MD08G1030700.v1.1

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0008478
Physical Location & Seq
Reverse (-)
2193400 .. 2195131
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1030700.v1.1.491

Sequence Viewer

Length: 1038 bp
ATGGATTTTAGGGCACAAGATAACGAAATGAGGACGTCAGGCTCGCTAAGCTATGCTCATTTAAATACCAAAGAATCATCGCCGTCGCCAGCGGCAGCAGCAGATCACCAGCAAAAGAGAAGAGTTGGGATTCACAATGGTACTGGGAATTACGGTTCTGCCACTGCTCCTCATCACCAGCACCAAACCCTAGACAACCACCACCCAGCTGCTATCCCGTTGCAGCCGTTGATCCGCGACCCAGATCCGGATCGTGCCCTATCCGGGACCCCGGTGGCCCCACATGAAGCCGGAGTCGGTGGCGGTGGTGGTGGGCCCAAGTCGTTGGCAAAAGTTGTTAGGTATAGAGAGTGCCTCAAGAACCACGCGGCGAACATTGGTGGTAATGTCTTCGACGGCTGCGGAGAGTTCATGCCGAGCGGCCAGGAGGGGACGATGGAGGCTTTGAAATGTGCGGCGTGCGACTGCCACCGCAACTTTCACCGCAAGGAGGTGGACGGGGAGACGGCGGCCTTCAGTCCCGGCTCGAGAAGGTCGAGCATAATGCTGAGTCCGCTTCAGCTTCCGCCGCCGCTGCCTTCGCCTTCCTCGGCTTTGCACCATCACCACCACCACCACCACCACCAGAAGTACGCGATGCCTCCGATTGTCCAGCCTGTGAACGTGGCGTTCGGGAGCAGCGGTGGAGGGACGGAGAGTTCGAGCGAGGATCTGAATGCTTTTGAGGGTGGAACTGTCCCGCCGTTTGCTTTGTCTAAGAAGCGGTTTCGGACAAAGTTCACGGTGGAACAGAAGGAGAGGATGATGGAGTTTGGGGAGAAGGTTGGGTGGAGAATTCAGAAGCAGGATGAGGAGGAGGTGGAGAGGTTTTGTGCGGAGGTGGGAGTGAAGAGGCAGGTGCTTAGGGTTTGGATGCATAACAACAAAAACACCATTAAGAAGCAGGGTGACGTCACTGCTACTACTAATGCCATCGCTTTGTCTTTTAAGAATGTGGAGGGAGAAGGAGGGGAGGGAGGGGCAGCAGCTGAAGATTAA

Protein Analysis

346

Amino Acids

37.33

Weight (kDa)

