Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Reverse (-)

14361436 .. 14362751

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G014360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATTCCAAATGCATGTACCAGACCCAGTGGGTGTATCTTTATAAATTCGAGTGTGTGTAAGCCAACGATATGCAGTAGCCCTGTGTTGTCATGCATTCCTCGATTTCAAAGTAATAGTTCTTTTCAGTGCATCAGTTCATGGAGTTCTCTTCAGAAGTGGGGATCATGGCAGCCTTTACGCACAATCCCCACACTACAAAGGCGAGGCAGATCTAGTATGCCCCCTCAAGCATCTAAGGATGTCCCATACAGTTTTCAGTTCCCTCCCATGATGAAGAAGCCAAAGTGGTGGTGGTGGACATTAGCATGTCTCCCCTACTTAATGCTCCCACACGAGACATGGATGCATGCTGAGACAGCCTATCAGCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCACATACCCATTTCTTGGCGCCGTTGGGAGTTTGCCCAGCTGGTTCTTGATGGCATACTTTTTCGTTGCATATCTTGGAATTGTAAGGAAAAAGGAGTGCCCTCACTTCTTCAGATTTCATGTGGTGATGGGCATACTGTTGGTGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTTGCTATTTACTGGGGTAAATTCGGGATGCACTTCTGGACAGCCTGCATACACTGTGCTCTTGCTGGTATGTACGCTGATATCCCCTTTGTTTGTGATGCTGCATATATTCAAATTCCCTATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

238

Amino Acids

27.51

Weight (kDa)

