Rh6CG430000

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0008478
Physical Location & Seq
Forward (+)
61092007 .. 61094198
2192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG430000.1

Sequence Viewer

Length: 1038 bp
ATGGATTTTAGAACGCAAGACAATGAAATGAGGACGTCAGGTTCTGCTTTGAGCTATGGTGGCACTCATTTAACCAAGGAATCATCGGGAGGTGGAGAAAAAAGAAGACTTGGAAATATTCACAATGGCACTCCTACTGCCCTCTCTGCTTTCACTGCTACCCACCAAACCCTAGACCACCATCACCCTCTTCAACCACACCATGTTCAACCAGTGCCACTAACAACCAGAGATCTAGATCCAGATCGAGTCGGCTCCACTGCAGTTGCACCCAGTGGTGGTGTTTTGTCGGGTGGGCCCAAGTCCAAGACACCATCGTCGACATCCACAACCAGCAACGTCCGCTACCGAGAATGTCTCAAGAACCACGCAGCCAACATCGGCGGTAACGTGTTCGACGGGTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACCCTCGAAGCTCTGAAATGCGCGGCTTGTGATTGCCACAGGAACTTCCACCGTAAGGAGGTGGACGGCGAGACGACGCCGTTCGGGCCCGGCTCCAGATCAAGAAGCATAATGCTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCCTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGTGTGGCTTTCGGAGGGGGGACGGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGAGGGGTGGTGCCGCCCTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTTCACGCCGGAGCAGAAGGTGAGGATGGTGGAGTTTGCGGAGCGAGTCGGGTGGAGAATTCAGAAGCAGGATGAGGAGGATGTGGAGAAGTTTTGTGATGAGGTGGGAGTGAAGAGGCAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGTCAAGAAGGAGGAGGGACAGACACATAA

Protein Analysis

345

Amino Acids

37.58

Weight (kDa)

