Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

45992160 .. 45992828

Gene Structure 669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0307900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGACATGCAAAGTTTACTTCAAGAAAGGGCATAATAGATTGGGCTGCCTAATTACAAAGGGAAAGAAAGCAGCAGCACAACAAGCAGGAGAAGGGAGTTCCAATACAACCAAGAAAAATAAGAAGAGCTCAAGGCAGCAGGCAGCAAAAGTTCCAGCTTCAAAGGGGAGGCCCAGCTTGAATGATAATATCATCAAGTCTAGGAAGGGTTGGAAGAAGATGAAAACCATGGAGGGCAACCAAGGTGCCAATGCAAGGCCATCTAGTTCACAAACTAGGCATGATCCTCCAACACAAAGCAGCCAAAATCCTACAACAAAAAAGGCAAGGCACCAAGGCCAAACTGATTCTGAATGGCCAGGGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

122

Amino Acids

13.35

Weight (kDa)

10.7

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	245, 330
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	356
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	22, 162, 181
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	3 cut(s)	129, 158, 177
AluI	AGCT	3 cut(s)	129, 158, 177
Alw21I	GWGCWC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	278
AoxI	GGCC	4 cut(s)	170, 257, 337, 356
ApeKI	GCWGC	6 cut(s)	45, 71, 74, 136, 143, 300
AspS9I	GGNCC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	358
BanI	GGYRCC	2 cut(s)	245, 330
BanII	GRGCYC	1 cut(s)	131
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	6 cut(s)	32, 83, 86, 148, 155, 312
BccI	CCATC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	360
BfaI	CTAG	3 cut(s)	201, 264, 276
BisI	GCNGC	6 cut(s)	46, 72, 75, 137, 144, 301
BlsI	GCNGC	6 cut(s)	47, 73, 76, 138, 145, 302
Bme1390I	CCNGG	1 cut(s)	360
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	247, 332
BmrFI	CCNGG	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	228, 241, 334, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	360
BseDI	CCNNGG	4 cut(s)	228, 241, 334, 359
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseXI	GCAGC	6 cut(s)	32, 83, 86, 148, 155, 312
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	4 cut(s)	172, 259, 339, 358
BshNI	GGYRCC	2 cut(s)	245, 330
BsiHKAI	GWGCWC	1 cut(s)	131
BslI	CCNNNNNNNGG	1 cut(s)	255
BsnI	GGCC	4 cut(s)	172, 259, 339, 358
Bsp1286I	GDGCHC	1 cut(s)	131
Bsp143I	GATC	1 cut(s)	283
Bsp19I	CCATGG	1 cut(s)	228
BspANI	GGCC	4 cut(s)	172, 259, 339, 358
BspLI	GGNNCC	2 cut(s)	247, 332
BspPI	GGATC	1 cut(s)	278
BspQI	GCTCTTC	1 cut(s)	119
BspT107I	GGYRCC	2 cut(s)	245, 330
BssECI	CCNNGG	4 cut(s)	228, 241, 334, 359
BssMI	GATC	1 cut(s)	283
BssT1I	CCWWGG	3 cut(s)	228, 241, 334
Bst2UI	CCWGG	1 cut(s)	360
Bst6I	CTCTTC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	141
BstDSI	CCRYGG	1 cut(s)	228
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	1 cut(s)	360
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	358
BstV1I	GCAGC	6 cut(s)	32, 83, 86, 148, 155, 312
BsuRI	GGCC	4 cut(s)	172, 259, 339, 358
BtgI	CCRYGG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	141
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	3 cut(s)	6, 229, 281
CviJI	RGCY	9 cut(s)	45, 129, 158, 172, 177, 259, 303, 339, 358
CviKI_1	RGCY	9 cut(s)	45, 129, 158, 172, 177, 259, 303, 339, 358
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	356
Eam1104I	CTCTTC	1 cut(s)	119
EarI	CTCTTC	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	129
Eco130I	CCWWGG	3 cut(s)	228, 241, 334
Eco24I	GRGCYC	1 cut(s)	131
Eco53kI	GAGCTC	1 cut(s)	129
EcoICRI	GAGCTC	1 cut(s)	129
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	3 cut(s)	228, 241, 334
EcoT38I	GRGCYC	1 cut(s)	131
ErhI	CCWWGG	3 cut(s)	228, 241, 334
FaeI	CATG	3 cut(s)	9, 232, 284
FaiI	YATR	4 cut(s)	7, 33, 230, 282
FatI	CATG	3 cut(s)	5, 228, 280
Fnu4HI	GCNGC	6 cut(s)	46, 72, 75, 137, 144, 301
FriOI	GRGCYC	1 cut(s)	131
Fsp4HI	GCNGC	6 cut(s)	46, 72, 75, 137, 144, 301
FspBI	CTAG	3 cut(s)	201, 264, 276
GluI	GCNGC	6 cut(s)	46, 72, 75, 137, 144, 301
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	4 cut(s)	172, 259, 339, 358
Hin1II	CATG	3 cut(s)	9, 232, 284
HinfI	GANTC	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	16, 269
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	16, 269
HpyAV	CCTTC	2 cut(s)	86, 199
HpyCH4V	TGCA	2 cut(s)	9, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	9, 232, 284
Kzo9I	GATC	1 cut(s)	283
LguI	GCTCTTC	1 cut(s)	119
LpnPI	CCDG	5 cut(s)	72, 125, 168, 187, 345
Lsp1109I	GCAGC	6 cut(s)	32, 83, 86, 148, 155, 312
MaeI	CTAG	3 cut(s)	201, 264, 276
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	3 cut(s)	136, 226, 229
MhlI	GDGCHC	1 cut(s)	131
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	358
MmeI	TCCRAC	2 cut(s)	191, 314
MnlI	CCTC	3 cut(s)	162, 226, 297
Mox20I	TGGCCA	1 cut(s)	358
MscI	TGGCCA	1 cut(s)	358
Msp20I	TGGCCA	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	360
MwoI	GCNNNNNNNGC	1 cut(s)	83
NcoI	CCATGG	1 cut(s)	228
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	9, 232, 284
NlaIV	GGNNCC	2 cut(s)	247, 332
NspI	RCATGY	1 cut(s)	9
PciSI	GCTCTTC	1 cut(s)	119
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	6 cut(s)	47, 73, 76, 138, 145, 302
Psp124BI	GAGCTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	358
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	247, 332
PspPI	GGNCC	1 cut(s)	171
SacI	GAGCTC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	119
SatI	GCNGC	6 cut(s)	46, 72, 75, 137, 144, 301
Sau3AI	GATC	1 cut(s)	283
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	360
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	4 cut(s)	131, 160, 179, 247
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	51
SspMI	CTAG	3 cut(s)	201, 264, 276
SstI	GAGCTC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	358
StyI	CCWWGG	3 cut(s)	228, 241, 334
TasI	AATT	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	347
TseI	GCWGC	6 cut(s)	45, 71, 74, 136, 143, 300
TspDTI	ATGAA	1 cut(s)	236
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	3 cut(s)	201, 264, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.