Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335489.1

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

22 .. 989

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335489.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

atgattccaaatgcatgtaccagacccagtgggtttatctctgtaaattcgagagtatgtaagccatcgatatgcagtagccctgtgttgtcatgcattcctcgttttcaaagtaagagtgcttttcaatgtatcagttcatggagttcccctcagaaggctatgccgcttctgcacccccgtgctgcgtcgagcccatttttcagtggggatcaaggcagccttttacgcacaatccccacactgcaaaggcgaggcagatccagtatggcccctcaagcatctaaggatgtcccgtacagttttcggttccctcccatgatgaagaagccaaagtggtggtggaggacattggcttgtctcccctacttaatgcccctacacgagacatggatgtatgctgagacagcctatcacctgcaccctttcctggaagactttgagttcttcacatacccatttcttggcgccattgggagtttgcccagctggttcttgatggcatactttttcgttgcatatcttggaattgtgaggagaaaggagtggcctcacttcttcagatttcatgtggtgatgggcatgctactggagattgccttgcaggtgatagggactgtgagccgttggatgccacttgctatttactggggtaaattcgggatgcacttctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

224

Amino Acids

25.91

Weight (kDa)

9.9

Isoelectric Point (pI)

66.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	426, 595
Acc36I	ACCTGC	2 cut(s)	426, 595
AccB1I	GGYRCC	1 cut(s)	467
AccB7I	CCANNNNNTGG	1 cut(s)	464
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	219, 255
AcsI	RAATTY	2 cut(s)	46, 656
AcuI	CTGAAG	1 cut(s)	544
AcyI	GRCGYC	1 cut(s)	468
AfaI	GTAC	2 cut(s)	19, 299
AfiI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
AgsI	TTSAA	2 cut(s)	110, 128
AjnI	CCWGG	1 cut(s)	429
AleI	CACNNNNGTG	1 cut(s)	180
AluBI	AGCT	1 cut(s)	489
AluI	AGCT	1 cut(s)	489
Alw26I	GTCTC	3 cut(s)	365, 380, 398
AlwI	GGATC	2 cut(s)	219, 255
AoxI	GGCC	2 cut(s)	270, 548
ApeKI	GCWGC	2 cut(s)	185, 219
ApoI	RAATTY	2 cut(s)	46, 656
AspLEI	GCGC	1 cut(s)	470
AspS9I	GGNCC	1 cut(s)	271
AsuHPI	GGTGA	3 cut(s)	407, 586, 619
BanI	GGYRCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	197
BauI	CACGAG	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	172, 231
BccI	CCATC	3 cut(s)	73, 493, 571
BceAI	ACGGC	1 cut(s)	609
BciT130I	CCWGG	1 cut(s)	431
BcoDI	GTCTC	3 cut(s)	365, 380, 398
BfoI	RGCGCY	1 cut(s)	471
BfuAI	ACCTGC	2 cut(s)	426, 595
BisI	GCNGC	3 cut(s)	167, 186, 220
BlsI	GCNGC	3 cut(s)	168, 187, 221
Bme1390I	CCNGG	1 cut(s)	431
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	3 cut(s)	273, 311, 469
BmrFI	CCNGG	1 cut(s)	431
BmrI	ACTGGG	2 cut(s)	21, 658
BmsI	GCATC	3 cut(s)	290, 621, 654
BmuI	ACTGGG	2 cut(s)	21, 658
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	611
BpuEI	CTTGAG	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 430, 464
Bse1I	ACTGG	4 cut(s)	27, 264, 594, 653
BseBI	CCWGG	1 cut(s)	431
BseCI	ATCGAT	1 cut(s)	68
BseGI	GGATG	4 cut(s)	295, 399, 636, 669
BseLI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
BseMII	CTCAG	2 cut(s)	167, 393
BseNI	ACTGG	4 cut(s)	27, 264, 594, 653
BseRI	GAGGAG	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	172, 231
