Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008478

Physical Location & Seq

Genomic Coordinates Reverse (-)

34184622 .. 34186811

Gene Structure 2190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G378200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTTTAAGGCATCAGTTATGGATTTTAGAGCACAACCCCAAGATAACGAAATGAGGACGTCAGGCTCTTTGAGCTACGCTTCTTCTGCTCATCATTTAAGTACCAAAGAATCATCACCCGCAGCAGCAGCAGCAGCAGCAGATCATCAAAAGAGAAGGGTTGGGATTCACAATGGCAACAACACTTACGCTACCAGCCCCCATCAAACCCTAGACCACCACATTCAACACCCACACCCACCTTTGCAACCCCTCATCCGAGACCCAGATCCAGATCGAGCCCTAGCCGGAACGCCAGTTCCGTCAACTGTACTCGCCAGTGGTGGGCCCAAGTCGACTTCAAAGATCATCCGCTACAGAGAGTGCCTCAAGAACCACGCGGCCAACATAGGCGGCAATGTGTTTGATGGATGCGGCGAGTTCATGCCAAGCGGTGAGGAAGGAACGCTGGAAGCTCTGAAATGCGCCGCATGTGATTGCCACCGCAACTTCCACCGAAAGGAGGTGGACGGGGAAACGACGGCGTTCAGCCACGGGTCCAGACGCTCAAGCATAATGCTGAGCCCTCTCCAACTCCCCCCGCCTCTGCCGTCTCCTTCGTCGGCTCTCCACCATCACCACCACCACCATCAGAAATTCTCAATGGCTCCGATTATCCAGCCGATGAATGTGGCGTTCGGGAGCGGTGGAGGAGGGACGGAGTCTTCCAGCGAGGATCTGAACGTGTTCCAGTCGAACAATGCGGAGGGGGGATTGCCAATGCCGCCGTTTGCGATGTCGAAGAAGCGGTTTCGTACAAAGTTCACGCAGGAGCAGAAGGAGAGGATGATGGAGTTTGCAGAGAAGGTGGGGTGGAGGATTCAGAAGCAAGATGAGGAGGAGGTGGAGAGGTTTTGCGCAGAGGTGGGCGTGAAGAGGCAGGTGCTGAGGGTTTGGATGCATAACAACAAGAACAGTGCCAAGAAGCAGAGTGATATTCTGACCACCCCCACAACAACAAGTCTGTCTTTTGAGAACGTTGAAGCTGAAGAAGAAGGAGGAGGGGAGGGAGGGAGGGACAACAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

356

Amino Acids

38.93

Weight (kDa)

6.88

Isoelectric Point (pI)

