Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002592.1

Orthogroup ID

OG0008478

Physical Location & Seq

Genomic Coordinates Reverse (-)

45768 .. 46787

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002592.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

atgaggacgtcaggttctgctttgagctatggtgccactcatttaaccaaggaatcatcgggaggtggagaaaaaagaagacttggaaatattcacaatggcactcctactgccctctctgctttcactgctacccaccaaaccctagaccaccatcaccctcttcaaccacaccatgttcaaccagtgccactaacaaccagagatctagatccagatcgagtcggctccactgcagttgcacccagtggtggtgttttgtcgggtgggcccaagtccaagacaccatcgtcgacatccacaaccagcaacgtccgctaccgagaatgtctcaaaaaccacgcagccaacatcggcggtaatgtgttcgacgggtgcggagagttcatgccttgcggcgaggaaggaaccctcgaagctctgaaatgcgctgcttgtgattgccacaggaacttccaccgtaaggaggtggacggcgagacgacgccgttcgggcccggctccagatcaagaagcataatgctgagccctctccagctccctccgccgcttccgtctccgtcctcggctctccaccaccaccgccaccagaaattctcgattgttcaacccatgagcgtggctttcggagggggaggaggggggacggagtcttcgagtgaggatctgaacgttttcgacaatggggatggagtaggaggaggggtggtgccgccctttagcttgtcgaagaagcggttcaggaccaagttcacgccggagcagaaggtgaggatggtggagtttgcggagcgagtcgggtggagaattcagaagcaggatgaggaggatgtggagaagttttgtgatgaggtgggagtgaagaggcaggtgctgagggtatggatgcacaataacaagaacacagtgaagaagatgcagcatgaccatgacatcaccaccaccacaagtcagctggcattggagaatgttgaagctcatgaagaaccaggtcaggaaggaggagggacggacacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

339

Amino Acids

36.62

Weight (kDa)

6.83

Isoelectric Point (pI)

