FvH4_2g39690

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0008478
Physical Location & Seq
Reverse (-)
28431376 .. 28433740
2365 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g39690.t1

Sequence Viewer

Length: 1050 bp
ATGAGAACGCAAGACAATGAAATGAGGACGTCAGGCTCTGCAGCCCTGAGCTATGGTGGCACTCATTTGACCAAGGAATCATCGGGAGGCGGAGAGAAAAGAAGGCTTGGAAATATTCATAATGGTACTCCCGCTGGCCTCTCTGCTTTCACTGCCAATCACCAAACCCTAGACCACCACCACCACCCTCTTCAGCCTCACCATGCTCAAGTGGTTCAACCAGTCCCACTACCCACAAGAGATCCAGATCCAGATCGAGTCATCGCCTCCAACGCACTTGTACCCAGTAGTGCTGTGGCCAGGTCCAAGACACCAACGTTAGCAACAGCCAGCAACGTTCGCTACCGAGAATGTCTGAAAAACCACGCGGCCAACATCGGCGGCAATGTCTTCGACGGCTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACACTTGAAGCTTTGAAATGCGCGGCTTGTGATTGTCACAGGAACTTCCACCGTAAGGAGGTTGACGGCGAGACGATGACGCCGTTCGGTCACGGGTCTAGATCACGAAGCATAATGCTCAGCCCTATCCAGCTCCCTCCGCCGCTGCCGTCACCTCACCACCGTCACCAGAAGTTCTCTATCGTTCAACCCATGAGCGTGGCTTTCGGAGGCAGCGGAGGAGGAGGAGGAGGAGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGCGGATGGAATAGGAGGTGGGGTGGCGCCGCCGTATAGCTTGTCGAAGAAGAGGTTCAGGACGAAGTTCACGGCGGAGCAGAAGGTGAGGATGGTGGAGTTTGCGGAGAAAGTGGGGTGGAGGATTCAGAAGCAGGATGAGGAGGATGTGGAGAGGTTCTGTGATGAGGTGGGAGTCAAGAGGCAGGTGCTGAGGGTTTGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATAATGTTGAAGCTCATGAACAACAGCCAGGAGGTCAAGGAGGAACAACAGACACATGA

Protein Analysis

350

Amino Acids

37.98

Weight (kDa)

