Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008478

Physical Location & Seq

Genomic Coordinates Reverse (-)

8330132 .. 8330643

Gene Structure 512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCGTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGCGGCCAGTGGGGAGGAGGGGGGACGGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGAGGGGTGATGCCGCCCTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTCTACGGCGGAGCAGAAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGCCAAGAAGGAGGAGGAGCGACAATCAAGGGGCCGATGAGGAGAGTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

138

Amino Acids

15.04

Weight (kDa)

9.1

Isoelectric Point (pI)

73.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18350
fragaria_vesca	FvH4_2g39690
malus_domestica	MD08G1030700.v1.1 MD15G1025900.v1.1
prunus_persica	Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1
pyrus_communis	pycom08g02410 pycom15g02210
rosa_chinensis	RchiOBHm_Chr6g0301181
rosa_laevigata	RLG00000011270
rosa_multiflora	Rmu_co8134984.1_g000001 Rmu_co8298157.1_g000001 Rmu_sc0002592.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441370 Rroxscaffold_7G00167010 Rroxscaffold_7G00167070
rosa_rugosa	Rorug06G0302100
rosa_samantha	Rh6AG415500 Rh6BG422400 Rh6CG430000 Rh6DG415300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	227
AciI	CCGC	7 cut(s)	26, 29, 64, 99, 188, 211, 233
AclI	AACGTT	1 cut(s)	147
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	74
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	2 cut(s)	89, 347
AjnI	CCWGG	1 cut(s)	361
AluBI	AGCT	5 cut(s)	19, 198, 328, 350, 414
AluI	AGCT	5 cut(s)	19, 198, 328, 350, 414
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	3 cut(s)	100, 364, 395
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp700I	GAANNNNTTC	2 cut(s)	149, 212
AspS9I	GGNCC	2 cut(s)	219, 395
AsuHPI	GGTGA	2 cut(s)	193, 301
AvaII	GGWCC	1 cut(s)	219
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	120
BbvCI	CCTCAGC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	304
BccI	CCATC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	363
BcoDI	GTCTC	1 cut(s)	42
BisI	GCNGC	4 cut(s)	29, 100, 188, 293
BlsI	GCNGC	4 cut(s)	30, 101, 189, 294
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	2 cut(s)	219, 395
BmiI	GGNNCC	1 cut(s)	396
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	3 cut(s)	174, 249, 279
BpiI	GAAGAC	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	248
BsaJI	CCNNGG	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	363
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	2 cut(s)	169, 264
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	4 cut(s)	126, 189, 390, 393
BseXI	GCAGC	1 cut(s)	304
BshFI	GGCC	3 cut(s)	102, 366, 397
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	42
BsmBI	CGTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	133
BsnI	GGCC	3 cut(s)	102, 366, 397
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	1 cut(s)	139
BspACI	CCGC	7 cut(s)	26, 29, 64, 99, 188, 211, 233
BspANI	GGCC	3 cut(s)	102, 366, 397
BspCNI	CTCAG	1 cut(s)	240
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	1 cut(s)	147
BsrBI	CCGCTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	1 cut(s)	139
Bst2UI	CCWGG	1 cut(s)	363
Bst4CI	ACNGT	1 cut(s)	280
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	330
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	169, 264
BstKTI	GATC	1 cut(s)	142
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	1 cut(s)	139
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 244
BstNI	CCWGG	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	361
BstV1I	GCAGC	1 cut(s)	304
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	3 cut(s)	102, 366, 397
BtsCI	GGATG	2 cut(s)	169, 264
BtsIMutI	CAGTG	2 cut(s)	110, 285
Cac8I	GCNNGC	1 cut(s)	330
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	219, 395
CviAII	CATG	4 cut(s)	94, 296, 302, 353
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	1 cut(s)	141
DpnII	GATC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	100
EciI	GGCGGA	2 cut(s)	15, 248
Eco24I	GRGCYC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	11
Esp3I	CGTCTC	1 cut(s)	42
FaeI	CATG	4 cut(s)	97, 299, 305, 356
FaiI	YATR	5 cut(s)	95, 256, 297, 303, 354
FaqI	GGGAC	1 cut(s)	133
FatI	CATG	4 cut(s)	93, 295, 301, 352
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	4 cut(s)	29, 100, 188, 293
FokI	GGATG	2 cut(s)	176, 271
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	4 cut(s)	29, 100, 188, 293
GluI	GCNGC	4 cut(s)	29, 100, 188, 293
HaeIII	GGCC	3 cut(s)	102, 366, 397
Hin1II	CATG	4 cut(s)	97, 299, 305, 356
HinfI	GANTC	1 cut(s)	125
HphI	GGTGA	2 cut(s)	193, 301
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	3 cut(s)	79, 217, 353
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	2 cut(s)	235, 365
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	2 cut(s)	262, 292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 244
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	97, 299, 305, 356
Kzo9I	GATC	1 cut(s)	139
LmnI	GCTCC	3 cut(s)	24, 235, 380
LpnPI	CCDG	7 cut(s)	29, 83, 116, 202, 314, 348, 375
Lsp1109I	GCAGC	1 cut(s)	304
LweI	GCATC	3 cut(s)	174, 249, 279
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	141
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	1 cut(s)	139
MboII	GAAGA	5 cut(s)	120, 217, 295, 298, 368
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	134
MroXI	GAANNNNTTC	2 cut(s)	149, 212
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	328
MspR9I	CCNGG	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	363
MwoI	GCNNNNNNNGC	2 cut(s)	25, 244
NdeII	GATC	1 cut(s)	139
NlaIII	CATG	4 cut(s)	97, 299, 305, 356
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	1 cut(s)	26
PagI	TCATGA	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
PdmI	GAANNNNTTC	2 cut(s)	149, 212
PflFI	GACNNNGTC	2 cut(s)	124, 223
PkrI	GCNGC	4 cut(s)	30, 101, 189, 294
PleI	GAGTC	1 cut(s)	133
PpsI	GAGTC	1 cut(s)	133
Psp1406I	AACGTT	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	361
PspGI	CCWGG	1 cut(s)	361
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	2 cut(s)	219, 395
PsuI	RGATCY	1 cut(s)	139
PsyI	GACNNNGTC	2 cut(s)	124, 223
PvuII	CAGCTG	1 cut(s)	328
RseI	CAYNNNNRTG	1 cut(s)	300
SatI	GCNGC	4 cut(s)	29, 100, 188, 293
Sau3AI	GATC	1 cut(s)	139
Sau96I	GGNCC	2 cut(s)	219, 395
SchI	GAGTC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	11
SetI	ASST	7 cut(s)	21, 150, 200, 246, 330, 352, 416
SfaNI	GCATC	3 cut(s)	174, 249, 279
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	7 cut(s)	26, 29, 64, 99, 188, 211, 233
StyD4I	CCNGG	1 cut(s)	361
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	4 cut(s)	80, 131, 153, 203
TasI	AATT	1 cut(s)	74
TauI	GCSGC	3 cut(s)	31, 102, 190
TscAI	CASTG	2 cut(s)	110, 285
TseI	GCWGC	1 cut(s)	292
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	3 cut(s)	24, 30, 137
TspRI	CASTG	2 cut(s)	110, 285
Tth111I	GACNNNGTC	2 cut(s)	124, 223
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	74
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	149, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.