Rh6AG415500

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0008478
Physical Location & Seq
Forward (+)
61062495 .. 61064586
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG415500.1

Sequence Viewer

Length: 1038 bp
ATGAGAACGCAAGACAATGAAATGAGGACGTCAGGTTCTGCTTTGAGCTATGGTGCCACTCATTTAACCAAGGAATCATCGGGAGGTGGAGAAAAACGAAGACTTGGAAATATTCACAATGGCACTCCTACTGCCCTCTCTGCTTTCACTGCTACCCACCAAACCCTAGACCACCATCACCCTCTTCAACCACACCATGTTCAACCAGTGCCACTAACAACCAGAGATCTAGATCCAGATCGAGTCGGCTCCACTGCAGTTGCACCCAGTGGTGGTGTTTTGTCGGGTGGGCCCAAGTCCAAGACACCATCGTCGACATCCACAACCAGCAACGTCCGCTACCGAGAATGTCTCAAAAACCACGCAGCCAACATCGGCGGTAATGTGTTCGACGGGTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACCCTCGAAGCTCTGAAATGCGCGGCTTGTGATTGCCACAGGAACTTCCACCGTAAGGAGGTGGACGGCGAGACGACGCCGTTCGGGCCCGGCTCCAGATCAAGAAGCATAATGCTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCGTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGCGTGGCTTTCGGAGGGGGAGGAGGGGGGACGGAATCTTCCAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGGGTGGTGCCGCCCTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTTCACGCCGGAGCAGAAGGTGAGGATGGTGGAGTTTGCGGAGCGAGTCGGGTGGAGAATTCAGAAGCAGGATGAGGAGGATGTGGAGAAGTTTTGTGATGAGGTGGGAGTGAAGAGGCAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACAAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGTCAGGAAGGAGGAGGGACAGACACATAA

Protein Analysis

345

Amino Acids

37.44

Weight (kDa)

6.68

Isoelectric Point (pI)