6.87

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 112 - 165 2.7e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 727
AccII CGCG 2 cut(s) 368, 455
AclI AACGTT 3 cut(s) 317, 336, 690
AclWI GGATC 3 cut(s) 236, 242, 690
AcoI YGGCCR 2 cut(s) 297, 369
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 3 cut(s) 29, 512, 728
AfaI GTAC 2 cut(s) 127, 282
AfiI CCNNNNNNNGG 2 cut(s) 487, 490
AgsI TTSAA 5 cut(s) 218, 440, 448, 620, 1001
AjnI CCWGG 2 cut(s) 299, 1018
AluBI AGCT 6 cut(s) 51, 443, 565, 741, 979, 1004
AluI AGCT 6 cut(s) 51, 443, 565, 741, 979, 1004
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 3 cut(s) 236, 242, 690
AlwNI CAGNNNCTG 2 cut(s) 38, 892
AoxI GGCC 3 cut(s) 136, 297, 369
ApeKI GCWGC 5 cut(s) 41, 399, 577, 645, 937
Asp700I GAANNNNTTC 2 cut(s) 692, 755
AspLEI GCGC 2 cut(s) 455, 730
AspS9I GGNCC 1 cut(s) 303
AsuHPI GGTGA 7 cut(s) 152, 191, 576, 581, 590, 799, 952
AvaII GGWCC 1 cut(s) 303
BalI TGGCCA 1 cut(s) 299
BanI GGYRCC 1 cut(s) 727
BbsI GAAGAC 2 cut(s) 382, 663
BbvCI CCTCAGC 1 cut(s) 893
BbvI GCAGC 5 cut(s) 53, 386, 564, 657, 949
BccI CCATC 2 cut(s) 701, 787
BceAI ACGGC 6 cut(s) 412, 499, 514, 565, 718, 789
BcgI CGANNNNNNTGC 2 cut(s) 373, 407
BciT130I CCWGG 2 cut(s) 301, 1020
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 2 cut(s) 170, 531
BfmI CTRYAG 1 cut(s) 39
BfoI RGCGCY 1 cut(s) 731
BfuAI ACCTGC 1 cut(s) 877
BlpI GCTNAGC 1 cut(s) 551
Bme1390I CCNGG 2 cut(s) 301, 1020
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 1 cut(s) 303
BmiI GGNNCC 1 cut(s) 729
BmrFI CCNGG 2 cut(s) 301, 1020
BmrI ACTGGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 894, 924
BmuI ACTGGG 1 cut(s) 279
BpiI GAAGAC 2 cut(s) 382, 663
Bpu10I CCTNAGC 2 cut(s) 47, 893
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 192
BsaBI GATNNNNATC 2 cut(s) 246, 252
BsaHI GRCGYC 3 cut(s) 29, 512, 728
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 708, 738
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 490
Bse1I ACTGG 2 cut(s) 221, 285
Bse3DI GCAATG 1 cut(s) 391
Bse8I GATNNNNATC 2 cut(s) 246, 252
BseBI CCWGG 2 cut(s) 301, 1020
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 5 cut(s) 712, 798, 844, 853, 909
BseJI GATNNNNATC 2 cut(s) 246, 252
BseLI CCNNNNNNNGG 2 cut(s) 487, 490
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 3 cut(s) 38, 565, 884
BseNI ACTGG 2 cut(s) 221, 285
BseRI GAGGAG 6 cut(s) 666, 669, 672, 675, 678, 857
BseXI GCAGC 5 cut(s) 53, 386, 564, 657, 949
Bsh1236I CGCG 2 cut(s) 368, 455
BshFI GGCC 3 cut(s) 138, 299, 371
BshNI GGYRCC 1 cut(s) 727
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 487, 490
BsmAI GTCTC 1 cut(s) 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 209
BsnI GGCC 3 cut(s) 138, 299, 371
Bsp143I GATC 5 cut(s) 241, 247, 253, 533, 682
Bsp1720I GCTNAGC 1 cut(s) 551
BspANI GGCC 3 cut(s) 138, 299, 371
BspCNI CTCAG 3 cut(s) 39, 564, 885
BspFNI CGCG 2 cut(s) 368, 455
BspHI TCATGA 1 cut(s) 1006
BspLI GGNNCC 1 cut(s) 729
BspMAI CTGCAG 1 cut(s) 43
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 3 cut(s) 236, 242, 690
BspT107I GGYRCC 1 cut(s) 727
BsrDI GCAATG 1 cut(s) 391
BsrI ACTGG 2 cut(s) 221, 285