6.55

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 113 - 166 2.6e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
AasI GACNNNNNNGTC 1 cut(s) 316
AatII GACGTC 1 cut(s) 38
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 320
AccII CGCG 1 cut(s) 458
AclI AACGTT 1 cut(s) 690
AclWI GGATC 2 cut(s) 233, 690
AcsI RAATTY 2 cut(s) 620, 825
AcyI GRCGYC 2 cut(s) 35, 512
AdeI CACNNNGTG 1 cut(s) 275
AfiI CCNNNNNNNGG 3 cut(s) 278, 490, 493
AflIII ACRYGT 1 cut(s) 390
AgsI TTSAA 4 cut(s) 194, 209, 635, 992
AjnI CCWGG 1 cut(s) 1006
AloI GAACNNNNNNTCC 2 cut(s) 25, 57
AluBI AGCT 6 cut(s) 54, 446, 565, 741, 973, 995
AluI AGCT 6 cut(s) 54, 446, 565, 741, 973, 995
Alw26I GTCTC 2 cut(s) 362, 500
AlwI GGATC 2 cut(s) 233, 690
AlwNI CAGNNNCTG 2 cut(s) 44, 892
AoxI GGCC 2 cut(s) 296, 521
ApaI GGGCCC 2 cut(s) 300, 525
ApeKI GCWGC 2 cut(s) 371, 937
ApoI RAATTY 2 cut(s) 620, 825
ArsI GACNNNNNNTTYG 2 cut(s) 655, 687
Asp700I GAANNNNTTC 2 cut(s) 692, 755
AspLEI GCGC 1 cut(s) 458
AspS9I GGNCC 5 cut(s) 296, 297, 521, 522, 762
AsuC2I CCSGG 1 cut(s) 525
AsuHPI GGTGA 3 cut(s) 176, 799, 946
AvaII GGWCC 1 cut(s) 762
BaeGI GKGCMC 2 cut(s) 300, 525
BanI GGYRCC 1 cut(s) 727
BanII GRGCYC 3 cut(s) 300, 525, 557
BbsI GAAGAC 2 cut(s) 112, 663
BbvCI CCTCAGC 1 cut(s) 893
BbvI GCAGC 2 cut(s) 383, 949
BccI CCATC 4 cut(s) 189, 322, 701, 787
BceAI ACGGC 2 cut(s) 499, 517
BciT130I CCWGG 1 cut(s) 1008
BcnI CCSGG 1 cut(s) 525
BcoDI GTCTC 2 cut(s) 362, 500
BfaI CTAG 2 cut(s) 173, 236
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 232
BisI GCNGC 6 cut(s) 372, 424, 459, 575, 731, 938
BlpI GCTNAGC 1 cut(s) 551
BlsI GCNGC 6 cut(s) 373, 425, 460, 576, 732, 939
Bme1390I CCNGG 2 cut(s) 525, 1008
Bme18I GGWCC 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 296, 297, 521, 522, 762
BmiI GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 729
BmrFI CCNGG 2 cut(s) 525, 1008
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 894, 924
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 2 cut(s) 112, 663
BplI GAGNNNNNCTC 2 cut(s) 342, 374
BpmI CTGGAG 2 cut(s) 514, 545
Bpu10I CCTNAGC 1 cut(s) 893
Bpu1102I GCTNAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 344
BpuMI CCSGG 1 cut(s) 525
BsaBI GATNNNNATC 2 cut(s) 237, 243
BsaHI GRCGYC 2 cut(s) 35, 512
BsaJI CCNNGG 2 cut(s) 75, 591
BsaXI ACNNNNNCTCC 4 cut(s) 708, 711, 738, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 278, 490, 493
Bse1I ACTGG 2 cut(s) 212, 273
Bse8I GATNNNNATC 2 cut(s) 237, 243
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 2 cut(s) 75, 591
BseGI GGATG 6 cut(s) 323, 712, 798, 844, 853, 909
BseJI GATNNNNATC 2 cut(s) 237, 243
BseLI CCNNNNNNNGG 3 cut(s) 278, 490, 493
BseMII CTCAG 2 cut(s) 542, 884
BseNI ACTGG 2 cut(s) 212, 273
BseRI GAGGAG 3 cut(s) 732, 857, 1035
BseSI GKGCMC 2 cut(s) 300, 525
BseXI GCAGC 2 cut(s) 383, 949
Bsh1236I CGCG 1 cut(s) 458
BshFI GGCC 2 cut(s) 298, 523
BshNI GGYRCC 1 cut(s) 727
BsiSI CCGG 2 cut(s) 525, 776
BslFI GGGAC 1 cut(s) 676
BslI CCNNNNNNNGG 3 cut(s) 278, 490, 493
BsmAI GTCTC 2 cut(s) 362, 500
BsmBI CGTCTC 1 cut(s) 500
BsmFI GGGAC 1 cut(s) 676
BsnI GGCC 2 cut(s) 298, 523
Bsp120I GGGCCC 2 cut(s) 296, 521
Bsp1286I GDGCHC 3 cut(s) 300, 525, 557
Bsp143I GATC 5 cut(s) 232, 238, 244, 533, 682
Bsp1720I GCTNAGC 1 cut(s) 551
BspANI GGCC 2 cut(s) 298, 523
BspCNI CTCAG 2 cut(s) 543, 885
BspFNI CGCG 1 cut(s) 458
