RchiOBHm_Chr6g0301181

Zinc-finger homeodomain protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008478
Physical Location & Seq
Forward (+)
61697534 .. 61699875
2342 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27049

Sequence Viewer

Length: 981 bp
ATGGATTTTAGAACGCAAGACAATGAAATGAGGACGTGGAGAAAAAGAAGACTTGGAAATATTCACAATGGCACTCCTACTGCCATCTCTGCTTTCACTGCTACCCACCAAACCCTAGACCACCATCACCCTCTTCAACCACACCATGTTCAACCAGTGCCACTAACAACCAGAGATCTAGATCCAGATCGAGTCGGCTCCACTGCAGTTGCACCCAGTGGTGGTGTTTTGTCGGGTGGGCCCAAGTCCAAGACACCATCGTCGACATCCACAACCAGCAACGTCCGCTACCGAGAATGTCTCAAGAACCACGCAGCCAACATCGGCGGTAATGTGTTCGACGGGTGCGGAGAGTTCATGCCTTGCGGCGAGGAAGGAACCCTCGAAGCTCTGAAATGCGCGGCTTGTGATTGCCACAGGAACTTCCACCGTAAGGAGGTGGACGGCGAGACGACGCCGTTCGGGCCCGGCTCCAGATCAAGAAGCATAATGCTGAGCCCTCTCCAGCTCCCTCCGCCGCTTCCCTCTCCGTCCTCGGCTCTCCACCACCACCGCCACCAGAAATTCTCGATTGTTCAACCCATGAGCGTGGCTTTCGGAGGGGGGACGGAGTCTTCGAGTGAGGATCTGAACGTTTTCGACAATGGGGATGGAGTAGGAGGAGGGGTGGTGCCGCCTTTTAGCTTGTCGAAGAAGCGGTTCAGGACCAAGTTCACGGCGGAGCAGAAGGTGAGGATGGTGGAGTTTGCGGAGCGAGTCGGGTGGAGAATTCAGAAGCAGGATGAGGAGGATGTGGAGAAGTTTTGTGATGAGGTGGGAGTGAAGAGGCAGGTGCTGAGGGTATGGATGCACAATAACAAGAACACAGTGAAGAAGATGCAGCATGACCATGACATCACCACCACCACGAGTCAGCTGGCATTGGAGAATGTTGAAGCTCATGAAGAACCAGGTCAAGAAGGAGGAGGGACAGACACATAA

Protein Analysis

326

Amino Acids

35.93

Weight (kDa)

6.81

Isoelectric Point (pI)