7.09

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 113 - 165 1.1e-30 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 886
AatII GACGTC 2 cut(s) 38, 954
Acc36I ACCTGC 1 cut(s) 886
AccBSI CCGCTC 1 cut(s) 420
AccII CGCG 3 cut(s) 237, 368, 635
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 4 cut(s) 226, 239, 258, 717
AcoI YGGCCR 1 cut(s) 421
AcsI RAATTY 1 cut(s) 834
AcuI CTGAAG 2 cut(s) 499, 542
AcyI GRCGYC 2 cut(s) 35, 951
AfaI GTAC 2 cut(s) 142, 632
AfiI CCNNNNNNNGG 3 cut(s) 247, 264, 490
AgsI TTSAA 1 cut(s) 448
AjnI CCWGG 1 cut(s) 423
AloI GAACNNNNNNTCC 4 cut(s) 139, 171, 682, 714
AluBI AGCT 4 cut(s) 51, 209, 562, 1028
AluI AGCT 4 cut(s) 51, 209, 562, 1028
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 4 cut(s) 226, 239, 258, 717
AlwNI CAGNNNCTG 1 cut(s) 1028
Ama87I CYCGRG 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 4 cut(s) 276, 314, 421, 510
ApaI GGGCCC 1 cut(s) 318
ApeKI GCWGC 9 cut(s) 95, 98, 209, 223, 399, 574, 678, 1022, 1025
ApoI RAATTY 1 cut(s) 834
ArsI GACNNNNNNTTYG 2 cut(s) 682, 714
AspS9I GGNCC 4 cut(s) 267, 277, 314, 315
AsuC2I CCSGG 3 cut(s) 265, 272, 522
AsuHPI GGTGA 5 cut(s) 98, 167, 473, 596, 959
AvaI CYCGRG 1 cut(s) 526
AvaII GGWCC 1 cut(s) 267
BaeGI GKGCMC 3 cut(s) 16, 259, 318
BanII GRGCYC 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 382
BbvI GCAGC 8 cut(s) 107, 110, 196, 235, 386, 561, 690, 1034
BccI CCATC 4 cut(s) 430, 609, 799, 980
BceAI ACGGC 5 cut(s) 67, 211, 412, 522, 727
BcgI CGANNNNNNTGC 2 cut(s) 526, 560
BciT130I CCWGG 1 cut(s) 425
BcnI CCSGG 3 cut(s) 265, 272, 522
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 886
BlpI GCTNAGC 1 cut(s) 47
Bme1390I CCNGG 4 cut(s) 265, 272, 425, 522
Bme18I GGWCC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 526
BmgT120I GGNCC 4 cut(s) 267, 277, 314, 315
BmiI GGNNCC 4 cut(s) 268, 269, 279, 316
BmrFI CCNGG 4 cut(s) 265, 272, 425, 522
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 2 cut(s) 627, 903
BmuI ACTGGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 382
BplI GAGNNNNNCTC 2 cut(s) 339, 371
Bpu10I CCTNAGC 1 cut(s) 902
Bpu1102I GCTNAGC 1 cut(s) 47
BpuEI CTTGAG 1 cut(s) 341
BpuMI CCSGG 3 cut(s) 265, 272, 522
BsaBI GATNNNNATC 1 cut(s) 249
BsaHI GRCGYC 2 cut(s) 35, 951
BsaJI CCNNGG 2 cut(s) 270, 588
BsaWI WCCGGW 1 cut(s) 247
BsaXI ACNNNNNCTCC 2 cut(s) 667, 697
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 264, 490
Bse1I ACTGG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 249
BseAI TCCGGA 1 cut(s) 247
BseBI CCWGG 1 cut(s) 425
BseDI CCNNGG 2 cut(s) 270, 588
BseGI GGATG 3 cut(s) 807, 853, 918
BseJI GATNNNNATC 1 cut(s) 249
BseLI CCNNNNNNNGG 3 cut(s) 247, 264, 490
BseMII CTCAG 1 cut(s) 539
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 3 cut(s) 159, 866, 869
BseSI GKGCMC 3 cut(s) 16, 259, 318
BseXI GCAGC 8 cut(s) 107, 110, 196, 235, 386, 561, 690, 1034
BseYI CCCAGC 1 cut(s) 205
Bsh1236I CGCG 3 cut(s) 237, 368, 635
BshFI GGCC 4 cut(s) 278, 316, 423, 512
BsiHKCI CYCGRG 1 cut(s) 526
BsiSI CCGG 5 cut(s) 248, 264, 272, 291, 522
BslFI GGGAC 5 cut(s) 280, 445, 504, 703, 722
BslI CCNNNNNNNGG 3 cut(s) 247, 264, 490
BsmAI GTCTC 1 cut(s) 497
BsmBI CGTCTC 1 cut(s) 497
BsmFI GGGAC 5 cut(s) 280, 445, 504, 703, 722
BsmI GAATGC 1 cut(s) 721
BsnI GGCC 4 cut(s) 278, 316, 423, 512
BsoBI CYCGRG 1 cut(s) 526
Bsp120I GGGCCC 1 cut(s) 314