60.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18350
fragaria_vesca	FvH4_2g39690
malus_domestica	MD08G1030700.v1.1 MD15G1025900.v1.1
prunus_persica	Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1
pyrus_communis	pycom08g02410 pycom15g02210
rosa_chinensis	RchiOBHm_Chr6g0301181
rosa_laevigata	RLG00000011270
rosa_multiflora	Rmu_co8134984.1_g000001 Rmu_co8298157.1_g000001 Rmu_sc0002592.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441370 Rroxscaffold_7G00167010 Rroxscaffold_7G00167070
rosa_rugosa	Rorug06G0302100
rosa_samantha	Rh6AG415500 Rh6BG422400 Rh6CG430000 Rh6DG415300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	859
AasI	GACNNNNNNGTC	1 cut(s)	289
AatII	GACGTC	1 cut(s)	11
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	2 cut(s)	32, 709
AccI	GTMKAC	1 cut(s)	293
AclI	AACGTT	1 cut(s)	672
AclWI	GGATC	2 cut(s)	206, 672
AcsI	RAATTY	2 cut(s)	593, 807
AcyI	GRCGYC	2 cut(s)	8, 485
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
AgsI	TTSAA	4 cut(s)	167, 182, 608, 974
AjnI	CCWGG	1 cut(s)	988
AloI	GAACNNNNNNTCC	1 cut(s)	30
AluBI	AGCT	6 cut(s)	27, 419, 538, 723, 955, 977
AluI	AGCT	6 cut(s)	27, 419, 538, 723, 955, 977
Alw26I	GTCTC	3 cut(s)	335, 473, 561
AlwI	GGATC	2 cut(s)	206, 672
AlwNI	CAGNNNCTG	2 cut(s)	17, 874
AoxI	GGCC	2 cut(s)	269, 494
ApaI	GGGCCC	2 cut(s)	273, 498
ApeKI	GCWGC	3 cut(s)	344, 431, 919
ApoI	RAATTY	2 cut(s)	593, 807
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
Asp700I	GAANNNNTTC	2 cut(s)	674, 737
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	5 cut(s)	269, 270, 494, 495, 744
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	3 cut(s)	149, 781, 928
AvaII	GGWCC	1 cut(s)	744
BaeGI	GKGCMC	2 cut(s)	273, 498
BanI	GGYRCC	2 cut(s)	32, 709
BanII	GRGCYC	3 cut(s)	273, 498, 530
BbsI	GAAGAC	2 cut(s)	85, 645
BbvCI	CCTCAGC	1 cut(s)	875
BbvI	GCAGC	3 cut(s)	356, 418, 931
BccI	CCATC	4 cut(s)	162, 295, 683, 769
BceAI	ACGGC	2 cut(s)	472, 490
BciT130I	CCWGG	1 cut(s)	990
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	3 cut(s)	335, 473, 561
BfaI	CTAG	2 cut(s)	146, 209
BfmI	CTRYAG	1 cut(s)	234
BfuAI	ACCTGC	1 cut(s)	859
BglI	GCCNNNNNGGC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	6 cut(s)	345, 397, 432, 548, 713, 920
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	6 cut(s)	346, 398, 433, 549, 714, 921
Bme1390I	CCNGG	2 cut(s)	498, 990
Bme18I	GGWCC	1 cut(s)	744
BmgT120I	GGNCC	5 cut(s)	269, 270, 494, 495, 744
BmiI	GGNNCC	7 cut(s)	34, 229, 271, 409, 496, 502, 711
BmrFI	CCNGG	2 cut(s)	498, 990
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	2 cut(s)	876, 906
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	85, 645
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpmI	CTGGAG	2 cut(s)	487, 518
Bpu10I	CCTNAGC	1 cut(s)	875
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	210, 216
BsaHI	GRCGYC	2 cut(s)	8, 485
BsaJI	CCNNGG	2 cut(s)	48, 564
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 693, 720, 723
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 463, 466
Bse1I	ACTGG	2 cut(s)	185, 246
Bse8I	GATNNNNATC	2 cut(s)	210, 216
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	2 cut(s)	48, 564
BseGI	GGATG	6 cut(s)	296, 694, 780, 826, 835, 891
BseJI	GATNNNNATC	2 cut(s)	210, 216
BseLI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
BseMII	CTCAG	2 cut(s)	515, 866
BseNI	ACTGG	2 cut(s)	185, 246
BseRI	GAGGAG	4 cut(s)	651, 714, 839, 1017
BseSI	GKGCMC	2 cut(s)	273, 498
BseXI	GCAGC	3 cut(s)	356, 418, 931
BshFI	GGCC	2 cut(s)	271, 496
BshNI	GGYRCC	2 cut(s)	32, 709
