Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034934.1

Orthogroup ID

OG0007156

Physical Location & Seq

Genomic Coordinates Forward (+)

15586 .. 17060

Gene Structure 1475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034934.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ctgtatcagcaaaaggtacttggctatgattccaaatgcatgtaccagacccagtgggtttatctctgtaaattcgagagtatttcatggagttcccctcagaaggctatgccgcttctgcacccccgtgctgcgtcgagcccatttttcagtggggatcaaggcagccttttacgcacaatccccacactgcaaaggcgaggcagatccagtatggcccctcaagcatctaaggatgtcccgtacagttttcggttccctcccatgatgaagaagccaaagtggtggtggaggacattggcttgtctcccctacttaatgcccctacacgagacatggatgtatgctgagacagcctatcacctgcaccctttcctggaagactttgagttcttcacatacccatttcttggcgccattgggagtttgcccagctggttcttgatggcatactttttcgttgcatatcttggaattgtgaggagaaaggagtggcctcacttcttcagatttcatgtggtgatgggcatgctactggagattgccttgcaggtgatagggactgtgagccgttggatgccacttgctatttactggggtaaattcgggatgcacttctggacagccgttgcatttgcttacctatttacagtgttggagtgcatacgctgtgctcttgctggtatgtacgctgatatcccctttgtttgtgatgctgcatatattcaaattccctatgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

247

Amino Acids

29.02

Weight (kDa)

9.07

Isoelectric Point (pI)