59.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 111 - 164 2.6e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 877
AasI GACNNNNNNGTC 1 cut(s) 310
AatII GACGTC 1 cut(s) 32
Acc36I ACCTGC 1 cut(s) 877
AccB1I GGYRCC 2 cut(s) 53, 727
AccI GTMKAC 1 cut(s) 314
AccII CGCG 1 cut(s) 452
AclI AACGTT 1 cut(s) 693
AclWI GGATC 2 cut(s) 227, 693
AcsI RAATTY 2 cut(s) 614, 825
AcyI GRCGYC 2 cut(s) 29, 506
AdeI CACNNNGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 3 cut(s) 272, 484, 487
AgsI TTSAA 4 cut(s) 188, 203, 629, 992
AjnI CCWGG 1 cut(s) 1006
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 6 cut(s) 48, 440, 559, 741, 973, 995
AluI AGCT 6 cut(s) 48, 440, 559, 741, 973, 995
Alw26I GTCTC 3 cut(s) 356, 494, 582
AlwI GGATC 2 cut(s) 227, 693
AlwNI CAGNNNCTG 2 cut(s) 38, 892
AoxI GGCC 2 cut(s) 290, 515
ApaI GGGCCC 2 cut(s) 294, 519
ApeKI GCWGC 2 cut(s) 365, 937
ApoI RAATTY 2 cut(s) 614, 825
Asp700I GAANNNNTTC 2 cut(s) 695, 755
AspLEI GCGC 1 cut(s) 452
AspS9I GGNCC 5 cut(s) 290, 291, 515, 516, 762
AsuC2I CCSGG 1 cut(s) 519
AsuHPI GGTGA 3 cut(s) 170, 799, 946
AvaII GGWCC 1 cut(s) 762
BaeGI GKGCMC 2 cut(s) 294, 519
BanI GGYRCC 2 cut(s) 53, 727
BanII GRGCYC 3 cut(s) 294, 519, 551
BbsI GAAGAC 1 cut(s) 106
BbvCI CCTCAGC 1 cut(s) 893
BbvI GCAGC 2 cut(s) 377, 949
BccI CCATC 4 cut(s) 183, 316, 704, 787
BceAI ACGGC 2 cut(s) 493, 511
BciT130I CCWGG 1 cut(s) 1008
BcnI CCSGG 1 cut(s) 519
BcoDI GTCTC 3 cut(s) 356, 494, 582
BfaI CTAG 2 cut(s) 167, 230
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 877
BglI GCCNNNNNGGC 1 cut(s) 514
BglII AGATCT 1 cut(s) 226
BisI GCNGC 6 cut(s) 366, 418, 453, 569, 731, 938
BlpI GCTNAGC 1 cut(s) 545
BlsI GCNGC 6 cut(s) 367, 419, 454, 570, 732, 939
Bme1390I CCNGG 2 cut(s) 519, 1008
Bme18I GGWCC 1 cut(s) 762
BmgT120I GGNCC 5 cut(s) 290, 291, 515, 516, 762
BmiI GGNNCC 7 cut(s) 55, 250, 292, 430, 517, 523, 729
BmrFI CCNGG 2 cut(s) 519, 1008
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 894, 924
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 106
BplI GAGNNNNNCTC 2 cut(s) 336, 368
BpmI CTGGAG 2 cut(s) 508, 539
Bpu10I CCTNAGC 1 cut(s) 893
Bpu1102I GCTNAGC 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 519
BsaBI GATNNNNATC 2 cut(s) 231, 237
BsaHI GRCGYC 2 cut(s) 29, 506
BsaJI CCNNGG 2 cut(s) 69, 585
BsaXI ACNNNNNCTCC 2 cut(s) 711, 741
Bsc4I CCNNNNNNNGG 3 cut(s) 272, 484, 487
Bse1I ACTGG 3 cut(s) 206, 267, 678
Bse8I GATNNNNATC 2 cut(s) 231, 237
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 2 cut(s) 69, 585
BseGI GGATG 6 cut(s) 317, 715, 798, 844, 853, 909
BseJI GATNNNNATC 2 cut(s) 231, 237
BseLI CCNNNNNNNGG 3 cut(s) 272, 484, 487
BseMII CTCAG 2 cut(s) 536, 884
BseNI ACTGG 3 cut(s) 206, 267, 678
BseRI GAGGAG 3 cut(s) 672, 857, 1035
BseSI GKGCMC 2 cut(s) 294, 519
BseXI GCAGC 2 cut(s) 377, 949
Bsh1236I CGCG 1 cut(s) 452
BshFI GGCC 2 cut(s) 292, 517
BshNI GGYRCC 2 cut(s) 53, 727
BsiSI CCGG 2 cut(s) 519, 776
BslFI GGGAC 1 cut(s) 679
BslI CCNNNNNNNGG 3 cut(s) 272, 484, 487
BsmAI GTCTC 3 cut(s) 356, 494, 582
BsmBI CGTCTC 2 cut(s) 494, 582
BsmFI GGGAC 1 cut(s) 679
BsnI GGCC 2 cut(s) 292, 517
Bsp120I GGGCCC 2 cut(s) 290, 515
Bsp1286I GDGCHC 3 cut(s) 294, 519, 551
Bsp143I GATC 5 cut(s) 226, 232, 238, 527, 685
Bsp1720I GCTNAGC 1 cut(s) 545
BspANI GGCC 2 cut(s) 292, 517