59.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZF-HD_dimer PF04770 94 - 147 2.4e-29 ZF-HD protein dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 820
AasI GACNNNNNNGTC 1 cut(s) 259
Acc36I ACCTGC 1 cut(s) 820
AccB1I GGYRCC 1 cut(s) 670
AccI GTMKAC 1 cut(s) 263
AccII CGCG 1 cut(s) 401
AclI AACGTT 1 cut(s) 633
AclWI GGATC 2 cut(s) 176, 633
AcsI RAATTY 2 cut(s) 563, 768
AcyI GRCGYC 1 cut(s) 455
AdeI CACNNNGTG 1 cut(s) 218
AfiI CCNNNNNNNGG 3 cut(s) 221, 433, 436
AgsI TTSAA 4 cut(s) 137, 152, 578, 935
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 1 cut(s) 949
AluBI AGCT 5 cut(s) 389, 508, 684, 916, 938
AluI AGCT 5 cut(s) 389, 508, 684, 916, 938
Alw26I GTCTC 2 cut(s) 305, 443
AlwI GGATC 2 cut(s) 176, 633
AlwNI CAGNNNCTG 1 cut(s) 835
AoxI GGCC 2 cut(s) 239, 464
ApaI GGGCCC 2 cut(s) 243, 468
ApeKI GCWGC 2 cut(s) 314, 880
ApoI RAATTY 2 cut(s) 563, 768
ArsI GACNNNNNNTTYG 2 cut(s) 598, 630
Asp700I GAANNNNTTC 2 cut(s) 635, 698
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 5 cut(s) 239, 240, 464, 465, 705
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 3 cut(s) 119, 742, 889
AvaII GGWCC 1 cut(s) 705
BaeGI GKGCMC 2 cut(s) 243, 468
BanI GGYRCC 1 cut(s) 670
BanII GRGCYC 3 cut(s) 243, 468, 500
BauI CACGAG 1 cut(s) 907
BbsI GAAGAC 2 cut(s) 55, 606
BbvCI CCTCAGC 1 cut(s) 836
BbvI GCAGC 2 cut(s) 326, 892
BccI CCATC 5 cut(s) 92, 132, 265, 644, 730
BceAI ACGGC 3 cut(s) 442, 460, 732
BciT130I CCWGG 1 cut(s) 951
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 305, 443
BfaI CTAG 2 cut(s) 116, 179
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 820
BglI GCCNNNNNGGC 1 cut(s) 463
BglII AGATCT 1 cut(s) 175
BisI GCNGC 6 cut(s) 315, 367, 402, 518, 674, 881
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 6 cut(s) 316, 368, 403, 519, 675, 882
Bme1390I CCNGG 2 cut(s) 468, 951
Bme18I GGWCC 1 cut(s) 705
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 5 cut(s) 239, 240, 464, 465, 705
BmiI GGNNCC 6 cut(s) 199, 241, 379, 466, 472, 672
BmrFI CCNGG 2 cut(s) 468, 951
BmrI ACTGGG 1 cut(s) 210
BmsI GCATC 2 cut(s) 837, 867
BmuI ACTGGG 1 cut(s) 210
BpiI GAAGAC 2 cut(s) 55, 606
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpmI CTGGAG 2 cut(s) 457, 488
Bpu10I CCTNAGC 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 494
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 2 cut(s) 180, 186
BsaHI GRCGYC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 534
BsaXI ACNNNNNCTCC 4 cut(s) 651, 654, 681, 684
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 433, 436
Bse1I ACTGG 2 cut(s) 155, 216
Bse8I GATNNNNATC 2 cut(s) 180, 186
BseBI CCWGG 1 cut(s) 951
BseDI CCNNGG 1 cut(s) 534
BseGI GGATG 6 cut(s) 266, 655, 741, 787, 796, 852
BseJI GATNNNNATC 2 cut(s) 180, 186
BseLI CCNNNNNNNGG 3 cut(s) 221, 433, 436
BseMII CTCAG 2 cut(s) 485, 827
BseNI ACTGG 2 cut(s) 155, 216
BseRI GAGGAG 3 cut(s) 675, 800, 978
BseSI GKGCMC 2 cut(s) 243, 468
BseXI GCAGC 2 cut(s) 326, 892
Bsh1236I CGCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 241, 466
BshNI GGYRCC 1 cut(s) 670
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 3 cut(s) 221, 433, 436
BsmAI GTCTC 2 cut(s) 305, 443
BsmBI CGTCTC 1 cut(s) 443
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 2 cut(s) 241, 466
Bsp120I GGGCCC 2 cut(s) 239, 464
Bsp1286I GDGCHC 3 cut(s) 243, 468, 500
Bsp143I GATC 5 cut(s) 175, 181, 187, 476, 625
