2 cut(s)	250, 299
BspACI	CCGC	2 cut(s)	206, 217
BspANI	GGCC	2 cut(s)	311, 589
BspCNI	CTCAG	2 cut(s)	205, 433
BspLI	GGNNCC	3 cut(s)	312, 350, 508
BspMI	ACCTGC	2 cut(s)	465, 634
BspPI	GGATC	2 cut(s)	258, 294
BspT107I	GGYRCC	1 cut(s)	506
BsrI	ACTGG	4 cut(s)	66, 303, 633, 692
BssMI	GATC	2 cut(s)	250, 299
BssNI	GRCGYC	1 cut(s)	507
BssSI	CACGAG	1 cut(s)	422
Bst2BI	CACGAG	1 cut(s)	422
Bst2UI	CCWGG	1 cut(s)	470
Bst4CI	ACNGT	4 cut(s)	9, 341, 658, 745
BstACI	GRCGYC	1 cut(s)	507
BstC8I	GCNNGC	1 cut(s)	623
BstDEI	CTNAG	3 cut(s)	192, 324, 441
BstF5I	GGATG	4 cut(s)	334, 438, 675, 708
BstH2I	RGCGCY	1 cut(s)	510
BstHHI	GCGC	1 cut(s)	509
BstKTI	GATC	2 cut(s)	253, 302
BstMAI	GTCTC	3 cut(s)	404, 419, 437
BstMBI	GATC	2 cut(s)	250, 299
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 211, 267, 317, 446
BstNI	CCWGG	1 cut(s)	470
BstNSI	RCATGY	2 cut(s)	57, 625
BstSCI	CCNGG	1 cut(s)	468
BstV1I	GCAGC	3 cut(s)	211, 270, 796
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	299
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	311, 589
BtsCI	GGATG	4 cut(s)	334, 438, 675, 708
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	4 cut(s)	73, 250, 281, 750
BveI	ACCTGC	2 cut(s)	465, 634
Cac8I	GCNNGC	1 cut(s)	623
CfoI	GCGC	1 cut(s)	509
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	31, 57, 781
CviAII	CATG	7 cut(s)	54, 132, 180, 358, 429, 608, 622
CviQI	GTAC	3 cut(s)	31, 57, 781
DdeI	CTNAG	3 cut(s)	192, 324, 441
DinI	GGCGCC	1 cut(s)	508
DpnI	GATC	2 cut(s)	252, 301
DpnII	GATC	2 cut(s)	250, 299
Eco24I	GRGCYC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	790
EcoT22I	ATGCAT	3 cut(s)	55, 137, 173
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	508
EheI	GGCGCC	1 cut(s)	508
FaeI	CATG	7 cut(s)	57, 135, 183, 361, 432, 611, 625
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FaqI	GGGAC	2 cut(s)	317, 667
FatI	CATG	7 cut(s)	53, 131, 179, 357, 428, 607, 621
Fnu4HI	GCNGC	4 cut(s)	206, 225, 259, 810
FokI	GGATG	4 cut(s)	341, 445, 682, 715
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	206, 225, 259, 810
GlaI	GCGC	1 cut(s)	508
GluI	GCNGC	4 cut(s)	206, 225, 259, 810
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	311, 589
HgaI	GACGC	1 cut(s)	216
HhaI	GCGC	1 cut(s)	509
Hin1I	GRCGYC	1 cut(s)	507
Hin1II	CATG	7 cut(s)	57, 135, 183, 361, 432, 611, 625
Hin6I	GCGC	1 cut(s)	507
HinP1I	GCGC	1 cut(s)	507
HinfI	GANTC	1 cut(s)	43
HphI	GGTGA	3 cut(s)	446, 625, 658
Hpy188I	TCNGA	3 cut(s)	150, 195, 602
Hpy188III	TCNNGA	4 cut(s)	90, 535, 700, 712
Hpy99I	CGWCG	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	4 cut(s)	9, 341, 658, 745
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 211, 267, 317, 446
