Rroxscaffold_7G00167070

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0008478
Physical Location & Seq
Reverse (-)
8357481 .. 8358500
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00167070.1

Sequence Viewer

Length: 1020 bp
ATGAGGACGTCAGGCTCTGCTTTGAGCTATGGTGGCACTCATTTAACCAAGGAATCATCGGGAGGTGGAGAAAAAAGAAGACTTGGAAATATTCACAATGGCACTCCTACTGCCCTCTCTGCTTTCACTGCTACTCACCAAACCCTAGACCATCATCACCCTCTTCAACCTCACCATGTTCAACCAGTGCCACTAACAACCAGAGATCTAGATCCAGATCGAGTCGGCTCCACTGCAGTTGCACCCAGTGGTGGTGTTTTGTCGGGTGGGCCCAAGTCCAAGACACCATCGTCGACATCCACAACCAGCAACGTCCGCTACCGAGAATGTCTCAAGAACCACGCAGCCAACATCGGCGGTAATGTGTTCGACGGGTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACCCTCGAAGCACTGAAATGCGCGGCTTGTGATTGCCACAGGAACTTCCACCGTAAGGAGGTGGACGGCGAGACGACGCCGTTCGGGCCCTGCTCCAGATCAAGAAGCATAATGCTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCGTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGCGTGGCTTTCGGTGGGGGAGGAGGGGGGACGGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGAGGGGTGATGCCGCCCTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTTCACGGCGGAGCAGAAGGTGAGGATGGTGGAGTTTGCGGAGCGAGTCGGGTGGAGAATTCAGAAGCAGGATGAGGAGGATGTCGAGAAGTTTTGTGATGAGGTGGGAGTGAAGAGGCAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGCCAAGAAGGAGGAGGGACAGACACATAA

Protein Analysis

339

Amino Acids

36.66

Weight (kDa)

6.83

Isoelectric Point (pI)