BsiSI	CCGG	2 cut(s)	498, 758
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
BsmAI	GTCTC	3 cut(s)	335, 473, 561
BsmBI	CGTCTC	2 cut(s)	473, 561
BsmFI	GGGAC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	271, 496
Bsp120I	GGGCCC	2 cut(s)	269, 494
Bsp1286I	GDGCHC	3 cut(s)	273, 498, 530
Bsp143I	GATC	5 cut(s)	205, 211, 217, 506, 664
Bsp1720I	GCTNAGC	1 cut(s)	524
BspANI	GGCC	2 cut(s)	271, 496
BspCNI	CTCAG	2 cut(s)	516, 867
BspHI	TCATGA	1 cut(s)	979
BspLI	GGNNCC	7 cut(s)	34, 229, 271, 409, 496, 502, 711
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	2 cut(s)	206, 672
BspT107I	GGYRCC	2 cut(s)	32, 709
BsrI	ACTGG	2 cut(s)	185, 246
BssECI	CCNNGG	2 cut(s)	48, 564
BssMI	GATC	5 cut(s)	205, 211, 217, 506, 664
BssNI	GRCGYC	2 cut(s)	8, 485
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	2 cut(s)	461, 907
Bst6I	CTCTTC	2 cut(s)	168, 857
BstACI	GRCGYC	2 cut(s)	8, 485
BstC8I	GCNNGC	1 cut(s)	957
BstDEI	CTNAG	2 cut(s)	524, 875
BstF5I	GGATG	6 cut(s)	296, 694, 780, 826, 835, 891
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	5 cut(s)	208, 214, 220, 509, 667
BstMAI	GTCTC	3 cut(s)	335, 473, 561
BstMBI	GATC	5 cut(s)	205, 211, 217, 506, 664
BstMWI	GCNNNNNNNGC	5 cut(s)	119, 128, 315, 493, 544
BstNI	CCWGG	1 cut(s)	990
BstSCI	CCNGG	2 cut(s)	496, 988
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	2 cut(s)	273, 498
BstV1I	GCAGC	3 cut(s)	356, 418, 931
BstV2I	GAAGAC	2 cut(s)	85, 645
BstX2I	RGATCY	3 cut(s)	205, 211, 664
BstXI	CCANNNNNNTGG	1 cut(s)	619
BstYI	RGATCY	3 cut(s)	205, 211, 664
BsuRI	GGCC	2 cut(s)	271, 496
BtsCI	GGATG	6 cut(s)	296, 694, 780, 826, 835, 891
BtsI	GCAGTG	2 cut(s)	126, 231
BtsIMutI	CAGTG	5 cut(s)	126, 192, 231, 253, 912
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	1 cut(s)	957
CaiI	CAGNNNCTG	2 cut(s)	17, 874
CciI	TCATGA	1 cut(s)	979
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	5 cut(s)	269, 270, 494, 495, 744
CseI	GACGC	1 cut(s)	493
CsiI	ACCWGGT	1 cut(s)	988
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	6 cut(s)	176, 388, 613, 923, 929, 980
DdeI	CTNAG	2 cut(s)	524, 875
DpnI	GATC	5 cut(s)	207, 213, 219, 508, 666
DpnII	GATC	5 cut(s)	205, 211, 217, 506, 664
DraIII	CACNNNGTG	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	168, 857
EarI	CTCTTC	2 cut(s)	168, 857
EciI	GGCGGA	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	48
Eco24I	GRGCYC	3 cut(s)	273, 498, 530
Eco47I	GGWCC	1 cut(s)	744
EcoRI	GAATTC	1 cut(s)	807
EcoRII	CCWGG	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	48
EcoT38I	GRGCYC	3 cut(s)	273, 498, 530
ErhI	CCWWGG	1 cut(s)	48
Esp3I	CGTCTC	2 cut(s)	473, 561
FaeI	CATG	6 cut(s)	179, 391, 616, 926, 932, 983
FaqI	GGGAC	1 cut(s)	658
FatI	CATG	6 cut(s)	175, 387, 612, 922, 928, 979
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	6 cut(s)	345, 397, 432, 548, 713, 920
FokI	GGATG	6 cut(s)	283, 701, 787, 833, 842, 898
FriOI	GRGCYC	3 cut(s)	273, 498, 530
Fsp4HI	GCNGC	6 cut(s)	345, 397, 432, 548, 713, 920
FspBI	CTAG	2 cut(s)	146, 209
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	6 cut(s)	345, 397, 432, 548, 713, 920
GsuI	CTGGAG	2 cut(s)	487, 518
HaeIII	GGCC	2 cut(s)	271, 496
HapII	CCGG	2 cut(s)	498, 758
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	2 cut(s)	8, 485
Hin1II	CATG	6 cut(s)	179, 391, 616, 926, 932, 983
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	4 cut(s)	53, 222, 650, 795
HpaII	CCGG	2 cut(s)	498, 758
HphI	GGTGA	3 cut(s)	149, 781, 928
Hpy166II	GTNNAC	3 cut(s)	294, 472, 753
Hpy188I	TCNGA	4 cut(s)	423, 629, 669, 813
Hpy188III	TCNNGA	9 cut(s)	60, 209, 215, 504, 510, 598, 742, 980, 995