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 729
BspMAI CTGCAG 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 2 cut(s) 233, 690
BspT107I GGYRCC 1 cut(s) 727
BsrI ACTGG 2 cut(s) 212, 273
BssECI CCNNGG 2 cut(s) 75, 591
BssMI GATC 5 cut(s) 232, 238, 244, 533, 682
BssNI GRCGYC 2 cut(s) 35, 512
BssT1I CCWWGG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 488, 925
Bst6I CTCTTC 2 cut(s) 195, 875
BstACI GRCGYC 2 cut(s) 35, 512
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 2 cut(s) 551, 893
BstF5I GGATG 6 cut(s) 323, 712, 798, 844, 853, 909
BstFNI CGCG 1 cut(s) 458
BstHHI GCGC 1 cut(s) 458
BstKTI GATC 5 cut(s) 235, 241, 247, 536, 685
BstMAI GTCTC 2 cut(s) 362, 500
BstMBI GATC 5 cut(s) 232, 238, 244, 533, 682
BstMWI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
BstNI CCWGG 1 cut(s) 1008
BstSCI CCNGG 2 cut(s) 523, 1006
BstSFI CTRYAG 1 cut(s) 261
BstSLI GKGCMC 2 cut(s) 300, 525
BstUI CGCG 1 cut(s) 458
BstV1I GCAGC 2 cut(s) 383, 949
BstV2I GAAGAC 2 cut(s) 112, 663
BstX2I RGATCY 3 cut(s) 232, 238, 682
BstXI CCANNNNNNTGG 1 cut(s) 646
BstYI RGATCY 3 cut(s) 232, 238, 682
BsuRI GGCC 2 cut(s) 298, 523
BtsCI GGATG 6 cut(s) 323, 712, 798, 844, 853, 909
BtsI GCAGTG 2 cut(s) 153, 258
BtsIMutI CAGTG 5 cut(s) 153, 219, 258, 280, 930
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 1 cut(s) 975
CaiI CAGNNNCTG 2 cut(s) 44, 892
CciI TCATGA 1 cut(s) 997
CfoI GCGC 1 cut(s) 458
Cfr13I GGNCC 5 cut(s) 296, 297, 521, 522, 762
CseI GACGC 1 cut(s) 520
CsiI ACCWGGT 1 cut(s) 1006
CspCI CAANNNNNGTGG 2 cut(s) 247, 282
CviAII CATG 6 cut(s) 203, 415, 640, 941, 947, 998
DdeI CTNAG 2 cut(s) 551, 893
DpnI GATC 5 cut(s) 234, 240, 246, 535, 684
DpnII GATC 5 cut(s) 232, 238, 244, 533, 682
DraIII CACNNNGTG 1 cut(s) 275
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 195, 875
EarI CTCTTC 2 cut(s) 195, 875
EciI GGCGGA 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 75
Eco24I GRGCYC 3 cut(s) 300, 525, 557
Eco47I GGWCC 1 cut(s) 762
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 75
EcoT38I GRGCYC 3 cut(s) 300, 525, 557
ErhI CCWWGG 1 cut(s) 75
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 6 cut(s) 206, 418, 643, 944, 950, 1001
FaqI GGGAC 1 cut(s) 676
FatI CATG 6 cut(s) 202, 414, 639, 940, 946, 997
FblI GTMKAC 1 cut(s) 320
Fnu4HI GCNGC 6 cut(s) 372, 424, 459, 575, 731, 938
FokI GGATG 6 cut(s) 310, 719, 805, 851, 860, 916
FriOI GRGCYC 3 cut(s) 300, 525, 557
Fsp4HI GCNGC 6 cut(s) 372, 424, 459, 575, 731, 938
FspBI CTAG 2 cut(s) 173, 236
GlaI GCGC 1 cut(s) 457
GluI GCNGC 6 cut(s) 372, 424, 459, 575, 731, 938
GsuI CTGGAG 2 cut(s) 514, 545
HaeIII GGCC 2 cut(s) 298, 523
HapII CCGG 2 cut(s) 525, 776
HgaI GACGC 1 cut(s) 520
HhaI GCGC 1 cut(s) 458
Hin1I GRCGYC 2 cut(s) 35, 512
Hin1II CATG 6 cut(s) 206, 418, 643, 944, 950, 1001
Hin6I GCGC 1 cut(s) 456
HinP1I GCGC 1 cut(s) 456
HincII GTYRAC 1 cut(s) 321
HindII GTYRAC 1 cut(s) 321
HinfI GANTC 4 cut(s) 80, 249, 668, 813
HpaII CCGG 2 cut(s) 525, 776
HphI GGTGA 3 cut(s) 176, 799, 946
Hpy166II GTNNAC 3 cut(s) 321, 499, 771
Hpy188I TCNGA 4 cut(s) 450, 656, 687, 831
Hpy8I GTNNAC 3 cut(s) 321, 499, 771
Hpy99I CGWCG 3 cut(s) 322, 401, 514
HpyAV CCTTC 3 cut(s) 425, 778, 1010
HpyCH4III ACNGT 2 cut(s) 488, 925
HpyCH4IV ACGT 4 cut(s) 35, 339, 390, 690
HpyCH4V TGCA 4 cut(s) 263, 269, 907, 937
HpyF10VI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
HpyF3I CTNAG 2 cut(s) 551, 893
