FvH4_3g00510

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003727
Physical Location & Seq
Reverse (-)
268710 .. 269353
644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00510.t1

Sequence Viewer

Length: 318 bp
ATGGCAGCCGCCTTGAGTTGGCTTACTGTCTTTCTGTACCCGAAAAAGGACTCGGGCCCTAAAACTCATGACGGCGAGCATGCCAATGTCTCCAAGATTGGGGTTGCTGGGGGATTGTCCTCCTCGGGACACAGTGCTGCAGGATTCCAGATGCCTCTTCACTATCCTCGGTACACGAAGGCGGACTACGAGAAGATGGAGGAGTGGAGGCTGGATCTGCTTCTCAAGCAATATGGCCTAGTTGCTGTCAGCAATGGAACTCTCGAGGAGAAGAGGGCTTATGCAATCGGAGCTTTCTTGTGGCCCGATCAGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.65

Weight (kDa)

6.9

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 55 - 102 7.2e-26 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 182
AclWI GGATC 1 cut(s) 222
AfaI GTAC 2 cut(s) 38, 173
AfiI CCNNNNNNNGG 3 cut(s) 18, 46, 99
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 1 cut(s) 222
Ama87I CYCGRG 3 cut(s) 52, 124, 263
AoxI GGCC 3 cut(s) 55, 235, 302
ApaI GGGCCC 1 cut(s) 59
ApeKI GCWGC 2 cut(s) 5, 137
AspS9I GGNCC 3 cut(s) 55, 56, 303
AvaI CYCGRG 3 cut(s) 52, 124, 263
BaeGI GKGCMC 1 cut(s) 59
BanII GRGCYC 1 cut(s) 59
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbvI GCAGC 2 cut(s) 17, 124
BccI CCATC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 94
BfaI CTAG 1 cut(s) 239
BfmI CTRYAG 1 cut(s) 138
BisI GCNGC 3 cut(s) 6, 9, 138
BlsI GCNGC 3 cut(s) 7, 10, 139
BmeT110I CYCGRG 3 cut(s) 52, 124, 263
BmgT120I GGNCC 3 cut(s) 55, 56, 303
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 1 cut(s) 141
BpuEI CTTGAG 2 cut(s) 34, 209
BsaJI CCNNGG 2 cut(s) 123, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 46, 99
Bse3DI GCAATG 1 cut(s) 259
BseDI CCNNGG 2 cut(s) 123, 167
BseLI CCNNNNNNNGG 3 cut(s) 18, 46, 99
BseMI GCAATG 1 cut(s) 259
BseRI GAGGAG 3 cut(s) 112, 215, 281
BseSI GKGCMC 1 cut(s) 59
BseXI GCAGC 2 cut(s) 17, 124
BseYI CCCAGC 1 cut(s) 107
BshFI GGCC 3 cut(s) 57, 237, 304
BsiHKCI CYCGRG 3 cut(s) 52, 124, 263
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 18, 46, 99
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 3 cut(s) 57, 237, 304
BsoBI CYCGRG 3 cut(s) 52, 124, 263
Bsp120I GGGCCC 1 cut(s) 55
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 214, 307
BspACI CCGC 2 cut(s) 9, 182
BspANI GGCC 3 cut(s) 57, 237, 304
BspHI TCATGA 1 cut(s) 67
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 142
BspPI GGATC 1 cut(s) 222
BsrDI GCAATG 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 123, 167
BssMI GATC 2 cut(s) 214, 307
Bst4CI ACNGT 2 cut(s) 28, 134
Bst6I CTCTTC 2 cut(s) 162, 266
BstC8I GCNNGC 2 cut(s) 77, 81
BstKTI GATC 2 cut(s) 217, 310
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 2 cut(s) 214, 307
BstMWI GCNNNNNNNGC 3 cut(s) 217, 226, 290
BstNSI RCATGY 1 cut(s) 83
BstSFI CTRYAG 1 cut(s) 138
BstSLI GKGCMC 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 17, 124
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BsuRI GGCC 3 cut(s) 57, 237, 304
BtsIMutI CAGTG 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 77, 81
CciI TCATGA 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 55, 56, 303