Bsp1720I GCTNAGC 1 cut(s) 494
BspANI GGCC 2 cut(s) 241, 466
BspCNI CTCAG 2 cut(s) 486, 828
BspFNI CGCG 1 cut(s) 401
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 6 cut(s) 199, 241, 379, 466, 472, 672
BspMAI CTGCAG 1 cut(s) 208
BspMI ACCTGC 1 cut(s) 820
BspPI GGATC 2 cut(s) 176, 633
BspT107I GGYRCC 1 cut(s) 670
BsrI ACTGG 2 cut(s) 155, 216
BssECI CCNNGG 1 cut(s) 534
BssMI GATC 5 cut(s) 175, 181, 187, 476, 625
BssNI GRCGYC 1 cut(s) 455
BssSI CACGAG 1 cut(s) 907
Bst2BI CACGAG 1 cut(s) 907
Bst2UI CCWGG 1 cut(s) 951
Bst4CI ACNGT 2 cut(s) 431, 868
Bst6I CTCTTC 2 cut(s) 138, 818
BstACI GRCGYC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 918
BstDEI CTNAG 2 cut(s) 494, 836
BstF5I GGATG 6 cut(s) 266, 655, 741, 787, 796, 852
BstFNI CGCG 1 cut(s) 401
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 5 cut(s) 178, 184, 190, 479, 628
BstMAI GTCTC 2 cut(s) 305, 443
BstMBI GATC 5 cut(s) 175, 181, 187, 476, 625
BstMWI GCNNNNNNNGC 5 cut(s) 89, 98, 285, 463, 514
BstNI CCWGG 1 cut(s) 951
BstSCI CCNGG 2 cut(s) 466, 949
BstSFI CTRYAG 1 cut(s) 204
BstSLI GKGCMC 2 cut(s) 243, 468
BstUI CGCG 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 326, 892
BstV2I GAAGAC 2 cut(s) 55, 606
BstX2I RGATCY 3 cut(s) 175, 181, 625
BstXI CCANNNNNNTGG 1 cut(s) 589
BstYI RGATCY 3 cut(s) 175, 181, 625
BsuRI GGCC 2 cut(s) 241, 466
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 6 cut(s) 266, 655, 741, 787, 796, 852
BtsI GCAGTG 2 cut(s) 96, 201
BtsIMutI CAGTG 5 cut(s) 96, 162, 201, 223, 873
BveI ACCTGC 1 cut(s) 820
Cac8I GCNNGC 1 cut(s) 918
CaiI CAGNNNCTG 1 cut(s) 835
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 5 cut(s) 239, 240, 464, 465, 705
CseI GACGC 1 cut(s) 463
CsiI ACCWGGT 1 cut(s) 949
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 6 cut(s) 146, 358, 583, 884, 890, 941
DdeI CTNAG 2 cut(s) 494, 836
DpnI GATC 5 cut(s) 177, 183, 189, 478, 627
DpnII GATC 5 cut(s) 175, 181, 187, 476, 625
DraIII CACNNNGTG 1 cut(s) 218
DrdI GACNNNNNNGTC 1 cut(s) 259
DseDI GACNNNNNNGTC 1 cut(s) 259
Eam1104I CTCTTC 2 cut(s) 138, 818
EarI CTCTTC 2 cut(s) 138, 818
EciI GGCGGA 2 cut(s) 504, 734
Eco24I GRGCYC 3 cut(s) 243, 468, 500
Eco47I GGWCC 1 cut(s) 705
EcoRI GAATTC 1 cut(s) 768
EcoRII CCWGG 1 cut(s) 949
EcoT38I GRGCYC 3 cut(s) 243, 468, 500
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 6 cut(s) 149, 361, 586, 887, 893, 944
FaiI YATR 9 cut(s) 147, 359, 488, 584, 844, 885, 891, 942, 979
FaqI GGGAC 1 cut(s) 619
FatI CATG 6 cut(s) 145, 357, 582, 883, 889, 940
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 6 cut(s) 315, 367, 402, 518, 674, 881
FokI GGATG 6 cut(s) 253, 662, 748, 794, 803, 859
FriOI GRGCYC 3 cut(s) 243, 468, 500
Fsp4HI GCNGC 6 cut(s) 315, 367, 402, 518, 674, 881
FspBI CTAG 2 cut(s) 116, 179
GlaI GCGC 1 cut(s) 400
GluI GCNGC 6 cut(s) 315, 367, 402, 518, 674, 881
GsuI CTGGAG 2 cut(s) 457, 488
HaeIII GGCC 2 cut(s) 241, 466
HapII CCGG 1 cut(s) 468
HgaI GACGC 1 cut(s) 463
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 455
Hin1II CATG 6 cut(s) 149, 361, 586, 887, 893, 944
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 4 cut(s) 192, 611, 756, 910
HpaII CCGG 1 cut(s) 468
HphI GGTGA 3 cut(s) 119, 742, 889
Hpy166II GTNNAC 3 cut(s) 264, 442, 714
Hpy188I TCNGA 4 cut(s) 393, 599, 630, 774
Hpy188III TCNNGA 9 cut(s) 179, 185, 304, 474, 480, 568, 703, 941, 956
Hpy8I GTNNAC 3 cut(s) 264, 442, 714