HpySE526I ACGT 4 cut(s) 35, 339, 390, 690
Hsp92I GRCGYC 2 cut(s) 35, 512
Hsp92II CATG 6 cut(s) 206, 418, 643, 944, 950, 1001
HspAI GCGC 1 cut(s) 456
Kzo9I GATC 5 cut(s) 232, 238, 244, 533, 682
LmnI GCTCC 5 cut(s) 260, 533, 570, 778, 808
Lsp1109I GCAGC 2 cut(s) 383, 949
LweI GCATC 2 cut(s) 894, 924
MabI ACCWGGT 1 cut(s) 1006
MaeI CTAG 2 cut(s) 173, 236
MaeII ACGT 4 cut(s) 35, 339, 390, 690
MaeIII GTNAC 1 cut(s) 386
MalI GATC 5 cut(s) 234, 240, 246, 535, 684
MboI GATC 5 cut(s) 232, 238, 244, 533, 682
MboII GAAGA 8 cut(s) 117, 182, 663, 760, 892, 940, 943, 1013
MflI RGATCY 3 cut(s) 232, 238, 682
MhlI GDGCHC 3 cut(s) 300, 525, 557
MluCI AATT 2 cut(s) 620, 825
MlyI GAGTC 3 cut(s) 258, 677, 822
MroXI GAANNNNTTC 2 cut(s) 692, 755
MseI TTAA 1 cut(s) 71
MslI CAYNNNNRTG 2 cut(s) 644, 945
MspA1I CMGCKG 1 cut(s) 973
MspI CCGG 2 cut(s) 525, 776
MspR9I CCNGG 2 cut(s) 525, 1008
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 458
MwoI GCNNNNNNNGC 6 cut(s) 60, 146, 155, 342, 520, 571
NciI CCSGG 1 cut(s) 525
NdeII GATC 5 cut(s) 232, 238, 244, 533, 682
NlaIII CATG 6 cut(s) 206, 418, 643, 944, 950, 1001
NlaIV GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 729
NmeAIII GCCGAG 1 cut(s) 572
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 877
PcsI WCGNNNNNNNCGW 2 cut(s) 387, 671
PdmI GAANNNNTTC 2 cut(s) 692, 755
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 667
PkrI GCNGC 6 cut(s) 373, 425, 460, 576, 732, 939
PleI GAGTC 3 cut(s) 257, 676, 821
PpsI GAGTC 3 cut(s) 257, 676, 821
Psp1406I AACGTT 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 1006
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 6 cut(s) 256, 298, 436, 523, 529, 729
PspOMI GGGCCC 2 cut(s) 296, 521
PspPI GGNCC 5 cut(s) 296, 297, 521, 522, 762
PstI CTGCAG 1 cut(s) 265
PstNI CAGNNNCTG 2 cut(s) 44, 892
PsuI RGATCY 3 cut(s) 232, 238, 682
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 973
RseI CAYNNNNRTG 2 cut(s) 644, 945
SalI GTCGAC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 71
SatI GCNGC 6 cut(s) 372, 424, 459, 575, 731, 938
Sau3AI GATC 5 cut(s) 232, 238, 244, 533, 682
Sau96I GGNCC 5 cut(s) 296, 297, 521, 522, 762
SchI GAGTC 3 cut(s) 258, 677, 822
ScrFI CCNGG 2 cut(s) 525, 1008
SduI GDGCHC 3 cut(s) 300, 525, 557
SexAI ACCWGGT 1 cut(s) 1006
SfaNI GCATC 2 cut(s) 894, 924
SfcI CTRYAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 762
SmiMI CAYNNNNRTG 2 cut(s) 644, 945
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 2 cut(s) 620, 825
SspI AATATT 1 cut(s) 118
SspMI CTAG 2 cut(s) 173, 236
StyD4I CCNGG 2 cut(s) 523, 1006
StyI CCWWGG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 488, 925
TaiI ACGT 4 cut(s) 38, 342, 393, 693
TaqI TCGA 8 cut(s) 247, 320, 396, 441, 626, 674, 696, 746
TasI AATT 2 cut(s) 620, 825
TauI GCSGC 4 cut(s) 426, 461, 577, 733
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 1 cut(s) 71
Tru9I TTAA 1 cut(s) 71
TscAI CASTG 5 cut(s) 160, 219, 265, 280, 930
TseI GCWGC 2 cut(s) 371, 937
TspDTI ATGAA 3 cut(s) 39, 403, 1014
TspGWI ACGGA 2 cut(s) 576, 680
TspRI CASTG 5 cut(s) 160, 219, 265, 280, 930
Tth111I GACNNNGTC 1 cut(s) 667
VpaK11BI GGWCC 1 cut(s) 762
XapI RAATTY 2 cut(s) 620, 825
XbaI TCTAGA 1 cut(s) 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 320
XmnI GAANNNNTTC 2 cut(s) 692, 755
XspI CTAG 2 cut(s) 173, 236
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.