BspCNI CTCAG 2 cut(s) 537, 885
BspFNI CGCG 1 cut(s) 452
BspHI TCATGA 1 cut(s) 997
BspLI GGNNCC 7 cut(s) 55, 250, 292, 430, 517, 523, 729
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 877
BspPI GGATC 2 cut(s) 227, 693
BspT107I GGYRCC 2 cut(s) 53, 727
BsrI ACTGG 3 cut(s) 206, 267, 678
BssECI CCNNGG 2 cut(s) 69, 585
BssMI GATC 5 cut(s) 226, 232, 238, 527, 685
BssNI GRCGYC 2 cut(s) 29, 506
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 482, 925
Bst6I CTCTTC 2 cut(s) 189, 875
BstACI GRCGYC 2 cut(s) 29, 506
BstC8I GCNNGC 1 cut(s) 975
BstDEI CTNAG 2 cut(s) 545, 893
BstF5I GGATG 6 cut(s) 317, 715, 798, 844, 853, 909
BstFNI CGCG 1 cut(s) 452
BstHHI GCGC 1 cut(s) 452
BstKTI GATC 5 cut(s) 229, 235, 241, 530, 688
BstMAI GTCTC 3 cut(s) 356, 494, 582
BstMBI GATC 5 cut(s) 226, 232, 238, 527, 685
BstMWI GCNNNNNNNGC 5 cut(s) 140, 149, 336, 514, 565
BstNI CCWGG 1 cut(s) 1008
BstSCI CCNGG 2 cut(s) 517, 1006
BstSFI CTRYAG 1 cut(s) 255
BstSLI GKGCMC 2 cut(s) 294, 519
BstUI CGCG 1 cut(s) 452
BstV1I GCAGC 2 cut(s) 377, 949
BstV2I GAAGAC 1 cut(s) 106
BstX2I RGATCY 3 cut(s) 226, 232, 685
BstXI CCANNNNNNTGG 1 cut(s) 640
BstYI RGATCY 3 cut(s) 226, 232, 685
BsuRI GGCC 2 cut(s) 292, 517
BtsCI GGATG 6 cut(s) 317, 715, 798, 844, 853, 909
BtsI GCAGTG 2 cut(s) 147, 252
BtsIMutI CAGTG 6 cut(s) 147, 213, 252, 274, 685, 930
BveI ACCTGC 1 cut(s) 877
Cac8I GCNNGC 1 cut(s) 975
CaiI CAGNNNCTG 2 cut(s) 38, 892
CciI TCATGA 1 cut(s) 997
CfoI GCGC 1 cut(s) 452
Cfr13I GGNCC 5 cut(s) 290, 291, 515, 516, 762
CseI GACGC 1 cut(s) 514
CsiI ACCWGGT 1 cut(s) 1006
CspCI CAANNNNNGTGG 2 cut(s) 241, 276
CviAII CATG 6 cut(s) 197, 409, 634, 941, 947, 998
DdeI CTNAG 2 cut(s) 545, 893
DpnI GATC 5 cut(s) 228, 234, 240, 529, 687
DpnII GATC 5 cut(s) 226, 232, 238, 527, 685
DraIII CACNNNGTG 1 cut(s) 269
DrdI GACNNNNNNGTC 1 cut(s) 310
DseDI GACNNNNNNGTC 1 cut(s) 310
Eam1104I CTCTTC 2 cut(s) 189, 875
EarI CTCTTC 2 cut(s) 189, 875
EciI GGCGGA 1 cut(s) 555
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 3 cut(s) 294, 519, 551
Eco47I GGWCC 1 cut(s) 762
EcoRI GAATTC 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 3 cut(s) 294, 519, 551
ErhI CCWWGG 1 cut(s) 69
Esp3I CGTCTC 2 cut(s) 494, 582
FaeI CATG 6 cut(s) 200, 412, 637, 944, 950, 1001
FaqI GGGAC 1 cut(s) 679
FatI CATG 6 cut(s) 196, 408, 633, 940, 946, 997
FblI GTMKAC 1 cut(s) 314
Fnu4HI GCNGC 6 cut(s) 366, 418, 453, 569, 731, 938
FokI GGATG 6 cut(s) 304, 722, 805, 851, 860, 916
FriOI GRGCYC 3 cut(s) 294, 519, 551
Fsp4HI GCNGC 6 cut(s) 366, 418, 453, 569, 731, 938
FspBI CTAG 2 cut(s) 167, 230
GlaI GCGC 1 cut(s) 451
GluI GCNGC 6 cut(s) 366, 418, 453, 569, 731, 938
GsuI CTGGAG 2 cut(s) 508, 539
HaeIII GGCC 2 cut(s) 292, 517
HapII CCGG 2 cut(s) 519, 776
HgaI GACGC 1 cut(s) 514
HhaI GCGC 1 cut(s) 452
Hin1I GRCGYC 2 cut(s) 29, 506
Hin1II CATG 6 cut(s) 200, 412, 637, 944, 950, 1001
Hin6I GCGC 1 cut(s) 450
HinP1I GCGC 1 cut(s) 450
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HinfI GANTC 4 cut(s) 74, 243, 671, 813
HpaII CCGG 2 cut(s) 519, 776
HphI GGTGA 3 cut(s) 170, 799, 946
Hpy166II GTNNAC 3 cut(s) 315, 493, 771
Hpy188I TCNGA 4 cut(s) 444, 650, 690, 831
Hpy188III TCNNGA 9 cut(s) 81, 230, 236, 525, 531, 619, 760, 998, 1013
Hpy8I GTNNAC 3 cut(s) 315, 493, 771
Hpy99I CGWCG 3 cut(s) 316, 395, 508
HpyAV CCTTC 3 cut(s) 419, 778, 1010
