Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8134984.1

Orthogroup ID

OG0008478

Physical Location & Seq

Genomic Coordinates Forward (+)

90 .. 634

Gene Structure 545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8134984.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 545 bp

atgaggacgtcaggttctgctttgagctatggtgccactcatttaacgaaggaatcatcgggaggtggagaaaaaagaagacttggaaatattcacaatggcactcctactgccctctctgctttcactgctacccaccaaaccctagaccaccatcaccctcttcaaccacaccatgttcaaccagtgccactaacaaccagagatctagatccagatcgagtcggctccactgcagttgcacccagtggtggtgttttgtcgggtgggcccaagtccaagacaccatcgtcgacatccacaaccagcaacgtccgctaccgagaatgtctcaaaaaccacgcagccaacatcggcggtaatgtgttcgacgggtgcggagagttcatgccttgcggcgaggaaggaaccctcgaagctctgaaatgcgctgcttgtgattgccacaggaacttccaccgtaaggaggtggacggcgagacgacgccgttcgggcccggctccagatcaagaagcataatgctgagccctctccagctccctcc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

182

Amino Acids

19.22

Weight (kDa)

8.27

Isoelectric Point (pI)

54.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18350
fragaria_vesca	FvH4_2g39690
malus_domestica	MD08G1030700.v1.1 MD15G1025900.v1.1
prunus_persica	Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1
pyrus_communis	pycom08g02410 pycom15g02210
rosa_chinensis	RchiOBHm_Chr6g0301181
rosa_laevigata	RLG00000011270
rosa_multiflora	Rmu_co8134984.1_g000001 Rmu_co8298157.1_g000001 Rmu_sc0002592.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441370 Rroxscaffold_7G00167010 Rroxscaffold_7G00167070
rosa_rugosa	Rorug06G0302100
rosa_samantha	Rh6AG415500 Rh6BG422400 Rh6CG430000 Rh6DG415300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AatII	GACGTC	1 cut(s)	11
AccB1I	GGYRCC	1 cut(s)	32
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	4 cut(s)	316, 357, 378, 396
AclWI	GGATC	1 cut(s)	206
AcyI	GRCGYC	2 cut(s)	8, 485
AdeI	CACNNNGTG	1 cut(s)	248
AfiI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
AgsI	TTSAA	2 cut(s)	167, 182
AloI	GAACNNNNNNTCC	1 cut(s)	30
AluBI	AGCT	3 cut(s)	27, 419, 538
AluI	AGCT	3 cut(s)	27, 419, 538
Alw26I	GTCTC	2 cut(s)	335, 473
AlwI	GGATC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	17
AoxI	GGCC	2 cut(s)	269, 494
ApaI	GGGCCC	2 cut(s)	273, 498
ApeKI	GCWGC	2 cut(s)	344, 431
AspLEI	GCGC	1 cut(s)	431
AspS9I	GGNCC	4 cut(s)	269, 270, 494, 495
AsuC2I	CCSGG	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	149
BaeGI	GKGCMC	2 cut(s)	273, 498
BanI	GGYRCC	1 cut(s)	32
BanII	GRGCYC	3 cut(s)	273, 498, 530
BbsI	GAAGAC	1 cut(s)	85
BbvI	GCAGC	2 cut(s)	356, 418
BccI	CCATC	2 cut(s)	162, 295
BceAI	ACGGC	2 cut(s)	472, 490
BcnI	CCSGG	1 cut(s)	498
BcoDI	GTCTC	2 cut(s)	335, 473
BfaI	CTAG	2 cut(s)	146, 209
BfmI	CTRYAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	493
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	3 cut(s)	345, 397, 432
BlpI	GCTNAGC	1 cut(s)	524
BlsI	GCNGC	3 cut(s)	346, 398, 433
Bme1390I	CCNGG	1 cut(s)	498
BmgT120I	GGNCC	4 cut(s)	269, 270, 494, 495
BmiI	GGNNCC	6 cut(s)	34, 229, 271, 409, 496, 502