Bsp1286I GDGCHC 3 cut(s) 16, 259, 318
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 5 cut(s) 103, 231, 244, 250, 709
Bsp1720I GCTNAGC 1 cut(s) 47
BspANI GGCC 4 cut(s) 278, 316, 423, 512
BspCNI CTCAG 1 cut(s) 540
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 3 cut(s) 237, 368, 635
BspLI GGNNCC 4 cut(s) 268, 269, 279, 316
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 4 cut(s) 226, 239, 258, 717
BsrBI CCGCTC 1 cut(s) 420
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 270, 588
BssMI GATC 5 cut(s) 103, 231, 244, 250, 709
BssNI GRCGYC 2 cut(s) 35, 951
Bst2UI CCWGG 1 cut(s) 425
Bst4CI ACNGT 3 cut(s) 155, 736, 784
Bst6I CTCTTC 2 cut(s) 115, 884
BstACI GRCGYC 2 cut(s) 35, 951
BstC8I GCNNGC 3 cut(s) 44, 90, 460
BstDEI CTNAG 4 cut(s) 47, 548, 756, 902
BstF5I GGATG 3 cut(s) 807, 853, 918
BstFNI CGCG 3 cut(s) 237, 368, 635
BstKTI GATC 5 cut(s) 106, 234, 247, 253, 712
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 5 cut(s) 103, 231, 244, 250, 709
BstMWI GCNNNNNNNGC 6 cut(s) 48, 98, 553, 568, 574, 580
BstNI CCWGG 1 cut(s) 425
BstSCI CCNGG 4 cut(s) 263, 270, 423, 520
BstSLI GKGCMC 3 cut(s) 16, 259, 318
BstUI CGCG 3 cut(s) 237, 368, 635
BstV1I GCAGC 8 cut(s) 107, 110, 196, 235, 386, 561, 690, 1034
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 2 cut(s) 244, 709
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 2 cut(s) 244, 709
BsuRI GGCC 4 cut(s) 278, 316, 423, 512
BtgZI GCGATG 3 cut(s) 63, 650, 958
BtsCI GGATG 3 cut(s) 807, 853, 918
BtsI GCAGTG 2 cut(s) 162, 954
BtsIMutI CAGTG 2 cut(s) 162, 954
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 3 cut(s) 44, 90, 460
CaiI CAGNNNCTG 1 cut(s) 1028
Cfr13I GGNCC 4 cut(s) 267, 277, 314, 315
Csp6I GTAC 2 cut(s) 141, 631
CviAII CATG 2 cut(s) 284, 412
CviQI GTAC 2 cut(s) 141, 631
DdeI CTNAG 4 cut(s) 47, 548, 756, 902
DpnI GATC 5 cut(s) 105, 233, 246, 252, 711
DpnII GATC 5 cut(s) 103, 231, 244, 250, 709
DraI TTTAAA 1 cut(s) 63
EaeI YGGCCR 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 115, 884
EarI CTCTTC 2 cut(s) 115, 884
EciI GGCGGA 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 267
Eco57I CTGAAG 2 cut(s) 499, 542
Eco88I CYCGRG 1 cut(s) 526
EcoO109I RGGNCCY 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 834
EcoRII CCWGG 1 cut(s) 423
EcoT22I ATGCAT 1 cut(s) 918
EcoT38I GRGCYC 1 cut(s) 318
Esp3I CGTCTC 1 cut(s) 497
FaeI CATG 2 cut(s) 287, 415
FaiI YATR 6 cut(s) 54, 285, 345, 413, 542, 918
FaqI GGGAC 5 cut(s) 280, 445, 504, 703, 722
FatI CATG 2 cut(s) 283, 411
FauI CCCGC 1 cut(s) 747
FokI GGATG 3 cut(s) 814, 860, 925
FriOI GRGCYC 1 cut(s) 318
FspBI CTAG 1 cut(s) 191
GsaI CCCAGC 1 cut(s) 209
HaeIII GGCC 4 cut(s) 278, 316, 423, 512
HapII CCGG 5 cut(s) 248, 264, 272, 291, 522
Hin1I GRCGYC 2 cut(s) 35, 951
Hin1II CATG 2 cut(s) 287, 415
HinfI GANTC 4 cut(s) 74, 130, 294, 550
HpaII CCGG 5 cut(s) 248, 264, 272, 291, 522
HphI GGTGA 5 cut(s) 98, 167, 473, 596, 959
Hpy166II GTNNAC 3 cut(s) 496, 661, 780
Hpy188I TCNGA 4 cut(s) 645, 714, 771, 840
Hpy188III TCNNGA 4 cut(s) 248, 358, 528, 673
Hpy8I GTNNAC 3 cut(s) 496, 661, 780
Hpy99I CGWCG 2 cut(s) 88, 398
HpyAV CCTTC 7 cut(s) 523, 525, 588, 594, 787, 814, 998
HpyCH4III ACNGT 3 cut(s) 155, 736, 784
HpyCH4IV ACGT 3 cut(s) 35, 663, 951
HpyCH4V TGCA 3 cut(s) 223, 598, 916
HpyF10VI GCNNNNNNNGC 6 cut(s) 48, 98, 553, 568, 574, 580