65.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18350
fragaria_vesca	FvH4_2g39690
malus_domestica	MD08G1030700.v1.1 MD15G1025900.v1.1
prunus_persica	Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1
pyrus_communis	pycom08g02410 pycom15g02210
rosa_chinensis	RchiOBHm_Chr6g0301181
rosa_laevigata	RLG00000011270
rosa_multiflora	Rmu_co8134984.1_g000001 Rmu_co8298157.1_g000001 Rmu_sc0002592.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441370 Rroxscaffold_7G00167010 Rroxscaffold_7G00167070
rosa_rugosa	Rorug06G0302100
rosa_samantha	Rh6AG415500 Rh6BG422400 Rh6CG430000 Rh6DG415300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	910
AatII	GACGTC	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	898
Acc36I	ACCTGC	1 cut(s)	910
AccBSI	CCGCTC	1 cut(s)	684
AccI	GTMKAC	1 cut(s)	335
AccII	CGCG	1 cut(s)	380
AclI	AACGTT	1 cut(s)	1017
AclWI	GGATC	2 cut(s)	263, 723
AcoI	YGGCCR	1 cut(s)	381
AcsI	RAATTY	1 cut(s)	635
AcuI	CTGAAG	1 cut(s)	1047
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	3 cut(s)	103, 312, 796
AfiI	CCNNNNNNNGG	3 cut(s)	324, 499, 502
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	3 cut(s)	227, 342, 1022
AloI	GAACNNNNNNTCC	4 cut(s)	282, 283, 314, 315
AluBI	AGCT	4 cut(s)	75, 455, 1025, 1065
AluI	AGCT	4 cut(s)	75, 455, 1025, 1065
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	255, 597
AlwI	GGATC	2 cut(s)	263, 723
AlwNI	CAGNNNCTG	1 cut(s)	925
AoxI	GGCC	2 cut(s)	326, 381
ApaI	GGGCCC	1 cut(s)	330
ApeKI	GCWGC	6 cut(s)	122, 125, 128, 131, 134, 137
ApoI	RAATTY	1 cut(s)	635
Asp700I	GAANNNNTTC	1 cut(s)	725
AspLEI	GCGC	2 cut(s)	467, 899
AspS9I	GGNCC	3 cut(s)	326, 327, 537
AsuHPI	GGTGA	3 cut(s)	108, 446, 608
AvaII	GGWCC	1 cut(s)	537
BaeGI	GKGCMC	1 cut(s)	330
BanII	GRGCYC	3 cut(s)	283, 330, 566
BbsI	GAAGAC	1 cut(s)	696
Bbv12I	GWGCWC	1 cut(s)	34
BbvCI	CCTCAGC	1 cut(s)	926
BbvI	GCAGC	6 cut(s)	134, 137, 140, 143, 146, 149
BccI	CCATC	5 cut(s)	210, 401, 621, 636, 823
BceAI	ACGGC	3 cut(s)	537, 574, 751
BcoDI	GTCTC	2 cut(s)	255, 597
BfaI	CTAG	2 cut(s)	212, 284
BfmI	CTRYAG	1 cut(s)	355
BfuAI	ACCTGC	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	560
Bme18I	GGWCC	1 cut(s)	537
BmgT120I	GGNCC	3 cut(s)	326, 327, 537
BmiI	GGNNCC	3 cut(s)	328, 538, 648
BmsI	GCATC	3 cut(s)	20, 401, 927
BpiI	GAAGAC	1 cut(s)	696
BplI	GAGNNNNNCTC	2 cut(s)	351, 383
Bpu10I	CCTNAGC	1 cut(s)	926
Bpu1102I	GCTNAGC	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	353, 532
BsaBI	GATNNNNATC	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	532
Bsc4I	CCNNNNNNNGG	3 cut(s)	324, 499, 502
Bse1I	ACTGG	3 cut(s)	296, 318, 730
Bse3DI	GCAATG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	5 cut(s)	255, 348, 416, 831, 942
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	324, 499, 502
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	551, 917
BseNI	ACTGG	3 cut(s)	296, 318, 730
BseRI	GAGGAG	4 cut(s)	705, 890, 893, 1053
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	6 cut(s)	134, 137, 140, 143, 146, 149
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	328, 383
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	288
BslFI	GGGAC	1 cut(s)	709
BslI	CCNNNNNNNGG	3 cut(s)	324, 499, 502