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 5 cut(s) 241, 247, 253, 533, 682
BssNI GRCGYC 3 cut(s) 29, 512, 728
BssT1I CCWWGG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 301, 1020
Bst4CI ACNGT 3 cut(s) 485, 596, 925
Bst6I CTCTTC 2 cut(s) 195, 746
BstACI GRCGYC 3 cut(s) 29, 512, 728
BstC8I GCNNGC 3 cut(s) 136, 331, 981
BstDEI CTNAG 3 cut(s) 47, 551, 893
BstF5I GGATG 5 cut(s) 712, 798, 844, 853, 909
BstFNI CGCG 2 cut(s) 368, 455
BstH2I RGCGCY 1 cut(s) 731
BstHHI GCGC 2 cut(s) 455, 730
BstKTI GATC 5 cut(s) 244, 250, 256, 536, 685
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 5 cut(s) 241, 247, 253, 533, 682
BstMWI GCNNNNNNNGC 5 cut(s) 57, 152, 272, 339, 571
BstNI CCWGG 2 cut(s) 301, 1020
BstSCI CCNGG 2 cut(s) 299, 1018
BstSFI CTRYAG 1 cut(s) 39
BstUI CGCG 2 cut(s) 368, 455
BstV1I GCAGC 5 cut(s) 53, 386, 564, 657, 949
BstV2I GAAGAC 2 cut(s) 382, 663
BstX2I RGATCY 3 cut(s) 241, 247, 682
BstXI CCANNNNNNTGG 1 cut(s) 631
BstYI RGATCY 3 cut(s) 241, 247, 682
BsuRI GGCC 3 cut(s) 138, 299, 371
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 5 cut(s) 712, 798, 844, 853, 909
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 930
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 3 cut(s) 136, 331, 981
CaiI CAGNNNCTG 2 cut(s) 38, 892
CciI TCATGA 1 cut(s) 1006
CfoI GCGC 2 cut(s) 455, 730
Cfr13I GGNCC 1 cut(s) 303
CseI GACGC 1 cut(s) 520
Csp6I GTAC 2 cut(s) 126, 281
CviAII CATG 8 cut(s) 203, 412, 625, 941, 947, 953, 1007, 1047
CviQI GTAC 2 cut(s) 126, 281
DdeI CTNAG 3 cut(s) 47, 551, 893
DinI GGCGCC 1 cut(s) 729
DpnI GATC 5 cut(s) 243, 249, 255, 535, 684
DpnII GATC 5 cut(s) 241, 247, 253, 533, 682
EaeI YGGCCR 2 cut(s) 297, 369
Eam1104I CTCTTC 2 cut(s) 195, 746
EarI CTCTTC 2 cut(s) 195, 746
EciI GGCGGA 3 cut(s) 105, 561, 791
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 303
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 2 cut(s) 299, 1018
EcoT14I CCWWGG 1 cut(s) 72
EgeI GGCGCC 1 cut(s) 729
EheI GGCGCC 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 72
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 8 cut(s) 206, 415, 628, 944, 950, 956, 1010, 1050
FalI AAGNNNNNCTT 2 cut(s) 420, 452
FaqI GGGAC 1 cut(s) 209
FatI CATG 8 cut(s) 202, 411, 624, 940, 946, 952, 1006, 1046
FauI CCCGC 1 cut(s) 139
FokI GGATG 5 cut(s) 719, 805, 851, 860, 916
FspBI CTAG 2 cut(s) 170, 531
GlaI GCGC 2 cut(s) 454, 729
HaeII RGCGCY 1 cut(s) 731
HaeIII GGCC 3 cut(s) 138, 299, 371
HgaI GACGC 1 cut(s) 520
HhaI GCGC 2 cut(s) 455, 730
Hin1I GRCGYC 3 cut(s) 29, 512, 728
Hin1II CATG 8 cut(s) 206, 415, 628, 944, 950, 956, 1010, 1050
Hin6I GCGC 2 cut(s) 453, 728
HinP1I GCGC 2 cut(s) 453, 728
HincII GTYRAC 1 cut(s) 496
HindII GTYRAC 1 cut(s) 496
HindIII AAGCTT 1 cut(s) 441
HinfI GANTC 5 cut(s) 77, 258, 668, 826, 876
HphI GGTGA 7 cut(s) 152, 191, 576, 581, 590, 799, 952
Hpy166II GTNNAC 2 cut(s) 496, 771
Hpy188I TCNGA 4 cut(s) 357, 641, 687, 831
Hpy188III TCNNGA 8 cut(s) 84, 245, 251, 531, 537, 760, 880, 1007
Hpy8I GTNNAC 2 cut(s) 496, 771
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 3 cut(s) 96, 422, 778
HpyCH4III ACNGT 3 cut(s) 485, 596, 925
HpyCH4IV ACGT 4 cut(s) 29, 317, 336, 690