BmrFI	CCNGG	1 cut(s)	498
BmrI	ACTGGG	1 cut(s)	240
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	85
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BpmI	CTGGAG	2 cut(s)	487, 518
Bpu1102I	GCTNAGC	1 cut(s)	524
BpuMI	CCSGG	1 cut(s)	498
BsaBI	GATNNNNATC	2 cut(s)	210, 216
BsaHI	GRCGYC	2 cut(s)	8, 485
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 463, 466
Bse1I	ACTGG	2 cut(s)	185, 246
Bse8I	GATNNNNATC	2 cut(s)	210, 216
BseGI	GGATG	1 cut(s)	296
BseJI	GATNNNNATC	2 cut(s)	210, 216
BseLI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
BseMII	CTCAG	1 cut(s)	515
BseNI	ACTGG	2 cut(s)	185, 246
BseSI	GKGCMC	2 cut(s)	273, 498
BseXI	GCAGC	2 cut(s)	356, 418
BshFI	GGCC	2 cut(s)	271, 496
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	498
BslI	CCNNNNNNNGG	3 cut(s)	251, 463, 466
BsmAI	GTCTC	2 cut(s)	335, 473
BsmBI	CGTCTC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	271, 496
Bsp120I	GGGCCC	2 cut(s)	269, 494
Bsp1286I	GDGCHC	3 cut(s)	273, 498, 530
Bsp143I	GATC	4 cut(s)	205, 211, 217, 506
Bsp1720I	GCTNAGC	1 cut(s)	524
BspACI	CCGC	4 cut(s)	316, 357, 378, 396
BspANI	GGCC	2 cut(s)	271, 496
BspCNI	CTCAG	1 cut(s)	516
BspLI	GGNNCC	6 cut(s)	34, 229, 271, 409, 496, 502
BspMAI	CTGCAG	1 cut(s)	238
BspPI	GGATC	1 cut(s)	206
BspT107I	GGYRCC	1 cut(s)	32
BsrI	ACTGG	2 cut(s)	185, 246
BssMI	GATC	4 cut(s)	205, 211, 217, 506
BssNI	GRCGYC	2 cut(s)	8, 485
Bst4CI	ACNGT	1 cut(s)	461
Bst6I	CTCTTC	1 cut(s)	168
BstACI	GRCGYC	2 cut(s)	8, 485
BstDEI	CTNAG	1 cut(s)	524
BstF5I	GGATG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	431
BstKTI	GATC	4 cut(s)	208, 214, 220, 509
BstMAI	GTCTC	2 cut(s)	335, 473
BstMBI	GATC	4 cut(s)	205, 211, 217, 506
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 315, 493
BstSCI	CCNGG	1 cut(s)	496
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	2 cut(s)	273, 498
BstV1I	GCAGC	2 cut(s)	356, 418
BstV2I	GAAGAC	1 cut(s)	85
BstX2I	RGATCY	2 cut(s)	205, 211
BstYI	RGATCY	2 cut(s)	205, 211
BsuRI	GGCC	2 cut(s)	271, 496
BtsCI	GGATG	1 cut(s)	296
BtsI	GCAGTG	2 cut(s)	126, 231
BtsIMutI	CAGTG	4 cut(s)	126, 192, 231, 253
CaiI	CAGNNNCTG	1 cut(s)	17
CfoI	GCGC	1 cut(s)	431
Cfr13I	GGNCC	4 cut(s)	269, 270, 494, 495
CseI	GACGC	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	220, 255
CviAII	CATG	2 cut(s)	176, 388
CviJI	RGCY	9 cut(s)	27, 228, 271, 347, 419, 496, 501, 528, 538
CviKI_1	RGCY	9 cut(s)	27, 228, 271, 347, 419, 496, 501, 528, 538
DdeI	CTNAG	1 cut(s)	524
DpnI	GATC	4 cut(s)	207, 213, 219, 508
DpnII	GATC	4 cut(s)	205, 211, 217, 506
DraIII	CACNNNGTG	1 cut(s)	248
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco24I	GRGCYC	3 cut(s)	273, 498, 530
EcoT38I	GRGCYC	3 cut(s)	273, 498, 530
Esp3I	CGTCTC	1 cut(s)	473
FaeI	CATG	2 cut(s)	179, 391
FaiI	YATR	4 cut(s)	30, 177, 389, 518
FatI	CATG	2 cut(s)	175, 387
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	345, 397, 432
FokI	GGATG	1 cut(s)	283
FriOI	GRGCYC	3 cut(s)	273, 498, 530
Fsp4HI	GCNGC	3 cut(s)	345, 397, 432
FspBI	CTAG	2 cut(s)	146, 209