60.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 104 - 157 2.6e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 859
AasI GACNNNNNNGTC 1 cut(s) 289
AatII GACGTC 1 cut(s) 11
Acc36I ACCTGC 1 cut(s) 859
AccI GTMKAC 1 cut(s) 293
AccII CGCG 1 cut(s) 431
AclI AACGTT 1 cut(s) 672
AclWI GGATC 2 cut(s) 206, 672
AcsI RAATTY 2 cut(s) 593, 807
AcyI GRCGYC 2 cut(s) 8, 485
AdeI CACNNNGTG 1 cut(s) 248
AfiI CCNNNNNNNGG 3 cut(s) 251, 463, 466
AgsI TTSAA 4 cut(s) 167, 182, 608, 974
AjnI CCWGG 1 cut(s) 988
AluBI AGCT 5 cut(s) 27, 538, 723, 955, 977
AluI AGCT 5 cut(s) 27, 538, 723, 955, 977
Alw26I GTCTC 3 cut(s) 335, 473, 561
AlwI GGATC 2 cut(s) 206, 672
AlwNI CAGNNNCTG 2 cut(s) 17, 874
AoxI GGCC 3 cut(s) 269, 494, 991
ApaI GGGCCC 2 cut(s) 273, 498
ApeKI GCWGC 2 cut(s) 344, 919
ApoI RAATTY 2 cut(s) 593, 807
ArsI GACNNNNNNTTYG 2 cut(s) 637, 669
Asp700I GAANNNNTTC 2 cut(s) 674, 737
AspLEI GCGC 1 cut(s) 431
AspS9I GGNCC 5 cut(s) 269, 270, 494, 495, 744
AsuHPI GGTGA 6 cut(s) 128, 149, 164, 718, 781, 928
AvaII GGWCC 1 cut(s) 744
BaeGI GKGCMC 2 cut(s) 273, 498
BanII GRGCYC 3 cut(s) 273, 498, 530
BbsI GAAGAC 2 cut(s) 85, 645
BbvCI CCTCAGC 1 cut(s) 875
BbvI GCAGC 2 cut(s) 356, 931
BccI CCATC 4 cut(s) 159, 295, 683, 769
BceAI ACGGC 3 cut(s) 472, 490, 771
BciT130I CCWGG 1 cut(s) 990
BcoDI GTCTC 3 cut(s) 335, 473, 561
BfaI CTAG 2 cut(s) 146, 209
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 859
BglI GCCNNNNNGGC 1 cut(s) 493
BglII AGATCT 1 cut(s) 205
BisI GCNGC 6 cut(s) 345, 397, 432, 548, 713, 920
BlpI GCTNAGC 1 cut(s) 524
BlsI GCNGC 6 cut(s) 346, 398, 433, 549, 714, 921
Bme1390I CCNGG 1 cut(s) 990
Bme18I GGWCC 1 cut(s) 744
BmgT120I GGNCC 5 cut(s) 269, 270, 494, 495, 744
BmiI GGNNCC 4 cut(s) 229, 271, 409, 496
BmrFI CCNGG 1 cut(s) 990
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 3 cut(s) 699, 876, 906
BmuI ACTGGG 1 cut(s) 240
BpiI GAAGAC 2 cut(s) 85, 645
BplI GAGNNNNNCTC 2 cut(s) 315, 347
BpmI CTGGAG 2 cut(s) 487, 518
Bpu10I CCTNAGC 1 cut(s) 875
Bpu1102I GCTNAGC 1 cut(s) 524
BpuEI CTTGAG 1 cut(s) 317
BsaBI GATNNNNATC 2 cut(s) 210, 216
BsaHI GRCGYC 2 cut(s) 8, 485
BsaJI CCNNGG 2 cut(s) 48, 564
BsaXI ACNNNNNCTCC 2 cut(s) 690, 720
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 463, 466
Bse1I ACTGG 2 cut(s) 185, 246
Bse8I GATNNNNATC 2 cut(s) 210, 216
BseBI CCWGG 1 cut(s) 990
BseDI CCNNGG 2 cut(s) 48, 564
BseGI GGATG 6 cut(s) 296, 694, 780, 826, 835, 891
BseJI GATNNNNATC 2 cut(s) 210, 216
BseLI CCNNNNNNNGG 3 cut(s) 251, 463, 466
BseMII CTCAG 2 cut(s) 515, 866
BseNI ACTGG 2 cut(s) 185, 246
BseRI GAGGAG 4 cut(s) 651, 714, 839, 1017
BseSI GKGCMC 2 cut(s) 273, 498
BseXI GCAGC 2 cut(s) 356, 931
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 3 cut(s) 271, 496, 993
BslFI GGGAC 1 cut(s) 658
BslI CCNNNNNNNGG 3 cut(s) 251, 463, 466
BsmAI GTCTC 3 cut(s) 335, 473, 561
BsmBI CGTCTC 2 cut(s) 473, 561
BsmFI GGGAC 1 cut(s) 658
BsnI GGCC 3 cut(s) 271, 496, 993
Bsp120I GGGCCC 2 cut(s) 269, 494
Bsp1286I GDGCHC 3 cut(s) 273, 498, 530
Bsp143I GATC 5 cut(s) 205, 211, 217, 506, 664
Bsp1720I GCTNAGC 1 cut(s) 524
BspANI GGCC 3 cut(s) 271, 496, 993
BspCNI CTCAG 2 cut(s) 516, 867
BspFNI CGCG 1 cut(s) 431
BspHI TCATGA 1 cut(s) 979
BspLI GGNNCC 4 cut(s) 229, 271, 409, 496
BspMAI CTGCAG 1 cut(s) 238