Csp6I GTAC 2 cut(s) 37, 172
CviAII CATG 2 cut(s) 68, 80
CviJI RGCY 8 cut(s) 8, 22, 57, 211, 237, 278, 293, 304
CviKI_1 RGCY 8 cut(s) 8, 22, 57, 211, 237, 278, 293, 304
CviQI GTAC 2 cut(s) 37, 172
DpnI GATC 2 cut(s) 216, 309
DpnII GATC 2 cut(s) 214, 307
Eam1104I CTCTTC 2 cut(s) 162, 266
EarI CTCTTC 2 cut(s) 162, 266
EciI GGCGGA 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 59
Eco88I CYCGRG 3 cut(s) 52, 124, 263
EcoO109I RGGNCCY 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 2 cut(s) 71, 83
FaiI YATR 4 cut(s) 69, 81, 234, 282
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 67, 79
Fnu4HI GCNGC 3 cut(s) 6, 9, 138
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 3 cut(s) 6, 9, 138
FspBI CTAG 1 cut(s) 239
GluI GCNGC 3 cut(s) 6, 9, 138
GsaI CCCAGC 1 cut(s) 111
HaeIII GGCC 3 cut(s) 57, 237, 304
Hin1II CATG 2 cut(s) 71, 83
HinfI GANTC 2 cut(s) 50, 144
Hpy166II GTNNAC 1 cut(s) 174
Hpy188I TCNGA 1 cut(s) 290
Hpy188III TCNNGA 4 cut(s) 68, 126, 148, 263
Hpy8I GTNNAC 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 28, 134
HpyCH4V TGCA 2 cut(s) 140, 284
HpyF10VI GCNNNNNNNGC 3 cut(s) 217, 226, 290
Hsp92II CATG 2 cut(s) 71, 83
Kzo9I GATC 2 cut(s) 214, 307
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 4 cut(s) 93, 126, 161, 197
Lsp1109I GCAGC 2 cut(s) 17, 124
LweI GCATC 1 cut(s) 141
MaeI CTAG 1 cut(s) 239
MalI GATC 2 cut(s) 216, 309
MboI GATC 2 cut(s) 214, 307
MboII GAAGA 3 cut(s) 149, 205, 283
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 59
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 8 cut(s) 130, 133, 165, 177, 193, 201, 259, 267
MseI TTAA 1 cut(s) 316
MslI CAYNNNNRTG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 217, 226, 290
NdeII GATC 2 cut(s) 214, 307
NlaIII CATG 2 cut(s) 71, 83
NlaIV GGNNCC 1 cut(s) 57
NspI RCATGY 1 cut(s) 83
PaeI GCATGC 1 cut(s) 83
PaeR7I CTCGAG 1 cut(s) 263
PagI TCATGA 1 cut(s) 67
PfeI GAWTC 1 cut(s) 144
PkrI GCNGC 3 cut(s) 7, 10, 139
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PspFI CCCAGC 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 57
PspOMI GGGCCC 1 cut(s) 55
PspPI GGNCC 3 cut(s) 55, 56, 303
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 2 cut(s) 38, 173
RsaNI GTAC 2 cut(s) 37, 172
RseI CAYNNNNRTG 1 cut(s) 84
SaqAI TTAA 1 cut(s) 316
SatI GCNGC 3 cut(s) 6, 9, 138
Sau3AI GATC 2 cut(s) 214, 307
Sau96I GGNCC 3 cut(s) 55, 56, 303
SchI GAGTC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 59
SetI ASST 1 cut(s) 295
SfaNI GCATC 1 cut(s) 141
SfcI CTRYAG 1 cut(s) 138
Sfr274I CTCGAG 1 cut(s) 263
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 3 cut(s) 13, 224, 263
SmoI CTYRAG 3 cut(s) 13, 224, 263
SphI GCATGC 1 cut(s) 83
SsiI CCGC 2 cut(s) 9, 182
SspMI CTAG 1 cut(s) 239
TaaI ACNGT 2 cut(s) 28, 134
TaqI TCGA 1 cut(s) 264
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 144
Tru1I TTAA 1 cut(s) 316
Tru9I TTAA 1 cut(s) 316
TscAI CASTG 1 cut(s) 139
TseI GCWGC 2 cut(s) 5, 137
TspRI CASTG 1 cut(s) 139
XceI RCATGY 1 cut(s) 83
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.