Hpy99I CGWCG 3 cut(s) 265, 344, 457
HpyAV CCTTC 3 cut(s) 368, 721, 953
HpyCH4III ACNGT 2 cut(s) 431, 868
HpyCH4IV ACGT 3 cut(s) 35, 282, 633
HpyCH4V TGCA 4 cut(s) 206, 212, 850, 880
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 98, 285, 463, 514
HpyF3I CTNAG 2 cut(s) 494, 836
HpySE526I ACGT 3 cut(s) 35, 282, 633
Hsp92I GRCGYC 1 cut(s) 455
Hsp92II CATG 6 cut(s) 149, 361, 586, 887, 893, 944
HspAI GCGC 1 cut(s) 399
Kzo9I GATC 5 cut(s) 175, 181, 187, 476, 625
LmnI GCTCC 5 cut(s) 203, 476, 513, 721, 751
Lsp1109I GCAGC 2 cut(s) 326, 892
LweI GCATC 2 cut(s) 837, 867
MabI ACCWGGT 1 cut(s) 949
MaeI CTAG 2 cut(s) 116, 179
MaeII ACGT 3 cut(s) 35, 282, 633
MalI GATC 5 cut(s) 177, 183, 189, 478, 627
MboI GATC 5 cut(s) 175, 181, 187, 476, 625
MboII GAAGA 8 cut(s) 60, 125, 606, 703, 835, 883, 886, 956
MflI RGATCY 3 cut(s) 175, 181, 625
MhlI GDGCHC 3 cut(s) 243, 468, 500
MluCI AATT 2 cut(s) 563, 768
MlyI GAGTC 4 cut(s) 201, 620, 765, 919
MroXI GAANNNNTTC 2 cut(s) 635, 698
MslI CAYNNNNRTG 2 cut(s) 587, 888
MspA1I CMGCKG 1 cut(s) 916
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 468, 951
MvaI CCWGG 1 cut(s) 951
MvnI CGCG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 89, 98, 285, 463, 514
NciI CCSGG 1 cut(s) 468
NdeII GATC 5 cut(s) 175, 181, 187, 476, 625
NlaIII CATG 6 cut(s) 149, 361, 586, 887, 893, 944
NlaIV GGNNCC 6 cut(s) 199, 241, 379, 466, 472, 672
NmeAIII GCCGAG 1 cut(s) 515
PagI TCATGA 1 cut(s) 940
PaqCI CACCTGC 1 cut(s) 820
PcsI WCGNNNNNNNCGW 1 cut(s) 614
PdmI GAANNNNTTC 2 cut(s) 635, 698
PflFI GACNNNGTC 1 cut(s) 610
PkrI GCNGC 6 cut(s) 316, 368, 403, 519, 675, 882
PleI GAGTC 4 cut(s) 200, 619, 764, 918
PpsI GAGTC 4 cut(s) 200, 619, 764, 918
Psp1406I AACGTT 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 949
PspGI CCWGG 1 cut(s) 949
PspN4I GGNNCC 6 cut(s) 199, 241, 379, 466, 472, 672
PspOMI GGGCCC 2 cut(s) 239, 464
PspPI GGNCC 5 cut(s) 239, 240, 464, 465, 705
PstI CTGCAG 1 cut(s) 208
PstNI CAGNNNCTG 1 cut(s) 835
PsuI RGATCY 3 cut(s) 175, 181, 625
PsyI GACNNNGTC 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 916
RseI CAYNNNNRTG 2 cut(s) 587, 888
SalI GTCGAC 1 cut(s) 262
SatI GCNGC 6 cut(s) 315, 367, 402, 518, 674, 881
Sau3AI GATC 5 cut(s) 175, 181, 187, 476, 625
Sau96I GGNCC 5 cut(s) 239, 240, 464, 465, 705
SchI GAGTC 4 cut(s) 201, 620, 765, 919
ScrFI CCNGG 2 cut(s) 468, 951
SduI GDGCHC 3 cut(s) 243, 468, 500
SexAI ACCWGGT 1 cut(s) 949
SfaNI GCATC 2 cut(s) 837, 867
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 705
SmiMI CAYNNNNRTG 2 cut(s) 587, 888
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 563, 768
SspI AATATT 1 cut(s) 61
SspMI CTAG 2 cut(s) 116, 179
StyD4I CCNGG 2 cut(s) 466, 949
TaaI ACNGT 2 cut(s) 431, 868
TaiI ACGT 3 cut(s) 38, 285, 636
TaqI TCGA 8 cut(s) 190, 263, 339, 384, 569, 617, 639, 689
TasI AATT 2 cut(s) 563, 768
TauI GCSGC 4 cut(s) 369, 404, 520, 676
TscAI CASTG 5 cut(s) 103, 162, 208, 223, 873
TseI GCWGC 2 cut(s) 314, 880
TspDTI ATGAA 3 cut(s) 39, 346, 957
TspGWI ACGGA 2 cut(s) 519, 623
TspRI CASTG 5 cut(s) 103, 162, 208, 223, 873
Tth111I GACNNNGTC 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 705
XapI RAATTY 2 cut(s) 563, 768
XbaI TCTAGA 1 cut(s) 178
XcmI CCANNNNNNNNNTGG 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 263
XmnI GAANNNNTTC 2 cut(s) 635, 698
XspI CTAG 2 cut(s) 116, 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.