BspMI ACCTGC 1 cut(s) 859
BspPI GGATC 2 cut(s) 206, 672
BsrI ACTGG 2 cut(s) 185, 246
BssECI CCNNGG 2 cut(s) 48, 564
BssMI GATC 5 cut(s) 205, 211, 217, 506, 664
BssNI GRCGYC 2 cut(s) 8, 485
BssT1I CCWWGG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 990
Bst4CI ACNGT 2 cut(s) 461, 907
Bst6I CTCTTC 2 cut(s) 168, 857
BstACI GRCGYC 2 cut(s) 8, 485
BstC8I GCNNGC 1 cut(s) 957
BstDEI CTNAG 2 cut(s) 524, 875
BstF5I GGATG 6 cut(s) 296, 694, 780, 826, 835, 891
BstFNI CGCG 1 cut(s) 431
BstHHI GCGC 1 cut(s) 431
BstKTI GATC 5 cut(s) 208, 214, 220, 509, 667
BstMAI GTCTC 3 cut(s) 335, 473, 561
BstMBI GATC 5 cut(s) 205, 211, 217, 506, 664
BstMWI GCNNNNNNNGC 6 cut(s) 33, 119, 128, 315, 493, 544
BstNI CCWGG 1 cut(s) 990
BstSCI CCNGG 1 cut(s) 988
BstSFI CTRYAG 1 cut(s) 234
BstSLI GKGCMC 2 cut(s) 273, 498
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 356, 931
BstV2I GAAGAC 2 cut(s) 85, 645
BstX2I RGATCY 3 cut(s) 205, 211, 664
BstXI CCANNNNNNTGG 1 cut(s) 619
BstYI RGATCY 3 cut(s) 205, 211, 664
BsuRI GGCC 3 cut(s) 271, 496, 993
BtsCI GGATG 6 cut(s) 296, 694, 780, 826, 835, 891
BtsI GCAGTG 2 cut(s) 126, 231
BtsIMutI CAGTG 6 cut(s) 126, 192, 231, 253, 419, 912
BveI ACCTGC 1 cut(s) 859
Cac8I GCNNGC 1 cut(s) 957
CaiI CAGNNNCTG 2 cut(s) 17, 874
CciI TCATGA 1 cut(s) 979
CfoI GCGC 1 cut(s) 431
Cfr13I GGNCC 5 cut(s) 269, 270, 494, 495, 744
CseI GACGC 1 cut(s) 493
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 6 cut(s) 176, 388, 613, 923, 929, 980
DdeI CTNAG 2 cut(s) 524, 875
DpnI GATC 5 cut(s) 207, 213, 219, 508, 666
DpnII GATC 5 cut(s) 205, 211, 217, 506, 664
DraIII CACNNNGTG 1 cut(s) 248
DrdI GACNNNNNNGTC 1 cut(s) 289
DseDI GACNNNNNNGTC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 168, 857
EarI CTCTTC 2 cut(s) 168, 857
EciI GGCGGA 2 cut(s) 534, 773
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 3 cut(s) 273, 498, 530
Eco47I GGWCC 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 495
EcoRI GAATTC 1 cut(s) 807
EcoRII CCWGG 1 cut(s) 988
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 3 cut(s) 273, 498, 530
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 2 cut(s) 473, 561
FaeI CATG 6 cut(s) 179, 391, 616, 926, 932, 983
FaqI GGGAC 1 cut(s) 658
FatI CATG 6 cut(s) 175, 387, 612, 922, 928, 979
FblI GTMKAC 1 cut(s) 293
Fnu4HI GCNGC 6 cut(s) 345, 397, 432, 548, 713, 920
FokI GGATG 6 cut(s) 283, 701, 787, 833, 842, 898
FriOI GRGCYC 3 cut(s) 273, 498, 530
Fsp4HI GCNGC 6 cut(s) 345, 397, 432, 548, 713, 920
FspBI CTAG 2 cut(s) 146, 209
GlaI GCGC 1 cut(s) 430
GluI GCNGC 6 cut(s) 345, 397, 432, 548, 713, 920
GsuI CTGGAG 2 cut(s) 487, 518
HaeIII GGCC 3 cut(s) 271, 496, 993
HgaI GACGC 1 cut(s) 493
HhaI GCGC 1 cut(s) 431
Hin1I GRCGYC 2 cut(s) 8, 485
Hin1II CATG 6 cut(s) 179, 391, 616, 926, 932, 983
Hin6I GCGC 1 cut(s) 429
HinP1I GCGC 1 cut(s) 429
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 4 cut(s) 53, 222, 650, 795
HphI GGTGA 6 cut(s) 128, 149, 164, 718, 781, 928
Hpy166II GTNNAC 3 cut(s) 294, 472, 753
Hpy188I TCNGA 2 cut(s) 669, 813
Hpy8I GTNNAC 3 cut(s) 294, 472, 753
Hpy99I CGWCG 3 cut(s) 295, 374, 487
HpyAV CCTTC 3 cut(s) 398, 760, 992
HpyCH4III ACNGT 2 cut(s) 461, 907
HpyCH4IV ACGT 3 cut(s) 8, 312, 672
HpyCH4V TGCA 4 cut(s) 236, 242, 889, 919