BseYI	CCCAGC	1 cut(s)	485
BsgI	GTGCAG	2 cut(s)	158, 404
BshFI	GGCC	2 cut(s)	272, 550
BshNI	GGYRCC	1 cut(s)	467
BshVI	ATCGAT	1 cut(s)	68
BslFI	GGGAC	2 cut(s)	278, 628
BslI	CCNNNNNNNGG	3 cut(s)	157, 430, 464
BsmAI	GTCTC	3 cut(s)	365, 380, 398
BsmFI	GGGAC	2 cut(s)	278, 628
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	2 cut(s)	272, 550
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	211, 260
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	2 cut(s)	272, 550
BspCNI	CTCAG	2 cut(s)	166, 394
BspDI	ATCGAT	1 cut(s)	68
BspLI	GGNNCC	3 cut(s)	273, 311, 469
BspMI	ACCTGC	2 cut(s)	426, 595
BspPI	GGATC	2 cut(s)	219, 255
BspT107I	GGYRCC	1 cut(s)	467
BsrI	ACTGG	4 cut(s)	27, 264, 594, 653
BssMI	GATC	2 cut(s)	211, 260
BssNI	GRCGYC	1 cut(s)	468
BssSI	CACGAG	1 cut(s)	383
Bst2BI	CACGAG	1 cut(s)	383
Bst2UI	CCWGG	1 cut(s)	431
Bst4CI	ACNGT	2 cut(s)	302, 619
BstACI	GRCGYC	1 cut(s)	468
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	153, 285, 402
BstF5I	GGATG	4 cut(s)	295, 399, 636, 669
BstH2I	RGCGCY	1 cut(s)	471
BstHHI	GCGC	1 cut(s)	470
BstKTI	GATC	2 cut(s)	214, 263
BstMAI	GTCTC	3 cut(s)	365, 380, 398
BstMBI	GATC	2 cut(s)	211, 260
BstMWI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
BstNI	CCWGG	1 cut(s)	431
BstNSI	RCATGY	2 cut(s)	18, 586
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	172, 231
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	260
BstXI	CCANNNNNNTGG	1 cut(s)	339
BstYI	RGATCY	1 cut(s)	260
Bsu15I	ATCGAT	1 cut(s)	68
BsuRI	GGCC	2 cut(s)	272, 550
BsuTUI	ATCGAT	1 cut(s)	68
BtsCI	GGATG	4 cut(s)	295, 399, 636, 669
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	3 cut(s)	34, 211, 242
BveI	ACCTGC	2 cut(s)	426, 595
Cac8I	GCNNGC	1 cut(s)	584
CfoI	GCGC	1 cut(s)	470
Cfr13I	GGNCC	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	68
CseI	GACGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	18, 298
CviAII	CATG	7 cut(s)	15, 93, 141, 319, 390, 569, 583
CviQI	GTAC	2 cut(s)	18, 298
DdeI	CTNAG	3 cut(s)	153, 285, 402
DinI	GGCGCC	1 cut(s)	469
DpnI	GATC	2 cut(s)	213, 262
DpnII	GATC	2 cut(s)	211, 260
Eco24I	GRGCYC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	429
EcoT22I	ATGCAT	2 cut(s)	16, 98
EcoT38I	GRGCYC	1 cut(s)	197
EgeI	GGCGCC	1 cut(s)	469
EheI	GGCGCC	1 cut(s)	469
FaeI	CATG	7 cut(s)	18, 96, 144, 322, 393, 572, 586
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
FaqI	GGGAC	2 cut(s)	278, 628
FatI	CATG	7 cut(s)	14, 92, 140, 318, 389, 568, 582
Fnu4HI	GCNGC	3 cut(s)	167, 186, 220
FokI	GGATG	3 cut(s)	302, 406, 643
FriOI	GRGCYC	1 cut(s)	197
Fsp4HI	GCNGC	3 cut(s)	167, 186, 220
GlaI	GCGC	1 cut(s)	469
GluI	GCNGC	3 cut(s)	167, 186, 220
GsaI	CCCAGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	611
HaeII	RGCGCY	1 cut(s)	471
HaeIII	GGCC	2 cut(s)	272, 550
HgaI	GACGC	1 cut(s)	177
HhaI	GCGC	1 cut(s)	470
Hin1I	GRCGYC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	18, 96, 144, 322, 393, 572, 586