HpyF3I	CTNAG	3 cut(s)	192, 324, 441
Hsp92I	GRCGYC	1 cut(s)	507
Hsp92II	CATG	7 cut(s)	57, 135, 183, 361, 432, 611, 625
HspAI	GCGC	1 cut(s)	507
KasI	GGCGCC	1 cut(s)	506
Kzo9I	GATC	2 cut(s)	250, 299
Lsp1109I	GCAGC	3 cut(s)	211, 270, 796
LweI	GCATC	5 cut(s)	180, 329, 660, 693, 796
MalI	GATC	2 cut(s)	252, 301
MboI	GATC	2 cut(s)	250, 299
MboII	GAAGA	4 cut(s)	376, 478, 485, 589
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	2 cut(s)	236, 769
MluCI	AATT	4 cut(s)	85, 567, 695, 822
Mly113I	GGCGCC	1 cut(s)	507
MmeI	TCCRAC	2 cut(s)	647, 729
MnlI	CCTC	9 cut(s)	150, 201, 287, 324, 363, 378, 426, 567, 600
Mph1103I	ATGCAT	3 cut(s)	55, 137, 173
MseI	TTAA	1 cut(s)	410
MslI	CAYNNNNRTG	1 cut(s)	219
MspA1I	CMGCKG	2 cut(s)	219, 528
MspR9I	CCNGG	1 cut(s)	470
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	5 cut(s)	10, 211, 267, 317, 446
NarI	GGCGCC	1 cut(s)	507
NdeII	GATC	2 cut(s)	250, 299
NlaIII	CATG	7 cut(s)	57, 135, 183, 361, 432, 611, 625
NlaIV	GGNNCC	3 cut(s)	312, 350, 508
NsiI	ATGCAT	3 cut(s)	55, 137, 173
NspI	RCATGY	2 cut(s)	57, 625
OliI	CACNNNNGTG	1 cut(s)	219
PaeI	GCATGC	1 cut(s)	625
PaqCI	CACCTGC	2 cut(s)	465, 634
PctI	GAATGC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	43
PflMI	CCANNNNNTGG	1 cut(s)	503
PfoI	TCCNGGA	1 cut(s)	468
PkrI	GCNGC	4 cut(s)	207, 226, 260, 811
PluTI	GGCGCC	1 cut(s)	510
Psp6I	CCWGG	1 cut(s)	468
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	312, 350, 508
PspPI	GGNCC	1 cut(s)	310
PsuI	RGATCY	1 cut(s)	299
PvuII	CAGCTG	1 cut(s)	528
RsaI	GTAC	3 cut(s)	32, 58, 782
RsaNI	GTAC	3 cut(s)	31, 57, 781
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	410
SatI	GCNGC	4 cut(s)	206, 225, 259, 810
Sau3AI	GATC	2 cut(s)	250, 299
Sau96I	GGNCC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	2 cut(s)	236, 769
SetI	ASST	5 cut(s)	32, 459, 530, 648, 738
SfaNI	GCATC	5 cut(s)	180, 329, 660, 693, 796
SfoI	GGCGCC	1 cut(s)	508
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SphI	GCATGC	1 cut(s)	625
Sse9I	AATT	4 cut(s)	85, 567, 695, 822
SsiI	CCGC	2 cut(s)	206, 217
SspDI	GGCGCC	1 cut(s)	506
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	9, 341, 658, 745
TaqI	TCGA	2 cut(s)	89, 230
TasI	AATT	4 cut(s)	85, 567, 695, 822
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	410
Tru9I	TTAA	1 cut(s)	410
TscAI	CASTG	4 cut(s)	73, 250, 288, 750
TseI	GCWGC	3 cut(s)	224, 258, 809
TspDTI	ATGAA	3 cut(s)	168, 377, 596
TspRI	CASTG	4 cut(s)	73, 250, 288, 750
Van91I	CCANNNNNTGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	85, 695, 822
XceI	RCATGY	2 cut(s)	57, 625
XcmI	CCANNNNNNNNNTGG	1 cut(s)	378
Zsp2I	ATGCAT	3 cut(s)	55, 137, 173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.