BsmAI	GTCTC	2 cut(s)	255, 597
BsmBI	CGTCTC	1 cut(s)	597
BsmFI	GGGAC	1 cut(s)	709
BsnI	GGCC	2 cut(s)	328, 383
Bso31I	GGTCTC	1 cut(s)	255
Bsp120I	GGGCCC	1 cut(s)	326
Bsp1286I	GDGCHC	4 cut(s)	34, 283, 330, 566
Bsp143I	GATC	5 cut(s)	142, 268, 274, 345, 715
Bsp1720I	GCTNAGC	1 cut(s)	560
BspANI	GGCC	2 cut(s)	328, 383
BspCNI	CTCAG	2 cut(s)	552, 918
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	3 cut(s)	328, 538, 648
BspMI	ACCTGC	1 cut(s)	910
BspPI	GGATC	2 cut(s)	263, 723
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	1 cut(s)	684
BsrDI	GCAATG	1 cut(s)	403
BsrI	ACTGG	3 cut(s)	296, 318, 730
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	5 cut(s)	142, 268, 274, 345, 715
BssNI	GRCGYC	1 cut(s)	59
Bst4CI	ACNGT	2 cut(s)	310, 956
Bst6I	CTCTTC	1 cut(s)	908
BstACI	GRCGYC	1 cut(s)	59
BstDEI	CTNAG	2 cut(s)	560, 926
BstDSI	CCRYGG	1 cut(s)	532
BstF5I	GGATG	5 cut(s)	255, 348, 416, 831, 942
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	2 cut(s)	467, 899
BstKTI	GATC	5 cut(s)	145, 271, 277, 348, 718
BstMAI	GTCTC	2 cut(s)	255, 597
BstMBI	GATC	5 cut(s)	142, 268, 274, 345, 715
BstMWI	GCNNNNNNNGC	7 cut(s)	72, 86, 128, 131, 134, 137, 763
BstNSI	RCATGY	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	355
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	6 cut(s)	134, 137, 140, 143, 146, 149
BstV2I	GAAGAC	1 cut(s)	696
BstX2I	RGATCY	2 cut(s)	268, 715
BstYI	RGATCY	2 cut(s)	268, 715
BsuRI	GGCC	2 cut(s)	328, 383
BtgI	CCRYGG	1 cut(s)	532
BtgZI	GCGATG	1 cut(s)	788
BtsCI	GGATG	5 cut(s)	255, 348, 416, 831, 942
BtsIMutI	CAGTG	2 cut(s)	325, 961
BveI	ACCTGC	1 cut(s)	910
CaiI	CAGNNNCTG	1 cut(s)	925
CfoI	GCGC	2 cut(s)	467, 899
Cfr13I	GGNCC	3 cut(s)	326, 327, 537
CseI	GACGC	1 cut(s)	552
Csp6I	GTAC	3 cut(s)	102, 311, 795
CviAII	CATG	2 cut(s)	424, 471
CviQI	GTAC	3 cut(s)	102, 311, 795
DdeI	CTNAG	2 cut(s)	560, 926
DpnI	GATC	5 cut(s)	144, 270, 276, 347, 717
DpnII	GATC	5 cut(s)	142, 268, 274, 345, 715
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	908
EarI	CTCTTC	1 cut(s)	908
Eco24I	GRGCYC	3 cut(s)	283, 330, 566
Eco31I	GGTCTC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	537
Eco57I	CTGAAG	1 cut(s)	1047
EcoT22I	ATGCAT	1 cut(s)	942
EcoT38I	GRGCYC	3 cut(s)	283, 330, 566
Esp3I	CGTCTC	1 cut(s)	597
FaeI	CATG	2 cut(s)	427, 474
FaiI	YATR	6 cut(s)	20, 389, 425, 472, 554, 942
FalI	AAGNNNNNCTT	2 cut(s)	991, 1023
FaqI	GGGAC	1 cut(s)	709
FatI	CATG	2 cut(s)	423, 470
FauI	CCCGC	2 cut(s)	127, 588
FblI	GTMKAC	1 cut(s)	335
FokI	GGATG	5 cut(s)	242, 335, 423, 838, 949
FriOI	GRGCYC	3 cut(s)	283, 330, 566
FspBI	CTAG	2 cut(s)	212, 284
FspI	TGCGCA	1 cut(s)	898
GlaI	GCGC	2 cut(s)	466, 898
HaeIII	GGCC	2 cut(s)	328, 383
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	552
HhaI	GCGC	2 cut(s)	467, 899
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	427, 474
Hin6I	GCGC	2 cut(s)	465, 897
HinP1I	GCGC	2 cut(s)	465, 897
HincII	GTYRAC	2 cut(s)	306, 336
HindII	GTYRAC	2 cut(s)	306, 336
HinfI	GANTC	4 cut(s)	110, 166, 701, 859
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	3 cut(s)	108, 446, 608
Hpy166II	GTNNAC	4 cut(s)	306, 336, 508, 804
Hpy188I	TCNGA	7 cut(s)	260, 459, 633, 651, 720, 864, 981