Hin6I	GCGC	1 cut(s)	468
HinP1I	GCGC	1 cut(s)	468
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	3 cut(s)	407, 586, 619
Hpy188I	TCNGA	2 cut(s)	156, 563
Hpy188III	TCNNGA	3 cut(s)	51, 496, 661
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	2 cut(s)	302, 619
HpyCH4V	TGCA	9 cut(s)	14, 75, 96, 175, 247, 421, 518, 604, 667
HpyF10VI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
HpyF3I	CTNAG	3 cut(s)	153, 285, 402
Hsp92I	GRCGYC	1 cut(s)	468
Hsp92II	CATG	7 cut(s)	18, 96, 144, 322, 393, 572, 586
HspAI	GCGC	1 cut(s)	468
KasI	GGCGCC	1 cut(s)	467
Kzo9I	GATC	2 cut(s)	211, 260
Lsp1109I	GCAGC	2 cut(s)	172, 231
LweI	GCATC	3 cut(s)	290, 621, 654
MalI	GATC	2 cut(s)	213, 262
MboI	GATC	2 cut(s)	211, 260
MboII	GAAGA	4 cut(s)	337, 439, 446, 550
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	197
MluCI	AATT	3 cut(s)	46, 528, 656
Mly113I	GGCGCC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	608
MnlI	CCTC	8 cut(s)	111, 162, 248, 285, 324, 339, 528, 561
Mph1103I	ATGCAT	2 cut(s)	16, 98
MseI	TTAA	1 cut(s)	371
MslI	CAYNNNNRTG	2 cut(s)	70, 180
MspA1I	CMGCKG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	431
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	172, 228, 278, 407
NarI	GGCGCC	1 cut(s)	468
NdeII	GATC	2 cut(s)	211, 260
NlaIII	CATG	7 cut(s)	18, 96, 144, 322, 393, 572, 586
NlaIV	GGNNCC	3 cut(s)	273, 311, 469
NsiI	ATGCAT	2 cut(s)	16, 98
NspI	RCATGY	2 cut(s)	18, 586
OliI	CACNNNNGTG	1 cut(s)	180
PaeI	GCATGC	1 cut(s)	586
PaqCI	CACCTGC	2 cut(s)	426, 595
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	429
PkrI	GCNGC	3 cut(s)	168, 187, 221
PluTI	GGCGCC	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	429
PspFI	CCCAGC	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	3 cut(s)	273, 311, 469
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	489
RsaI	GTAC	2 cut(s)	19, 299
RsaNI	GTAC	2 cut(s)	18, 298
RseI	CAYNNNNRTG	2 cut(s)	70, 180
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	3 cut(s)	167, 186, 220
Sau3AI	GATC	2 cut(s)	211, 260
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	3 cut(s)	420, 491, 609
SfaNI	GCATC	3 cut(s)	290, 621, 654
SfoI	GGCGCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	2 cut(s)	70, 180
SmlI	CTYRAG	1 cut(s)	276
SmoI	CTYRAG	1 cut(s)	276
SphI	GCATGC	1 cut(s)	586
Sse9I	AATT	3 cut(s)	46, 528, 656
SsiI	CCGC	1 cut(s)	167
SspDI	GGCGCC	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	2 cut(s)	302, 619
TaqI	TCGA	3 cut(s)	50, 68, 191
TasI	AATT	3 cut(s)	46, 528, 656
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TscAI	CASTG	3 cut(s)	34, 211, 249
TseI	GCWGC	2 cut(s)	185, 219
TspDTI	ATGAA	3 cut(s)	129, 338, 557
TspRI	CASTG	3 cut(s)	34, 211, 249
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	2 cut(s)	46, 656
XceI	RCATGY	2 cut(s)	18, 586
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
Zsp2I	ATGCAT	2 cut(s)	16, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.