Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8298157.1

Orthogroup ID

OG0008478

Physical Location & Seq

Genomic Coordinates Reverse (-)

505 .. 858

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8298157.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ctgaacgttttcgacaatggggatggagtaggaggaggggtggtgccgccctttagcttgtcgaagaagcggttcaggaccaagttcacgccggagcagaaggtgaggatggtggagtttgcggagcgagtcgggtggagaattcagaagcaggatgaggaggatgtggagaagttttgtgatgaggtgggagtgaagaggcaggtgctgagggtatggatgcacaataacaagaacacagtgaagaagatgcagcatgaccatgacatcaccaccaccacaagtcagctggcattggagaatgttgaagctcatgaagaaccaggtcaggaaggaggagggacggacacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ZF-HD_dimer

Protein Analysis

117

Amino Acids

13.33

Weight (kDa)

5.81

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18350
fragaria_vesca	FvH4_2g39690
malus_domestica	MD08G1030700.v1.1 MD15G1025900.v1.1
prunus_persica	Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1 Prupe.1G378200_v2.0.a1
pyrus_communis	pycom08g02410 pycom15g02210
rosa_chinensis	RchiOBHm_Chr6g0301181
rosa_laevigata	RLG00000011270
rosa_multiflora	Rmu_co8134984.1_g000001 Rmu_co8298157.1_g000001 Rmu_sc0002592.1_g000013
rosa_roxburghii	Rroxscaffold_171G00441370 Rroxscaffold_7G00167010 Rroxscaffold_7G00167070
rosa_rugosa	Rorug06G0302100
rosa_samantha	Rh6AG415500 Rh6BG422400 Rh6CG430000 Rh6DG415300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	193
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	3 cut(s)	47, 70, 122
AclI	AACGTT	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	322
AluBI	AGCT	3 cut(s)	57, 289, 311
AluI	AGCT	3 cut(s)	57, 289, 311
AlwNI	CAGNNNCTG	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	8, 71
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	115, 262
AvaII	GGWCC	1 cut(s)	78
BanI	GGYRCC	1 cut(s)	43
BbvCI	CCTCAGC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	2 cut(s)	17, 103
BciT130I	CCWGG	1 cut(s)	324
BfuAI	ACCTGC	1 cut(s)	193
BisI	GCNGC	2 cut(s)	47, 254
BlsI	GCNGC	2 cut(s)	48, 255
Bme1390I	CCNGG	1 cut(s)	324
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	45
BmrFI	CCNGG	1 cut(s)	324
BmsI	GCATC	2 cut(s)	210, 240
Bpu10I	CCTNAGC	1 cut(s)	209
BsaXI	ACNNNNNCTCC	4 cut(s)	24, 27, 54, 57
BseBI	CCWGG	1 cut(s)	324
BseGI	GGATG	5 cut(s)	28, 114, 160, 169, 225
BseMII	CTCAG	1 cut(s)	200
BseRI	GAGGAG	3 cut(s)	48, 173, 351
BseXI	GCAGC	1 cut(s)	265
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	1 cut(s)	92
BspACI	CCGC	3 cut(s)	47, 70, 122
BspCNI	CTCAG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	5 cut(s)	28, 114, 160, 169, 225
BstNI	CCWGG	1 cut(s)	324
BstSCI	CCNGG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	265
BtsCI	GGATG	5 cut(s)	28, 114, 160, 169, 225
BtsIMutI	CAGTG	1 cut(s)	246
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	291
CaiI	CAGNNNCTG	1 cut(s)	208
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	322
CviAII	CATG	3 cut(s)	257, 263, 314
CviJI	RGCY	3 cut(s)	57, 289, 311
CviKI_1	RGCY	3 cut(s)	57, 289, 311
DdeI	CTNAG	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco47I	GGWCC	1 cut(s)	78
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	322
FaeI	CATG	3 cut(s)	260, 266, 317
FaiI	YATR	5 cut(s)	217, 258, 264, 315, 352
FatI	CATG	3 cut(s)	256, 262, 313
Fnu4HI	GCNGC	2 cut(s)	47, 254
FokI	GGATG	5 cut(s)	35, 121, 167, 176, 232
Fsp4HI	GCNGC	2 cut(s)	47, 254
GluI	GCNGC	2 cut(s)	47, 254
HapII	CCGG	1 cut(s)	92
Hin1II	CATG	3 cut(s)	260, 266, 317
HinfI	GANTC	1 cut(s)	129
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	115, 262
Hpy166II	GTNNAC	1 cut(s)	87
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	76, 314, 329
Hpy8I	GTNNAC	1 cut(s)	87
HpyAV	CCTTC	2 cut(s)	94, 326
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	223, 253
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	3 cut(s)	260, 266, 317
LmnI	GCTCC	2 cut(s)	94, 124
LpnPI	CCDG	8 cut(s)	61, 105, 137, 188, 275, 309, 314, 336
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	2 cut(s)	210, 240
MabI	ACCWGGT	1 cut(s)	322
MaeII	ACGT	1 cut(s)	6
MboII	GAAGA	5 cut(s)	76, 208, 256, 259, 329
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	138
MroXI	GAANNNNTTC	2 cut(s)	8, 71
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	324
NlaIII	CATG	3 cut(s)	260, 266, 317
NlaIV	GGNNCC	1 cut(s)	45
PagI	TCATGA	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	193
PdmI	GAANNNNTTC	2 cut(s)	8, 71
PkrI	GCNGC	2 cut(s)	48, 255
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp1406I	AACGTT	1 cut(s)	6
Psp6I	CCWGG	1 cut(s)	322
PspGI	CCWGG	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	45
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	261
SatI	GCNGC	2 cut(s)	47, 254
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	324
SetI	ASST	8 cut(s)	9, 59, 105, 189, 207, 291, 313, 328
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	210, 240
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	3 cut(s)	47, 70, 122
StyD4I	CCNGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	2 cut(s)	12, 62
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	49
TscAI	CASTG	1 cut(s)	246
TseI	GCWGC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	330
TspRI	CASTG	1 cut(s)	246
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XmnI	GAANNNNTTC	2 cut(s)	8, 71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.