Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

3840662 .. 3841449

Gene Structure 788 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGATATGCAGTAGCCCTGTGTTGTCATGCATTCCTCGATTTCAAAGTAAGAGTTCTTTTCAGTGCATCAGTTCATGGAGTTCTCTTCAGAAGCCCATTTTCCAGTGGGGATCATGGCAGCCTTTACGCACAATCCCCACACTACAAAGGCGAGGCAGATCTAGTATGCCCCCTCAAGCATATAAGGATAAGCCAAAGTGGTGGTGGTGGACATTAGCATGTCTCCCCTACTTAATGCTCCCACACGAGACATGGATGCATGCTGAGACTTTAGCCTATCACCTGCACCCTTTCCTGGAAGACTTTGAGTTCTTCCCATACCCATTTCTTGGCGCCATTGGGAGTTTGCCCAGCTGGTTCTTGATAGCATACTTTTTCGTTGCATATCTTGGAATTGTGAGGAACAAGGAGTGCCCTCACTTTTTCAGATTTTATGTGGTGATGGGCATGCTGCTGGTGATTGCCTTGCAGGTGATAGGGACTGTGAGCCGTTGGATGCCACTCTCTATTTACTGGGGTAAATTCGGGATGCACTTTCTGGACAGCCGTTGCATTTGCTTACCTATTTACAGCATTGGAGACTTGGACTCTTGGAGTGCATACACTGCTCTTTCTGGTATGTACGCTGATATCCCCTTTGTTTGTGATGCTGCATATATCAAATTCCCTATGACTAATAGGTCAAAGGAAAGGCATAGGAGAAAATCAGCTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

238

Amino Acids

27.87

Weight (kDa)

9.3

Isoelectric Point (pI)