8.98

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	71 - 231	4.2e-52	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	1 cut(s)	416
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	3 cut(s)	46, 608, 702
AcuI	CTGAAG	2 cut(s)	137, 496
AcyI	GRCGYC	1 cut(s)	420
AfaI	GTAC	2 cut(s)	19, 662
AfiI	CCNNNNNNNGG	2 cut(s)	382, 416
AgsI	TTSAA	2 cut(s)	110, 701
AjnI	CCWGG	1 cut(s)	381
AluBI	AGCT	2 cut(s)	370, 441
AluI	AGCT	2 cut(s)	370, 441
Alw21I	GWGCWC	1 cut(s)	649
Alw26I	GTCTC	3 cut(s)	317, 332, 350
AlwI	GGATC	1 cut(s)	172
ApeKI	GCWGC	3 cut(s)	172, 370, 689
ApoI	RAATTY	3 cut(s)	46, 608, 702
AspLEI	GCGC	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	538, 556, 571
BaeGI	GKGCMC	1 cut(s)	503
BanI	GGYRCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	335
BbsI	GAAGAC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	649
BbvI	GCAGC	3 cut(s)	184, 357, 676
BccI	CCATC	2 cut(s)	445, 523
BceAI	ACGGC	2 cut(s)	407, 561
BciT130I	CCWGG	1 cut(s)	383
BcoDI	GTCTC	3 cut(s)	317, 332, 350
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	423
BfuAI	ACCTGC	1 cut(s)	547
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	3 cut(s)	173, 371, 690
BlsI	GCNGC	3 cut(s)	174, 372, 691
Bme1390I	CCNGG	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	383
BmrI	ACTGGG	2 cut(s)	21, 610
BmsI	GCATC	6 cut(s)	141, 242, 336, 573, 606, 676
BmuI	ACTGGG	2 cut(s)	21, 610
BpiI	GAAGAC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	420
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 416
Bse1I	ACTGG	2 cut(s)	27, 605
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	4 cut(s)	247, 351, 588, 621
BseLI	CCNNNNNNNGG	2 cut(s)	382, 416
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	27, 605
BseSI	GKGCMC	1 cut(s)	503
BseXI	GCAGC	3 cut(s)	184, 357, 676
BseYI	CCCAGC	1 cut(s)	437
BsgI	GTGCAG	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	649
BslFI	GGGAC	2 cut(s)	230, 580
BslI	CCNNNNNNNGG	2 cut(s)	382, 416
BsmAI	GTCTC	3 cut(s)	317, 332, 350
BsmFI	GGGAC	2 cut(s)	230, 580
BsmI	GAATGC	1 cut(s)	96
Bsp1286I	GDGCHC	2 cut(s)	503, 649
Bsp143I	GATC	2 cut(s)	164, 212
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	421
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	172
BspT107I	GGYRCC	1 cut(s)	419
BsrI	ACTGG	2 cut(s)	27, 605
BssMI	GATC	2 cut(s)	164, 212
BssNI	GRCGYC	1 cut(s)	420
BssSI	CACGAG	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	4 cut(s)	254, 540, 571, 644
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	351, 634
BstDEI	CTNAG	2 cut(s)	237, 354
BstF5I	GGATG	4 cut(s)	247, 351, 588, 621
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	2 cut(s)	167, 215
BstMAI	GTCTC	3 cut(s)	317, 332, 350
BstMBI	GATC	2 cut(s)	164, 212
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	3 cut(s)	18, 312, 353
BstSCI	CCNGG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	503
BstV1I	GCAGC	3 cut(s)	184, 357, 676
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	212
BstXI	CCANNNNNNTGG	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	212
BtsCI	GGATG	4 cut(s)	247, 351, 588, 621
BtsIMutI	CAGTG	3 cut(s)	34, 134, 640
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	351, 634
CfoI	GCGC	1 cut(s)	422
Csp6I	GTAC	2 cut(s)	18, 661
CviAII	CATG	9 cut(s)	15, 93, 141, 168, 271, 309, 342, 350, 521
CviJI	RGCY	9 cut(s)	64, 81, 175, 283, 362, 370, 441, 576, 632
CviKI_1	RGCY	9 cut(s)	64, 81, 175, 283, 362, 370, 441, 576, 632
CviQI	GTAC	2 cut(s)	18, 661
DdeI	CTNAG	2 cut(s)	237, 354
DinI	GGCGCC	1 cut(s)	421
DpnI	GATC	2 cut(s)	166, 214
DpnII	GATC	2 cut(s)	164, 212
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	670
Eco57I	CTGAAG	2 cut(s)	137, 496
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	670
EcoT22I	ATGCAT	3 cut(s)	16, 98, 351
EgeI	GGCGCC	1 cut(s)	421
EheI	GGCGCC	1 cut(s)	421
FaeI	CATG	9 cut(s)	18, 96, 144, 171, 274, 312, 345, 353, 524
FaqI	GGGAC	2 cut(s)	230, 580
FatI	CATG	9 cut(s)	14, 92, 140, 167, 270, 308, 341, 349, 520
Fnu4HI	GCNGC	3 cut(s)	173, 371, 690
FokI	GGATG	4 cut(s)	254, 358, 595, 628
Fsp4HI	GCNGC	3 cut(s)	173, 371, 690
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	3 cut(s)	173, 371, 690
GsaI	CCCAGC	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	423
HhaI	GCGC	1 cut(s)	422
Hin1I	GRCGYC	1 cut(s)	420
Hin1II	CATG	9 cut(s)	18, 96, 144, 171, 274, 312, 345, 353, 524
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	3 cut(s)	538, 556, 571
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	156, 515
Hpy188III	TCNNGA	3 cut(s)	448, 613, 625
Hpy8I	GTNNAC	1 cut(s)	300
HpyCH4III	ACNGT	4 cut(s)	254, 540, 571, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
HpyF3I	CTNAG	2 cut(s)	237, 354
Hsp92I	GRCGYC	1 cut(s)	420
Hsp92II	CATG	9 cut(s)	18, 96, 144, 171, 274, 312, 345, 353, 524
HspAI	GCGC	1 cut(s)	420
KasI	GGCGCC	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	164, 212
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	3 cut(s)	184, 357, 676
LweI	GCATC	6 cut(s)	141, 242, 336, 573, 606, 676
MaeI	CTAG	1 cut(s)	216
MalI	GATC	2 cut(s)	166, 214
MboI	GATC	2 cut(s)	164, 212
MboII	GAAGA	5 cut(s)	143, 289, 391, 398, 502
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	503, 649
MluCI	AATT	4 cut(s)	46, 480, 608, 702
Mly113I	GGCGCC	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	560
MnlI	CCTC	5 cut(s)	111, 200, 237, 276, 513
Mph1103I	ATGCAT	3 cut(s)	16, 98, 351
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	307
MspA1I	CMGCKG	2 cut(s)	370, 441
MspR9I	CCNGG	1 cut(s)	383
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	359
NarI	GGCGCC	1 cut(s)	420
NdeII	GATC	2 cut(s)	164, 212
NlaIII	CATG	9 cut(s)	18, 96, 144, 171, 274, 312, 345, 353, 524
NlaIV	GGNNCC	1 cut(s)	421
NsiI	ATGCAT	3 cut(s)	16, 98, 351
NspI	RCATGY	3 cut(s)	18, 312, 353
PaeI	GCATGC	1 cut(s)	353
PaqCI	CACCTGC	1 cut(s)	547
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	416
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	3 cut(s)	174, 372, 691
PluTI	GGCGCC	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	44
Psp6I	CCWGG	1 cut(s)	381
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	2 cut(s)	370, 441
RsaI	GTAC	2 cut(s)	19, 662
RsaNI	GTAC	2 cut(s)	18, 661
RseI	CAYNNNNRTG	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	3 cut(s)	173, 371, 690
Sau3AI	GATC	2 cut(s)	164, 212
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	2 cut(s)	503, 649
SetI	ASST	3 cut(s)	372, 443, 561
SfaNI	GCATC	6 cut(s)	141, 242, 336, 573, 606, 676
SfoI	GGCGCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
SphI	GCATGC	1 cut(s)	353
Sse9I	AATT	4 cut(s)	46, 480, 608, 702
SspDI	GGCGCC	1 cut(s)	419
SspMI	CTAG	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	254, 540, 571, 644
TaqI	TCGA	2 cut(s)	50, 103
TasI	AATT	4 cut(s)	46, 480, 608, 702
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	3 cut(s)	34, 134, 647
TseI	GCWGC	3 cut(s)	172, 370, 689
TspDTI	ATGAA	3 cut(s)	129, 290, 509
TspRI	CASTG	3 cut(s)	34, 134, 647
Van91I	CCANNNNNTGG	1 cut(s)	416
XapI	RAATTY	3 cut(s)	46, 608, 702
XceI	RCATGY	3 cut(s)	18, 312, 353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	291, 339
XspI	CTAG	1 cut(s)	216
Zsp2I	ATGCAT	3 cut(s)	16, 98, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.