HpyF3I CTNAG 4 cut(s) 47, 548, 756, 902
HpySE526I ACGT 3 cut(s) 35, 663, 951
Hsp92I GRCGYC 2 cut(s) 35, 951
Hsp92II CATG 2 cut(s) 287, 415
KflI GGGWCCC 1 cut(s) 267
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 5 cut(s) 103, 231, 244, 250, 709
LmnI GCTCC 2 cut(s) 172, 675
Lsp1109I GCAGC 8 cut(s) 107, 110, 196, 235, 386, 561, 690, 1034
LweI GCATC 2 cut(s) 627, 903
MaeI CTAG 1 cut(s) 191
MaeII ACGT 3 cut(s) 35, 663, 951
MaeIII GTNAC 2 cut(s) 947, 952
MalI GATC 5 cut(s) 105, 233, 246, 252, 711
MbiI CCGCTC 1 cut(s) 420
MboI GATC 5 cut(s) 103, 231, 244, 250, 709
MboII GAAGA 3 cut(s) 132, 382, 901
MflI RGATCY 2 cut(s) 244, 709
MhlI GDGCHC 3 cut(s) 16, 259, 318
MluCI AATT 2 cut(s) 148, 834
MlyI GAGTC 2 cut(s) 303, 559
Mph1103I ATGCAT 1 cut(s) 918
MroI TCCGGA 1 cut(s) 247
MseI TTAA 4 cut(s) 62, 936, 987, 1036
MspA1I CMGCKG 5 cut(s) 92, 209, 574, 681, 1028
MspI CCGG 5 cut(s) 248, 264, 272, 291, 522
MspR9I CCNGG 4 cut(s) 265, 272, 425, 522
Mva1269I GAATGC 1 cut(s) 721
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 3 cut(s) 237, 368, 635
MwoI GCNNNNNNNGC 6 cut(s) 48, 98, 553, 568, 574, 580
NciI CCSGG 3 cut(s) 265, 272, 522
NdeII GATC 5 cut(s) 103, 231, 244, 250, 709
NlaIII CATG 2 cut(s) 287, 415
NlaIV GGNNCC 4 cut(s) 268, 269, 279, 316
NmeAIII GCCGAG 2 cut(s) 441, 569
NmuCI GTSAC 2 cut(s) 947, 952
NsiI ATGCAT 1 cut(s) 918
PaeR7I CTCGAG 1 cut(s) 526
PaqCI CACCTGC 1 cut(s) 886
PcsI WCGNNNNNNNCGW 2 cut(s) 533, 698
PctI GAATGC 1 cut(s) 721
PfeI GAWTC 2 cut(s) 74, 130
PfoI TCCNGGA 1 cut(s) 263
PleI GAGTC 2 cut(s) 302, 558
PpsI GAGTC 2 cut(s) 302, 558
PpuMI RGGWCCY 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 423
PspFI CCCAGC 1 cut(s) 205
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 4 cut(s) 268, 269, 279, 316
PspOMI GGGCCC 1 cut(s) 314
PspPI GGNCC 4 cut(s) 267, 277, 314, 315
PspPPI RGGWCCY 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 2 cut(s) 244, 709
PvuII CAGCTG 2 cut(s) 209, 1028
RsaI GTAC 2 cut(s) 142, 632
RsaNI GTAC 2 cut(s) 141, 631
SaqAI TTAA 4 cut(s) 62, 936, 987, 1036
Sau3AI GATC 5 cut(s) 103, 231, 244, 250, 709
Sau96I GGNCC 4 cut(s) 267, 277, 314, 315
SchI GAGTC 2 cut(s) 303, 559
ScrFI CCNGG 4 cut(s) 265, 272, 425, 522
SduI GDGCHC 3 cut(s) 16, 259, 318
SfaNI GCATC 2 cut(s) 627, 903
Sfr274I CTCGAG 1 cut(s) 526
SinI GGWCC 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 526
SmiI ATTTAAAT 1 cut(s) 63
SmlI CTYRAG 2 cut(s) 356, 526
SmoI CTYRAG 2 cut(s) 356, 526
Sse9I AATT 2 cut(s) 148, 834
SspMI CTAG 1 cut(s) 191
StyD4I CCNGG 4 cut(s) 263, 270, 423, 520
SwaI ATTTAAAT 1 cut(s) 63
TaaI ACNGT 3 cut(s) 155, 736, 784
TaiI ACGT 3 cut(s) 38, 666, 954
TaqI TCGA 4 cut(s) 393, 527, 536, 701
TasI AATT 2 cut(s) 148, 834
TauI GCSGC 7 cut(s) 95, 371, 423, 458, 512, 571, 574
TfiI GAWTC 2 cut(s) 74, 130
Tru1I TTAA 4 cut(s) 62, 936, 987, 1036
Tru9I TTAA 4 cut(s) 62, 936, 987, 1036
TscAI CASTG 2 cut(s) 169, 961
TseFI GTSAC 2 cut(s) 947, 952
TseI GCWGC 9 cut(s) 95, 98, 209, 223, 399, 574, 678, 1022, 1025
Tsp45I GTSAC 2 cut(s) 947, 952
TspDTI ATGAA 2 cut(s) 300, 400
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 2 cut(s) 169, 961
VpaK11BI GGWCC 1 cut(s) 267
XapI RAATTY 1 cut(s) 834
XhoI CTCGAG 1 cut(s) 526
XspI CTAG 1 cut(s) 191
ZraI GACGTC 2 cut(s) 36, 952
Zsp2I ATGCAT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.