HpyCH4V TGCA 3 cut(s) 41, 907, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 57, 152, 272, 339, 571
HpyF3I CTNAG 3 cut(s) 47, 551, 893
HpySE526I ACGT 4 cut(s) 29, 317, 336, 690
Hsp92I GRCGYC 3 cut(s) 29, 512, 728
Hsp92II CATG 8 cut(s) 206, 415, 628, 944, 950, 956, 1010, 1050
HspAI GCGC 2 cut(s) 453, 728
KasI GGCGCC 1 cut(s) 727
Kzo9I GATC 5 cut(s) 241, 247, 253, 533, 682
LmnI GCTCC 2 cut(s) 570, 778
Lsp1109I GCAGC 5 cut(s) 53, 386, 564, 657, 949
LweI GCATC 2 cut(s) 894, 924
MaeI CTAG 2 cut(s) 170, 531
MaeII ACGT 4 cut(s) 29, 317, 336, 690
MaeIII GTNAC 4 cut(s) 467, 521, 582, 596
MalI GATC 5 cut(s) 243, 249, 255, 535, 684
MboI GATC 5 cut(s) 241, 247, 253, 533, 682
MboII GAAGA 7 cut(s) 182, 382, 663, 760, 763, 940, 943
MflI RGATCY 3 cut(s) 241, 247, 682
MlsI TGGCCA 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 299
Mly113I GGCGCC 1 cut(s) 728
MlyI GAGTC 3 cut(s) 267, 677, 885
MmeI TCCRAC 1 cut(s) 294
Mox20I TGGCCA 1 cut(s) 299
MroXI GAANNNNTTC 2 cut(s) 692, 755
MscI TGGCCA 1 cut(s) 299
MslI CAYNNNNRTG 3 cut(s) 629, 945, 951
Msp20I TGGCCA 1 cut(s) 299
MspA1I CMGCKG 4 cut(s) 134, 577, 648, 979
MspR9I CCNGG 2 cut(s) 301, 1020
MvaI CCWGG 2 cut(s) 301, 1020
MvnI CGCG 2 cut(s) 368, 455
MwoI GCNNNNNNNGC 5 cut(s) 57, 152, 272, 339, 571
NarI GGCGCC 1 cut(s) 728
NdeII GATC 5 cut(s) 241, 247, 253, 533, 682
NlaIII CATG 8 cut(s) 206, 415, 628, 944, 950, 956, 1010, 1050
NlaIV GGNNCC 1 cut(s) 729
NmuCI GTSAC 4 cut(s) 467, 521, 582, 596
PagI TCATGA 1 cut(s) 1006
PaqCI CACCTGC 1 cut(s) 877
PcsI WCGNNNNNNNCGW 1 cut(s) 512
PdmI GAANNNNTTC 2 cut(s) 692, 755
PfeI GAWTC 2 cut(s) 77, 826
PleI GAGTC 3 cut(s) 266, 676, 884
PluTI GGCGCC 1 cut(s) 731
PpsI GAGTC 3 cut(s) 266, 676, 884
Psp1406I AACGTT 3 cut(s) 317, 336, 690
Psp6I CCWGG 2 cut(s) 299, 1018
PspGI CCWGG 2 cut(s) 299, 1018
PspN4I GGNNCC 1 cut(s) 729
PspPI GGNCC 1 cut(s) 303
PstI CTGCAG 1 cut(s) 43
PstNI CAGNNNCTG 2 cut(s) 38, 892
PsuI RGATCY 3 cut(s) 241, 247, 682
PvuII CAGCTG 1 cut(s) 979
RsaI GTAC 2 cut(s) 127, 282
RsaNI GTAC 2 cut(s) 126, 281
RseI CAYNNNNRTG 3 cut(s) 629, 945, 951
Sau3AI GATC 5 cut(s) 241, 247, 253, 533, 682
Sau96I GGNCC 1 cut(s) 303
SchI GAGTC 3 cut(s) 267, 677, 885
ScrFI CCNGG 2 cut(s) 301, 1020
SfaNI GCATC 2 cut(s) 894, 924
SfcI CTRYAG 1 cut(s) 39
SfoI GGCGCC 1 cut(s) 729
SinI GGWCC 1 cut(s) 303
SmiMI CAYNNNNRTG 3 cut(s) 629, 945, 951
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SspDI GGCGCC 1 cut(s) 727
SspI AATATT 1 cut(s) 115
SspMI CTAG 2 cut(s) 170, 531
StyD4I CCNGG 2 cut(s) 299, 1018
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 3 cut(s) 485, 596, 925
TaiI ACGT 4 cut(s) 32, 320, 339, 693
TaqI TCGA 5 cut(s) 256, 393, 674, 696, 746
TaqII GACCGA 1 cut(s) 509
TauI GCSGC 6 cut(s) 371, 384, 423, 458, 577, 733
TfiI GAWTC 2 cut(s) 77, 826
TscAI CASTG 2 cut(s) 157, 930
TseFI GTSAC 4 cut(s) 467, 521, 582, 596
TseI GCWGC 5 cut(s) 41, 399, 577, 645, 937
Tsp45I GTSAC 4 cut(s) 467, 521, 582, 596
TspDTI ATGAA 4 cut(s) 33, 107, 400, 1023
TspRI CASTG 2 cut(s) 157, 930
VpaK11BI GGWCC 1 cut(s) 303
XbaI TCTAGA 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 292, 976
XmnI GAANNNNTTC 2 cut(s) 692, 755
XspI CTAG 2 cut(s) 170, 531
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.