HpyF10VI GCNNNNNNNGC 6 cut(s) 33, 119, 128, 315, 493, 544
HpyF3I CTNAG 2 cut(s) 524, 875
HpySE526I ACGT 3 cut(s) 8, 312, 672
Hsp92I GRCGYC 2 cut(s) 8, 485
Hsp92II CATG 6 cut(s) 179, 391, 616, 926, 932, 983
HspAI GCGC 1 cut(s) 429
Kzo9I GATC 5 cut(s) 205, 211, 217, 506, 664
LmnI GCTCC 5 cut(s) 233, 506, 543, 760, 790
Lsp1109I GCAGC 2 cut(s) 356, 931
LweI GCATC 3 cut(s) 699, 876, 906
MaeI CTAG 2 cut(s) 146, 209
MaeII ACGT 3 cut(s) 8, 312, 672
MalI GATC 5 cut(s) 207, 213, 219, 508, 666
MboI GATC 5 cut(s) 205, 211, 217, 506, 664
MboII GAAGA 8 cut(s) 90, 155, 645, 742, 874, 922, 925, 995
MflI RGATCY 3 cut(s) 205, 211, 664
MhlI GDGCHC 3 cut(s) 273, 498, 530
MluCI AATT 2 cut(s) 593, 807
MlyI GAGTC 3 cut(s) 231, 659, 804
MroXI GAANNNNTTC 2 cut(s) 674, 737
MseI TTAA 1 cut(s) 44
MslI CAYNNNNRTG 3 cut(s) 424, 617, 927
MspA1I CMGCKG 1 cut(s) 955
MspR9I CCNGG 1 cut(s) 990
MvaI CCWGG 1 cut(s) 990
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 6 cut(s) 33, 119, 128, 315, 493, 544
NdeII GATC 5 cut(s) 205, 211, 217, 506, 664
NlaIII CATG 6 cut(s) 179, 391, 616, 926, 932, 983
NlaIV GGNNCC 4 cut(s) 229, 271, 409, 496
NmeAIII GCCGAG 1 cut(s) 545
PagI TCATGA 1 cut(s) 979
PaqCI CACCTGC 1 cut(s) 859
PcsI WCGNNNNNNNCGW 1 cut(s) 653
PdmI GAANNNNTTC 2 cut(s) 674, 737
PfeI GAWTC 1 cut(s) 53
PflFI GACNNNGTC 1 cut(s) 649
PkrI GCNGC 6 cut(s) 346, 398, 433, 549, 714, 921
PleI GAGTC 3 cut(s) 230, 658, 803
PpsI GAGTC 3 cut(s) 230, 658, 803
Psp1406I AACGTT 1 cut(s) 672
Psp6I CCWGG 1 cut(s) 988
PspGI CCWGG 1 cut(s) 988
PspN4I GGNNCC 4 cut(s) 229, 271, 409, 496
PspOMI GGGCCC 2 cut(s) 269, 494
PspPI GGNCC 5 cut(s) 269, 270, 494, 495, 744
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 2 cut(s) 17, 874
PsuI RGATCY 3 cut(s) 205, 211, 664
PsyI GACNNNGTC 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 955
RseI CAYNNNNRTG 3 cut(s) 424, 617, 927
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 44
SatI GCNGC 6 cut(s) 345, 397, 432, 548, 713, 920
Sau3AI GATC 5 cut(s) 205, 211, 217, 506, 664
Sau96I GGNCC 5 cut(s) 269, 270, 494, 495, 744
SchI GAGTC 3 cut(s) 231, 659, 804
ScrFI CCNGG 1 cut(s) 990
SduI GDGCHC 3 cut(s) 273, 498, 530
SfaNI GCATC 3 cut(s) 699, 876, 906
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 744
SmiMI CAYNNNNRTG 3 cut(s) 424, 617, 927
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 593, 807
SspI AATATT 1 cut(s) 91
SspMI CTAG 2 cut(s) 146, 209
StyD4I CCNGG 1 cut(s) 988
StyI CCWWGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 461, 907
TaiI ACGT 3 cut(s) 11, 315, 675
TaqI TCGA 9 cut(s) 220, 293, 369, 414, 599, 656, 678, 728, 834
TasI AATT 2 cut(s) 593, 807
TauI GCSGC 4 cut(s) 399, 434, 550, 715
TfiI GAWTC 1 cut(s) 53
Tru1I TTAA 1 cut(s) 44
Tru9I TTAA 1 cut(s) 44
TscAI CASTG 6 cut(s) 133, 192, 238, 253, 426, 912
TseI GCWGC 2 cut(s) 344, 919
TspDTI ATGAA 2 cut(s) 376, 996
TspGWI ACGGA 3 cut(s) 543, 549, 662
TspRI CASTG 6 cut(s) 133, 192, 238, 253, 426, 912
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 1 cut(s) 744
XapI RAATTY 2 cut(s) 593, 807
XbaI TCTAGA 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 952
XmiI GTMKAC 1 cut(s) 293
XmnI GAANNNNTTC 2 cut(s) 674, 737
XspI CTAG 2 cut(s) 146, 209
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.