GlaI	GCGC	1 cut(s)	430
GluI	GCNGC	3 cut(s)	345, 397, 432
GsuI	CTGGAG	2 cut(s)	487, 518
HaeIII	GGCC	2 cut(s)	271, 496
HapII	CCGG	1 cut(s)	498
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	431
Hin1I	GRCGYC	2 cut(s)	8, 485
Hin1II	CATG	2 cut(s)	179, 391
Hin6I	GCGC	1 cut(s)	429
HinP1I	GCGC	1 cut(s)	429
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	2 cut(s)	53, 222
HpaII	CCGG	1 cut(s)	498
HphI	GGTGA	1 cut(s)	149
Hpy166II	GTNNAC	2 cut(s)	294, 472
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	5 cut(s)	60, 209, 215, 504, 510
Hpy8I	GTNNAC	2 cut(s)	294, 472
Hpy99I	CGWCG	3 cut(s)	295, 374, 487
HpyAV	CCTTC	2 cut(s)	43, 398
HpyCH4III	ACNGT	1 cut(s)	461
HpyCH4IV	ACGT	2 cut(s)	8, 312
HpyCH4V	TGCA	2 cut(s)	236, 242
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 315, 493
HpyF3I	CTNAG	1 cut(s)	524
HpySE526I	ACGT	2 cut(s)	8, 312
Hsp92I	GRCGYC	2 cut(s)	8, 485
Hsp92II	CATG	2 cut(s)	179, 391
HspAI	GCGC	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	205, 211, 217, 506
LmnI	GCTCC	3 cut(s)	233, 506, 543
LpnPI	CCDG	8 cut(s)	198, 214, 228, 259, 319, 433, 511, 517
Lsp1109I	GCAGC	2 cut(s)	356, 418
MaeI	CTAG	2 cut(s)	146, 209
MaeII	ACGT	2 cut(s)	8, 312
MalI	GATC	4 cut(s)	207, 213, 219, 508
MboI	GATC	4 cut(s)	205, 211, 217, 506
MboII	GAAGA	2 cut(s)	90, 155
MflI	RGATCY	2 cut(s)	205, 211
MhlI	GDGCHC	3 cut(s)	273, 498, 530
MlyI	GAGTC	1 cut(s)	231
MnlI	CCTC	7 cut(s)	56, 125, 171, 394, 422, 460, 540
MseI	TTAA	1 cut(s)	44
MspI	CCGG	1 cut(s)	498
MspR9I	CCNGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 315, 493
NciI	CCSGG	1 cut(s)	498
NdeII	GATC	4 cut(s)	205, 211, 217, 506
NlaIII	CATG	2 cut(s)	179, 391
NlaIV	GGNNCC	6 cut(s)	34, 229, 271, 409, 496, 502
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	346, 398, 433
PleI	GAGTC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	230
PspN4I	GGNNCC	6 cut(s)	34, 229, 271, 409, 496, 502
PspOMI	GGGCCC	2 cut(s)	269, 494
PspPI	GGNCC	4 cut(s)	269, 270, 494, 495
PstI	CTGCAG	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	2 cut(s)	205, 211
SalI	GTCGAC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	3 cut(s)	345, 397, 432
Sau3AI	GATC	4 cut(s)	205, 211, 217, 506
Sau96I	GGNCC	4 cut(s)	269, 270, 494, 495
SchI	GAGTC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	3 cut(s)	273, 498, 530
SetI	ASST	8 cut(s)	11, 16, 29, 67, 315, 421, 471, 540
SfcI	CTRYAG	1 cut(s)	234
SsiI	CCGC	4 cut(s)	316, 357, 378, 396
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	2 cut(s)	146, 209
StyD4I	CCNGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	461
TaiI	ACGT	2 cut(s)	11, 315
TaqI	TCGA	4 cut(s)	220, 293, 369, 414
TauI	GCSGC	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TscAI	CASTG	4 cut(s)	133, 192, 238, 253
TseI	GCWGC	2 cut(s)	344, 431
TspDTI	ATGAA	1 cut(s)	376
TspRI	CASTG	4 cut(s)	133, 192, 238, 253
XbaI	TCTAGA	1 cut(s)	208
XmiI	GTMKAC	1 cut(s)	293
XspI	CTAG	2 cut(s)	146, 209
ZraI	GACGTC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.