57.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04940
fragaria_vesca	FvH4_2g39340 FvH4_2g39340
malus_domestica	MD08G1024700.v1.1 MD15G1022400.v1.1
prunus_persica	Prupe.1G179600_v2.0.a1 Prupe.7G049100_v2.0.a1 Prupe.7G049100_v2.0.a1
pyrus_communis	pycom08g01960 pycom09g11730 pycom15g01870
rosa_chinensis	RchiOBHm_Chr6g0301671
rosa_laevigata	RLG00000011234
rosa_multiflora	Rmu_co8335489.1_g000001 Rmu_sc0034934.1_g000008
rosa_roxburghii	Rroxscaffold_7G00166550
rosa_rugosa	Rorug06G0307800 Rorug06G0307900
rosa_samantha	Rh6BG427000 Rh6CG433700 Rh6DG420300
rosa_wichuraiana	Rw3G014360 Rw5G003830 Rw6G017410 Rw6G036370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	372, 541
Acc36I	ACCTGC	2 cut(s)	372, 541
AccB1I	GGYRCC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	410
AciI	CCGC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	165, 201
AcsI	RAATTY	3 cut(s)	71, 602, 729
AcuI	CTGAAG	1 cut(s)	490
AcyI	GRCGYC	1 cut(s)	414
AfaI	GTAC	4 cut(s)	18, 44, 245, 689
AfiI	CCNNNNNNNGG	3 cut(s)	103, 376, 410
AgsI	TTSAA	1 cut(s)	728
AjnI	CCWGG	1 cut(s)	375
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	435
AluI	AGCT	1 cut(s)	435
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	3 cut(s)	311, 326, 344
AlwI	GGATC	2 cut(s)	165, 201
AoxI	GGCC	2 cut(s)	216, 494
ApeKI	GCWGC	3 cut(s)	131, 165, 716
ApoI	RAATTY	3 cut(s)	71, 602, 729
AspLEI	GCGC	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	3 cut(s)	353, 532, 565
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	387
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	3 cut(s)	118, 177, 703
BccI	CCATC	2 cut(s)	439, 517
BceAI	ACGGC	2 cut(s)	555, 611
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	3 cut(s)	311, 326, 344
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	372, 541
BisI	GCNGC	4 cut(s)	113, 132, 166, 717
BlsI	GCNGC	4 cut(s)	114, 133, 167, 718
Bme1390I	CCNGG	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	3 cut(s)	219, 257, 415
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	2 cut(s)	46, 604
BmsI	GCATC	4 cut(s)	236, 567, 600, 703
BmuI	ACTGGG	2 cut(s)	46, 604
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
BpmI	CTGGAG	1 cut(s)	557
BpuEI	CTTGAG	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	3 cut(s)	103, 376, 410
Bse1I	ACTGG	4 cut(s)	52, 210, 540, 599
BseBI	CCWGG	1 cut(s)	377
BseGI	GGATG	4 cut(s)	241, 345, 582, 615
BseLI	CCNNNNNNNGG	3 cut(s)	103, 376, 410
BseMII	CTCAG	2 cut(s)	113, 339
BseNI	ACTGG	4 cut(s)	52, 210, 540, 599
BseRI	GAGGAG	1 cut(s)	496
BseXI	GCAGC	3 cut(s)	118, 177, 703
BseYI	CCCAGC	1 cut(s)	431
BsgI	GTGCAG	2 cut(s)	104, 350
BshFI	GGCC	2 cut(s)	218, 496
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	676
BslFI	GGGAC	2 cut(s)	224, 574
BslI	CCNNNNNNNGG	3 cut(s)	103, 376, 410
BsmAI	GTCTC	3 cut(s)	311, 326, 344
BsmFI	GGGAC	2 cut(s)	224, 574
BsnI	GGCC	2 cut(s)	218, 496
Bsp1286I	GDGCHC	2 cut(s)	143, 676
Bsp143I	GATC	2 cut(s)	157, 206
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	2 cut(s)	218, 496
BspCNI	CTCAG	2 cut(s)	112, 340
BspLI	GGNNCC	3 cut(s)	219, 257, 415
BspMI	ACCTGC	2 cut(s)	372, 541
BspPI	GGATC	2 cut(s)	165, 201
BspT107I	GGYRCC	1 cut(s)	413
BsrI	ACTGG	4 cut(s)	52, 210, 540, 599
BssMI	GATC	2 cut(s)	157, 206
BssNI	GRCGYC	1 cut(s)	414
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	248, 565, 652
BstACI	GRCGYC	1 cut(s)	414
BstC8I	GCNNGC	1 cut(s)	530
BstDEI	CTNAG	3 cut(s)	99, 231, 348
BstF5I	GGATG	4 cut(s)	241, 345, 582, 615
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	1 cut(s)	416
BstKTI	GATC	2 cut(s)	160, 209
BstMAI	GTCTC	3 cut(s)	311, 326, 344
BstMBI	GATC	2 cut(s)	157, 206
BstMWI	GCNNNNNNNGC	4 cut(s)	118, 174, 224, 353
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	2 cut(s)	43, 532
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	3 cut(s)	118, 177, 703
BstV2I	GAAGAC	1 cut(s)	387
BstX2I	RGATCY	1 cut(s)	206
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	218, 496
BtsCI	GGATG	4 cut(s)	241, 345, 582, 615
BtsI	GCAGTG	1 cut(s)	188
BtsIMutI	CAGTG	4 cut(s)	59, 157, 188, 657
BveI	ACCTGC	2 cut(s)	372, 541