HpyCH4III ACNGT 2 cut(s) 482, 925
HpyCH4IV ACGT 3 cut(s) 29, 333, 693
HpyCH4V TGCA 4 cut(s) 257, 263, 907, 937
HpyF10VI GCNNNNNNNGC 5 cut(s) 140, 149, 336, 514, 565
HpyF3I CTNAG 2 cut(s) 545, 893
HpySE526I ACGT 3 cut(s) 29, 333, 693
Hsp92I GRCGYC 2 cut(s) 29, 506
Hsp92II CATG 6 cut(s) 200, 412, 637, 944, 950, 1001
HspAI GCGC 1 cut(s) 450
Kzo9I GATC 5 cut(s) 226, 232, 238, 527, 685
LmnI GCTCC 5 cut(s) 254, 527, 564, 778, 808
Lsp1109I GCAGC 2 cut(s) 377, 949
LweI GCATC 2 cut(s) 894, 924
MabI ACCWGGT 1 cut(s) 1006
MaeI CTAG 2 cut(s) 167, 230
MaeII ACGT 3 cut(s) 29, 333, 693
MalI GATC 5 cut(s) 228, 234, 240, 529, 687
MboI GATC 5 cut(s) 226, 232, 238, 527, 685
MboII GAAGA 8 cut(s) 111, 176, 666, 760, 892, 940, 943, 1013
MflI RGATCY 3 cut(s) 226, 232, 685
MhlI GDGCHC 3 cut(s) 294, 519, 551
MluCI AATT 2 cut(s) 614, 825
MlyI GAGTC 2 cut(s) 252, 822
MroXI GAANNNNTTC 2 cut(s) 695, 755
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 2 cut(s) 638, 945
MspA1I CMGCKG 1 cut(s) 973
MspI CCGG 2 cut(s) 519, 776
MspR9I CCNGG 2 cut(s) 519, 1008
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 452
MwoI GCNNNNNNNGC 5 cut(s) 140, 149, 336, 514, 565
NciI CCSGG 1 cut(s) 519
NdeII GATC 5 cut(s) 226, 232, 238, 527, 685
NlaIII CATG 6 cut(s) 200, 412, 637, 944, 950, 1001
NlaIV GGNNCC 7 cut(s) 55, 250, 292, 430, 517, 523, 729
NmeAIII GCCGAG 1 cut(s) 566
PagI TCATGA 1 cut(s) 997
PaqCI CACCTGC 1 cut(s) 877
PdmI GAANNNNTTC 2 cut(s) 695, 755
PfeI GAWTC 2 cut(s) 74, 671
PkrI GCNGC 6 cut(s) 367, 419, 454, 570, 732, 939
PleI GAGTC 2 cut(s) 251, 821
PpsI GAGTC 2 cut(s) 251, 821
Psp1406I AACGTT 1 cut(s) 693
Psp6I CCWGG 1 cut(s) 1006
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 7 cut(s) 55, 250, 292, 430, 517, 523, 729
PspOMI GGGCCC 2 cut(s) 290, 515
PspPI GGNCC 5 cut(s) 290, 291, 515, 516, 762
PstI CTGCAG 1 cut(s) 259
PstNI CAGNNNCTG 2 cut(s) 38, 892
PsuI RGATCY 3 cut(s) 226, 232, 685
PvuII CAGCTG 1 cut(s) 973
RseI CAYNNNNRTG 2 cut(s) 638, 945
SalI GTCGAC 1 cut(s) 313
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 6 cut(s) 366, 418, 453, 569, 731, 938
Sau3AI GATC 5 cut(s) 226, 232, 238, 527, 685
Sau96I GGNCC 5 cut(s) 290, 291, 515, 516, 762
SchI GAGTC 2 cut(s) 252, 822
ScrFI CCNGG 2 cut(s) 519, 1008
SduI GDGCHC 3 cut(s) 294, 519, 551
SexAI ACCWGGT 1 cut(s) 1006
SfaNI GCATC 2 cut(s) 894, 924
SfcI CTRYAG 1 cut(s) 255
SinI GGWCC 1 cut(s) 762
SmiMI CAYNNNNRTG 2 cut(s) 638, 945
Sse9I AATT 2 cut(s) 614, 825
SspI AATATT 1 cut(s) 112
SspMI CTAG 2 cut(s) 167, 230
StyD4I CCNGG 2 cut(s) 517, 1006
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 2 cut(s) 482, 925
TaiI ACGT 3 cut(s) 32, 336, 696
TaqI TCGA 7 cut(s) 241, 314, 390, 435, 620, 699, 746
TasI AATT 2 cut(s) 614, 825
TauI GCSGC 4 cut(s) 420, 455, 571, 733
TfiI GAWTC 2 cut(s) 74, 671
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 6 cut(s) 154, 213, 259, 274, 685, 930
TseI GCWGC 2 cut(s) 365, 937
TspDTI ATGAA 3 cut(s) 33, 397, 1014
TspGWI ACGGA 3 cut(s) 564, 570, 683
TspRI CASTG 6 cut(s) 154, 213, 259, 274, 685, 930
VpaK11BI GGWCC 1 cut(s) 762
XapI RAATTY 2 cut(s) 614, 825
XbaI TCTAGA 1 cut(s) 229
XcmI CCANNNNNNNNNTGG 1 cut(s) 970
XmiI GTMKAC 1 cut(s) 314
XmnI GAANNNNTTC 2 cut(s) 695, 755
XspI CTAG 2 cut(s) 167, 230
ZraI GACGTC 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.