Rroxscaffold_4G00288620

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003727
Physical Location & Seq
Forward (+)
9331586 .. 9332374
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00288620.1

Sequence Viewer

Length: 387 bp
ATGGAAGAGGTAGAAGAGGCAGATGAGCCGTTGGCGTTCTGTGAGATGGACACCTTAACACAAAAACCAGAAGCTACCAACTGCTGCTTCAAAGAGATCATGGAGAGCCGAAAGATGAATGCAAGTAACTTCCAGATGCCCCTTCACTACCCAAGGTACAGCAGAAGGGACTACGAGGACATGCCTGAGTGGAAGCTCAACCATCTTCTCGCCCAGTATGGGTTGTCTGCGCACGGCGACTTGGCTTACAAGAGAGACTTTGCCATGGGTGCCTTCCTCTGGCCTGATCAACATCGCCATGAACCAAACCCTTGTAATAATTCATACCAGAATAACACCATCAAGGATGTTTCCAGTTCTCTTATTAGAGACAAAAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.08

Weight (kDa)

5.32

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 50 - 95 1.9e-26 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
Acc16I TGCGCA 1 cut(s) 231
AccB1I GGYRCC 1 cut(s) 269
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 2 cut(s) 219, 279
AgsI TTSAA 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 71, 103
AluBI AGCT 2 cut(s) 74, 196
AluI AGCT 2 cut(s) 74, 196
Alw26I GTCTC 2 cut(s) 249, 363
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 232
BanI GGYRCC 1 cut(s) 269
BbvI GCAGC 1 cut(s) 71
BccI CCATC 3 cut(s) 40, 210, 347
BceAI ACGGC 2 cut(s) 13, 250
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 249, 363
BisI GCNGC 1 cut(s) 85
BlsI GCNGC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 271
BmrI ACTGGG 1 cut(s) 208
BmsI GCATC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 208
BsaBI GATNNNNATC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 152, 264
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 279
Bse1I ACTGG 2 cut(s) 214, 354
Bse8I GATNNNNATC 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 152, 264
BseGI GGATG 1 cut(s) 352
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 219, 279
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 2 cut(s) 214, 354
BseXI GCAGC 1 cut(s) 71
BshFI GGCC 1 cut(s) 283
BshNI GGYRCC 1 cut(s) 269
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 2 cut(s) 219, 279
BsmAI GTCTC 2 cut(s) 249, 363
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 124
BsnI GGCC 1 cut(s) 283
Bsp143I GATC 2 cut(s) 96, 286
Bsp19I CCATGG 1 cut(s) 264
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 271
BspT107I GGYRCC 1 cut(s) 269
BsrI ACTGG 2 cut(s) 214, 354
BssECI CCNNGG 2 cut(s) 152, 264
BssMI GATC 2 cut(s) 96, 286
BssT1I CCWWGG 2 cut(s) 152, 264
Bst6I CTCTTC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 352
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 2 cut(s) 99, 289
BstMAI GTCTC 2 cut(s) 249, 363
BstMBI GATC 2 cut(s) 96, 286
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 71
BsuRI GGCC 1 cut(s) 283
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 1 cut(s) 352
CfoI GCGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 157
CviAII CATG 5 cut(s) 100, 181, 265, 299, 382
CviJI RGCY 6 cut(s) 28, 74, 108, 196, 245, 283
CviKI_1 RGCY 6 cut(s) 28, 74, 108, 196, 245, 283
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 1 cut(s) 186
DpnI GATC 2 cut(s) 98, 288
DpnII GATC 2 cut(s) 96, 286
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 2 cut(s) 152, 264
EcoT14I CCWWGG 2 cut(s) 152, 264
ErhI CCWWGG 2 cut(s) 152, 264
FaeI CATG 5 cut(s) 103, 184, 268, 302, 385
FaiI YATR 7 cut(s) 101, 182, 219, 266, 300, 325, 383
FalI AAGNNNNNCTT 2 cut(s) 242, 274
FaqI GGGAC 1 cut(s) 182
FatI CATG 5 cut(s) 99, 180, 264, 298, 381
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 85
FokI GGATG 1 cut(s) 359
Fsp4HI GCNGC 1 cut(s) 85
FspI TGCGCA 1 cut(s) 231
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 85
HaeIII GGCC 1 cut(s) 283
HhaI GCGC 1 cut(s) 232
Hin1II CATG 5 cut(s) 103, 184, 268, 302, 385
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 133
HpyAV CCTTC 3 cut(s) 152, 159, 283
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 186
Hsp92II CATG 5 cut(s) 103, 184, 268, 302, 385
HspAI GCGC 1 cut(s) 230
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 2 cut(s) 96, 286
LpnPI CCDG 8 cut(s) 81, 146, 198, 227, 265, 297, 341, 367
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 126
MaeIII GTNAC 1 cut(s) 125
MalI GATC 2 cut(s) 98, 288
MboI GATC 2 cut(s) 96, 286
MboII GAAGA 3 cut(s) 17, 26, 197
MluCI AATT 1 cut(s) 319
MnlI CCTC 3 cut(s) 10, 169, 287
MseI TTAA 1 cut(s) 56
MslI CAYNNNNRTG 1 cut(s) 297
Mva1269I GAATGC 1 cut(s) 124
MwoI GCNNNNNNNGC 1 cut(s) 269
NcoI CCATGG 1 cut(s) 264
NdeII GATC 2 cut(s) 96, 286
NlaIII CATG 5 cut(s) 103, 184, 268, 302, 385
NlaIV GGNNCC 1 cut(s) 271
NsbI TGCGCA 1 cut(s) 231
NspI RCATGY 1 cut(s) 184
PctI GAATGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 271
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 297
SaqAI TTAA 1 cut(s) 56
SatI GCNGC 1 cut(s) 85
Sau3AI GATC 2 cut(s) 96, 286
SetI ASST 6 cut(s) 12, 56, 76, 158, 198, 381
SfaNI GCATC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 1 cut(s) 319
StyI CCWWGG 2 cut(s) 152, 264
TasI AATT 1 cut(s) 319
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TseI GCWGC 1 cut(s) 84
TspDTI ATGAA 3 cut(s) 131, 312, 315
XceI RCATGY 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.