Cac8I	GCNNGC	1 cut(s)	530
CfoI	GCGC	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	217
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	4 cut(s)	17, 43, 244, 688
CviAII	CATG	6 cut(s)	40, 87, 265, 336, 515, 529
CviQI	GTAC	4 cut(s)	17, 43, 244, 688
DdeI	CTNAG	3 cut(s)	99, 231, 348
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	2 cut(s)	159, 208
DpnII	GATC	2 cut(s)	157, 206
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	697
Eco57I	CTGAAG	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	375
EcoRV	GATATC	1 cut(s)	697
EcoT22I	ATGCAT	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	143
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
FaeI	CATG	6 cut(s)	43, 90, 268, 339, 518, 532
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FaqI	GGGAC	2 cut(s)	224, 574
FatI	CATG	6 cut(s)	39, 86, 264, 335, 514, 528
Fnu4HI	GCNGC	4 cut(s)	113, 132, 166, 717
FokI	GGATG	4 cut(s)	248, 352, 589, 622
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	4 cut(s)	113, 132, 166, 717
GlaI	GCGC	1 cut(s)	415
GluI	GCNGC	4 cut(s)	113, 132, 166, 717
GsaI	CCCAGC	1 cut(s)	435
GsuI	CTGGAG	1 cut(s)	557
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	218, 496
HgaI	GACGC	1 cut(s)	123
HhaI	GCGC	1 cut(s)	416
Hin1I	GRCGYC	1 cut(s)	414
Hin1II	CATG	6 cut(s)	43, 90, 268, 339, 518, 532
Hin6I	GCGC	1 cut(s)	414
HinP1I	GCGC	1 cut(s)	414
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	3 cut(s)	353, 532, 565
Hpy188I	TCNGA	2 cut(s)	102, 509
Hpy188III	TCNNGA	4 cut(s)	76, 442, 607, 619
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	3 cut(s)	248, 565, 652
HpyF10VI	GCNNNNNNNGC	4 cut(s)	118, 174, 224, 353
HpyF3I	CTNAG	3 cut(s)	99, 231, 348
Hsp92I	GRCGYC	1 cut(s)	414
Hsp92II	CATG	6 cut(s)	43, 90, 268, 339, 518, 532
HspAI	GCGC	1 cut(s)	414
KasI	GGCGCC	1 cut(s)	413
Kzo9I	GATC	2 cut(s)	157, 206
Lsp1109I	GCAGC	3 cut(s)	118, 177, 703
LweI	GCATC	4 cut(s)	236, 567, 600, 703
MalI	GATC	2 cut(s)	159, 208
MboI	GATC	2 cut(s)	157, 206
MboII	GAAGA	4 cut(s)	283, 385, 392, 496
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	2 cut(s)	143, 676
MluCI	AATT	4 cut(s)	71, 474, 602, 729
Mly113I	GGCGCC	1 cut(s)	414
MmeI	TCCRAC	2 cut(s)	554, 636
MnlI	CCTC	7 cut(s)	108, 194, 231, 270, 285, 474, 507
Mph1103I	ATGCAT	1 cut(s)	41
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	435
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	4 cut(s)	118, 174, 224, 353
NarI	GGCGCC	1 cut(s)	414
NdeII	GATC	2 cut(s)	157, 206
NlaIII	CATG	6 cut(s)	43, 90, 268, 339, 518, 532
NlaIV	GGNNCC	3 cut(s)	219, 257, 415
NsiI	ATGCAT	1 cut(s)	41
NspI	RCATGY	2 cut(s)	43, 532
OliI	CACNNNNGTG	1 cut(s)	126
PaeI	GCATGC	1 cut(s)	532
PaqCI	CACCTGC	2 cut(s)	372, 541
PfeI	GAWTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	410
PfoI	TCCNGGA	1 cut(s)	375
PkrI	GCNGC	4 cut(s)	114, 133, 167, 718
PluTI	GGCGCC	1 cut(s)	417
Psp6I	CCWGG	1 cut(s)	375
PspFI	CCCAGC	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	3 cut(s)	219, 257, 415
PspPI	GGNCC	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	435
RsaI	GTAC	4 cut(s)	18, 44, 245, 689
RsaNI	GTAC	4 cut(s)	17, 43, 244, 688
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	4 cut(s)	113, 132, 166, 717
Sau3AI	GATC	2 cut(s)	157, 206
Sau96I	GGNCC	1 cut(s)	217
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	143, 676
SetI	ASST	5 cut(s)	18, 366, 437, 555, 645
SfaNI	GCATC	4 cut(s)	236, 567, 600, 703
SfoI	GGCGCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	4 cut(s)	71, 474, 602, 729
SsiI	CCGC	1 cut(s)	113
SspDI	GGCGCC	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	248, 565, 652
TaqI	TCGA	2 cut(s)	75, 137
TasI	AATT	4 cut(s)	71, 474, 602, 729
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	4 cut(s)	59, 157, 195, 657
TseI	GCWGC	3 cut(s)	131, 165, 716
TspDTI	ATGAA	3 cut(s)	75, 284, 503
TspRI	CASTG	4 cut(s)	59, 157, 195, 657
Van91I	CCANNNNNTGG	1 cut(s)	410
XapI	RAATTY	3 cut(s)	71, 602, 729
XceI	RCATGY	2 cut(s)	43, 532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	285
Zsp2I	ATGCAT	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.