Hpy8I	GTNNAC	3 cut(s)	294, 472, 753
Hpy99I	CGWCG	3 cut(s)	295, 374, 487
HpyAV	CCTTC	3 cut(s)	398, 760, 992
HpyCH4III	ACNGT	2 cut(s)	461, 907
HpyCH4IV	ACGT	3 cut(s)	8, 312, 672
HpyCH4V	TGCA	4 cut(s)	236, 242, 889, 919
HpyF10VI	GCNNNNNNNGC	5 cut(s)	119, 128, 315, 493, 544
HpyF3I	CTNAG	2 cut(s)	524, 875
HpySE526I	ACGT	3 cut(s)	8, 312, 672
Hsp92I	GRCGYC	2 cut(s)	8, 485
Hsp92II	CATG	6 cut(s)	179, 391, 616, 926, 932, 983
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	5 cut(s)	205, 211, 217, 506, 664
LmnI	GCTCC	5 cut(s)	233, 506, 543, 760, 790
Lsp1109I	GCAGC	3 cut(s)	356, 418, 931
LweI	GCATC	2 cut(s)	876, 906
MabI	ACCWGGT	1 cut(s)	988
MaeI	CTAG	2 cut(s)	146, 209
MaeII	ACGT	3 cut(s)	8, 312, 672
MalI	GATC	5 cut(s)	207, 213, 219, 508, 666
MboI	GATC	5 cut(s)	205, 211, 217, 506, 664
MboII	GAAGA	8 cut(s)	90, 155, 645, 742, 874, 922, 925, 995
MflI	RGATCY	3 cut(s)	205, 211, 664
MhlI	GDGCHC	3 cut(s)	273, 498, 530
MluCI	AATT	2 cut(s)	593, 807
MlyI	GAGTC	3 cut(s)	231, 659, 804
MroXI	GAANNNNTTC	2 cut(s)	674, 737
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	2 cut(s)	617, 927
MspA1I	CMGCKG	1 cut(s)	955
MspI	CCGG	2 cut(s)	498, 758
MspR9I	CCNGG	2 cut(s)	498, 990
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	5 cut(s)	119, 128, 315, 493, 544
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	5 cut(s)	205, 211, 217, 506, 664
NlaIII	CATG	6 cut(s)	179, 391, 616, 926, 932, 983
NlaIV	GGNNCC	7 cut(s)	34, 229, 271, 409, 496, 502, 711
NmeAIII	GCCGAG	1 cut(s)	545
PagI	TCATGA	1 cut(s)	979
PaqCI	CACCTGC	1 cut(s)	859
PcsI	WCGNNNNNNNCGW	1 cut(s)	653
PdmI	GAANNNNTTC	2 cut(s)	674, 737
PfeI	GAWTC	1 cut(s)	53
PflFI	GACNNNGTC	1 cut(s)	649
PkrI	GCNGC	6 cut(s)	346, 398, 433, 549, 714, 921
PleI	GAGTC	3 cut(s)	230, 658, 803
PpsI	GAGTC	3 cut(s)	230, 658, 803
Psp1406I	AACGTT	1 cut(s)	672
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	7 cut(s)	34, 229, 271, 409, 496, 502, 711
PspOMI	GGGCCC	2 cut(s)	269, 494
PspPI	GGNCC	5 cut(s)	269, 270, 494, 495, 744
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	2 cut(s)	17, 874
PsuI	RGATCY	3 cut(s)	205, 211, 664
PsyI	GACNNNGTC	1 cut(s)	649
PvuII	CAGCTG	1 cut(s)	955
RseI	CAYNNNNRTG	2 cut(s)	617, 927
SalI	GTCGAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	6 cut(s)	345, 397, 432, 548, 713, 920
Sau3AI	GATC	5 cut(s)	205, 211, 217, 506, 664
Sau96I	GGNCC	5 cut(s)	269, 270, 494, 495, 744
SchI	GAGTC	3 cut(s)	231, 659, 804
ScrFI	CCNGG	2 cut(s)	498, 990
SduI	GDGCHC	3 cut(s)	273, 498, 530
SexAI	ACCWGGT	1 cut(s)	988
SfaNI	GCATC	2 cut(s)	876, 906
SfcI	CTRYAG	1 cut(s)	234
SinI	GGWCC	1 cut(s)	744
SmiMI	CAYNNNNRTG	2 cut(s)	617, 927
Sse9I	AATT	2 cut(s)	593, 807
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	146, 209
StyD4I	CCNGG	2 cut(s)	496, 988
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	461, 907
TaiI	ACGT	3 cut(s)	11, 315, 675
TaqI	TCGA	8 cut(s)	220, 293, 369, 414, 599, 656, 678, 728
TasI	AATT	2 cut(s)	593, 807
TauI	GCSGC	3 cut(s)	399, 550, 715
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	5 cut(s)	133, 192, 238, 253, 912
TseI	GCWGC	3 cut(s)	344, 431, 919
TspDTI	ATGAA	2 cut(s)	376, 996
TspGWI	ACGGA	3 cut(s)	543, 549, 662
TspRI	CASTG	5 cut(s)	133, 192, 238, 253, 912
Tth111I	GACNNNGTC	1 cut(s)	649
VpaK11BI	GGWCC	1 cut(s)	744
XapI	RAATTY	2 cut(s)	593, 807
XbaI	TCTAGA	1 cut(s)	208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	952
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	674, 737
XspI	CTAG	2 cut(s)	146, 209
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.