Hpy188III	TCNNGA	4 cut(s)	272, 370, 540, 679
Hpy8I	GTNNAC	4 cut(s)	306, 336, 508, 804
Hpy99I	CGWCG	2 cut(s)	523, 604
HpyAV	CCTTC	6 cut(s)	150, 434, 606, 811, 838, 1028
HpyCH4III	ACNGT	2 cut(s)	310, 956
HpyCH4IV	ACGT	3 cut(s)	59, 723, 1017
HpyCH4V	TGCA	3 cut(s)	247, 839, 940
HpyF10VI	GCNNNNNNNGC	7 cut(s)	72, 86, 128, 131, 134, 137, 763
HpyF3I	CTNAG	2 cut(s)	560, 926
HpySE526I	ACGT	3 cut(s)	59, 723, 1017
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	427, 474
HspAI	GCGC	2 cut(s)	465, 897
Kzo9I	GATC	5 cut(s)	142, 268, 274, 345, 715
LmnI	GCTCC	3 cut(s)	652, 681, 811
Lsp1109I	GCAGC	6 cut(s)	134, 137, 140, 143, 146, 149
LweI	GCATC	3 cut(s)	20, 401, 927
MaeI	CTAG	2 cut(s)	212, 284
MaeII	ACGT	3 cut(s)	59, 723, 1017
MalI	GATC	5 cut(s)	144, 270, 276, 347, 717
MbiI	CCGCTC	1 cut(s)	684
MboI	GATC	5 cut(s)	142, 268, 274, 345, 715
MboII	GAAGA	6 cut(s)	75, 696, 793, 925, 1040, 1043
MflI	RGATCY	2 cut(s)	268, 715
MhlI	GDGCHC	4 cut(s)	34, 283, 330, 566
MluCI	AATT	1 cut(s)	635
MlyI	GAGTC	1 cut(s)	710
MmeI	TCCRAC	1 cut(s)	595
Mph1103I	ATGCAT	1 cut(s)	942
MroXI	GAANNNNTTC	1 cut(s)	725
MseI	TTAA	2 cut(s)	6, 98
MspA1I	CMGCKG	1 cut(s)	1065
MspI	CCGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	7 cut(s)	72, 86, 128, 131, 134, 137, 763
NdeII	GATC	5 cut(s)	142, 268, 274, 345, 715
NlaIII	CATG	2 cut(s)	427, 474
NlaIV	GGNNCC	3 cut(s)	328, 538, 648
NsbI	TGCGCA	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	942
NspI	RCATGY	1 cut(s)	474
PaqCI	CACCTGC	1 cut(s)	910
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	725
PfeI	GAWTC	3 cut(s)	110, 166, 859
PflFI	GACNNNGTC	1 cut(s)	700
PleI	GAGTC	1 cut(s)	709
PpsI	GAGTC	1 cut(s)	709
Psp1406I	AACGTT	1 cut(s)	1017
PspN4I	GGNNCC	3 cut(s)	328, 538, 648
PspOMI	GGGCCC	1 cut(s)	326
PspPI	GGNCC	3 cut(s)	326, 327, 537
PstNI	CAGNNNCTG	1 cut(s)	925
PsuI	RGATCY	2 cut(s)	268, 715
PsyI	GACNNNGTC	1 cut(s)	700
PvuII	CAGCTG	1 cut(s)	1065
RsaI	GTAC	3 cut(s)	103, 312, 796
RsaNI	GTAC	3 cut(s)	102, 311, 795
SalI	GTCGAC	1 cut(s)	334
SaqAI	TTAA	2 cut(s)	6, 98
Sau3AI	GATC	5 cut(s)	142, 268, 274, 345, 715
Sau96I	GGNCC	3 cut(s)	326, 327, 537
SchI	GAGTC	1 cut(s)	710
SduI	GDGCHC	4 cut(s)	34, 283, 330, 566
SfaNI	GCATC	3 cut(s)	20, 401, 927
SfcI	CTRYAG	1 cut(s)	355
SinI	GGWCC	1 cut(s)	537
SmlI	CTYRAG	2 cut(s)	368, 547
SmoI	CTYRAG	2 cut(s)	368, 547
Sse9I	AATT	1 cut(s)	635
SspMI	CTAG	2 cut(s)	212, 284
TaaI	ACNGT	2 cut(s)	310, 956
TaiI	ACGT	3 cut(s)	62, 726, 1020
TaqI	TCGA	4 cut(s)	277, 335, 734, 779
TasI	AATT	1 cut(s)	635
TatI	WGTACW	1 cut(s)	310
TauI	GCSGC	5 cut(s)	383, 396, 417, 470, 766
TfiI	GAWTC	3 cut(s)	110, 166, 859
Tru1I	TTAA	2 cut(s)	6, 98
Tru9I	TTAA	2 cut(s)	6, 98
TscAI	CASTG	2 cut(s)	325, 961
TseI	GCWGC	6 cut(s)	122, 125, 128, 131, 134, 137
TspDTI	ATGAA	2 cut(s)	412, 680
TspGWI	ACGGA	2 cut(s)	291, 713
TspRI	CASTG	2 cut(s)	325, 961
Tth111I	GACNNNGTC	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	537
XapI	RAATTY	1 cut(s)	635
XceI	RCATGY	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	725
XspI	CTAG	2 cut(s)	212, 284
ZraI	GACGTC	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	942

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.