63.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	60 - 218	1.5e-44	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	291, 460
AasI	GACNNNNNNGTC	1 cut(s)	679
Acc36I	ACCTGC	2 cut(s)	291, 460
AccB1I	GGYRCC	1 cut(s)	332
AccB7I	CCANNNNNTGG	1 cut(s)	329
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	2 cut(s)	521, 662
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	2 cut(s)	295, 329
AgsI	TTSAA	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	294
AluBI	AGCT	2 cut(s)	354, 710
AluI	AGCT	2 cut(s)	354, 710
Alw26I	GTCTC	4 cut(s)	227, 242, 260, 573
AlwI	GGATC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	118, 451, 650
ApoI	RAATTY	2 cut(s)	521, 662
AspLEI	GCGC	1 cut(s)	335
AsuHPI	GGTGA	4 cut(s)	272, 451, 469, 484
BaeGI	GKGCMC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	332
BauI	CACGAG	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	3 cut(s)	130, 438, 637
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	2 cut(s)	474, 531
BciT130I	CCWGG	1 cut(s)	296
BcoDI	GTCTC	4 cut(s)	227, 242, 260, 573
BfaI	CTAG	1 cut(s)	162
BfoI	RGCGCY	1 cut(s)	336
BfuAI	ACCTGC	2 cut(s)	291, 460
BglII	AGATCT	1 cut(s)	158
BisI	GCNGC	3 cut(s)	119, 452, 651
BlsI	GCNGC	3 cut(s)	120, 453, 652
Bme1390I	CCNGG	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	296
BmrI	ACTGGG	1 cut(s)	523
BmsI	GCATC	5 cut(s)	75, 246, 486, 519, 637
BmuI	ACTGGG	1 cut(s)	523
BpiI	GAAGAC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	159
BsaHI	GRCGYC	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	2 cut(s)	295, 329
Bse1I	ACTGG	2 cut(s)	103, 518
BseBI	CCWGG	1 cut(s)	296
BseGI	GGATG	3 cut(s)	261, 501, 534
BseLI	CCNNNNNNNGG	2 cut(s)	295, 329
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	103, 518
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	130, 438, 637
BseYI	CCCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	269
BshNI	GGYRCC	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	493
BslI	CCNNNNNNNGG	2 cut(s)	295, 329
BsmAI	GTCTC	4 cut(s)	227, 242, 260, 573
BsmFI	GGGAC	1 cut(s)	493
BsmI	GAATGC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	110, 158
BspCNI	CTCAG	1 cut(s)	256
BspLI	GGNNCC	1 cut(s)	334
BspMI	ACCTGC	2 cut(s)	291, 460
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	2 cut(s)	103, 518
BssMI	GATC	2 cut(s)	110, 158
BssNI	GRCGYC	1 cut(s)	333
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	484
Bst6I	CTCTTC	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	333
BstAPI	GCANNNNNTGC	1 cut(s)	605
BstC8I	GCNNGC	2 cut(s)	261, 449
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	3 cut(s)	261, 501, 534
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	113, 161
BstMAI	GTCTC	4 cut(s)	227, 242, 260, 573
BstMBI	GATC	2 cut(s)	110, 158
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	296
BstNSI	RCATGY	3 cut(s)	222, 263, 451
BstSCI	CCNGG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	130, 438, 637
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	158
BstXI	CCANNNNNNTGG	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	261, 501, 534
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	3 cut(s)	68, 110, 603
BveI	ACCTGC	2 cut(s)	291, 460
Cac8I	GCNNGC	2 cut(s)	261, 449
CfoI	GCGC	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	7 cut(s)	27, 75, 114, 219, 252, 260, 448
CviJI	RGCY	9 cut(s)	15, 94, 121, 193, 275, 354, 489, 546, 710
CviKI_1	RGCY	9 cut(s)	15, 94, 121, 193, 275, 354, 489, 546, 710
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	1 cut(s)	264
DinI	GGCGCC	1 cut(s)	334
DpnI	GATC	2 cut(s)	112, 160
DpnII	GATC	2 cut(s)	110, 158
DrdI	GACNNNNNNGTC	1 cut(s)	679
DseDI	GACNNNNNNGTC	1 cut(s)	679
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	631
EcoT22I	ATGCAT	2 cut(s)	32, 261
EgeI	GGCGCC	1 cut(s)	334
EheI	GGCGCC	1 cut(s)	334
FaeI	CATG	7 cut(s)	30, 78, 117, 222, 255, 263, 451
FaqI	GGGAC	1 cut(s)	493
FatI	CATG	7 cut(s)	26, 74, 113, 218, 251, 259, 447
Fnu4HI	GCNGC	3 cut(s)	119, 452, 651
FokI	GGATG	3 cut(s)	268, 508, 541
Fsp4HI	GCNGC	3 cut(s)	119, 452, 651
FspBI	CTAG	1 cut(s)	162
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	119, 452, 651
GsaI	CCCAGC	1 cut(s)	354
HaeII	RGCGCY	1 cut(s)	336
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	7 cut(s)	30, 78, 117, 222, 255, 263, 451
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HinfI	GANTC	1 cut(s)	587
HphI	GGTGA	4 cut(s)	272, 451, 469, 484
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	90, 428
Hpy188III	TCNNGA	3 cut(s)	361, 526, 539
Hpy8I	GTNNAC	1 cut(s)	210
HpyCH4III	ACNGT	1 cut(s)	484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	264
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	7 cut(s)	30, 78, 117, 222, 255, 263, 451
HspAI	GCGC	1 cut(s)	333
KasI	GGCGCC	1 cut(s)	332
Kzo9I	GATC	2 cut(s)	110, 158
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	3 cut(s)	130, 438, 637
LweI	GCATC	5 cut(s)	75, 246, 486, 519, 637
MaeI	CTAG	1 cut(s)	162
MalI	GATC	2 cut(s)	112, 160
MboI	GATC	2 cut(s)	110, 158
MboII	GAAGA	3 cut(s)	77, 304, 311
MflI	RGATCY	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	3 cut(s)	393, 521, 662
Mly113I	GGCGCC	1 cut(s)	333
MlyI	GAGTC	1 cut(s)	581
MmeI	TCCRAC	1 cut(s)	473
MnlI	CCTC	5 cut(s)	45, 146, 183, 393, 426
Mph1103I	ATGCAT	2 cut(s)	32, 261
MseI	TTAA	1 cut(s)	233
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	2 cut(s)	354, 710
MspR9I	CCNGG	1 cut(s)	296
Mva1269I	GAATGC	1 cut(s)	30
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	605
NarI	GGCGCC	1 cut(s)	333
NdeII	GATC	2 cut(s)	110, 158
NlaIII	CATG	7 cut(s)	30, 78, 117, 222, 255, 263, 451
NlaIV	GGNNCC	1 cut(s)	334
NsiI	ATGCAT	2 cut(s)	32, 261
NspI	RCATGY	3 cut(s)	222, 263, 451
PaeI	GCATGC	2 cut(s)	263, 451
PaqCI	CACCTGC	2 cut(s)	291, 460
PctI	GAATGC	1 cut(s)	30
PflMI	CCANNNNNTGG	1 cut(s)	329
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	3 cut(s)	120, 453, 652
PleI	GAGTC	1 cut(s)	581
PluTI	GGCGCC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	581
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	350
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	158
PvuII	CAGCTG	2 cut(s)	354, 710
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
RseI	CAYNNNNRTG	1 cut(s)	217
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	3 cut(s)	119, 452, 651
Sau3AI	GATC	2 cut(s)	110, 158
SchI	GAGTC	1 cut(s)	581
ScrFI	CCNGG	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	6 cut(s)	285, 356, 474, 565, 683, 712
SfaNI	GCATC	5 cut(s)	75, 246, 486, 519, 637
SfoI	GGCGCC	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	174
SmoI	CTYRAG	1 cut(s)	174
SphI	GCATGC	2 cut(s)	263, 451
Sse9I	AATT	3 cut(s)	393, 521, 662
SspDI	GGCGCC	1 cut(s)	332
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	484
TaqI	TCGA	1 cut(s)	37
TasI	AATT	3 cut(s)	393, 521, 662
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	3 cut(s)	68, 110, 610
TseI	GCWGC	3 cut(s)	118, 451, 650
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	3 cut(s)	68, 110, 610
Van91I	CCANNNNNTGG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	521, 662
XceI	RCATGY	3 cut(s)	222, 263, 451
XcmI	CCANNNNNNNNNTGG	2 cut(s)	201, 249
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	2 cut(s)	32, 261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.