FvH4_7g23090

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003727
Physical Location & Seq
Reverse (-)
18099250 .. 18099597
348 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23090.t1

Sequence Viewer

Length: 285 bp
ATGGAGAGCCGAAAGATGAATGCAAGTAACTTCCAGATGCCCCTTCACTACCCAAGGTACAGCAGAAAGGACTACGAGGACATGCCTGAGTGGAAGCTCGACCGTCTTCTCGCACAGTATGGTTTGTCTGTGCACTGCGACTTGGCCTGCAAGAGAGACTTTGCCATGGGTGCCTTCCTCTGGCCTGATCGTCATCGCCACGAGCCTAACACTTGTAATAATTCATACCAGAATGATACCATCAAGGATGTTTCCAGCTCTCTTAGAGACAAAAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

11.23

Weight (kDa)

8.48

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 17 - 62 1.6e-27 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccB1I GGYRCC 1 cut(s) 170
AfaI GTAC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 180
AluBI AGCT 2 cut(s) 97, 258
AluI AGCT 2 cut(s) 97, 258
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 150, 261
Alw44I GTGCAC 1 cut(s) 131
AoxI GGCC 2 cut(s) 144, 182
ApaLI GTGCAC 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 170
BauI CACGAG 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 1 cut(s) 248
BcoDI GTCTC 2 cut(s) 150, 261
BmiI GGNNCC 1 cut(s) 172
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 53, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 53, 165
BseGI GGATG 1 cut(s) 253
BseJI GATNNNNATC 1 cut(s) 192
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 78
BseSI GKGCMC 1 cut(s) 135
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 146, 184
BshNI GGYRCC 1 cut(s) 170
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 150, 261
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 2 cut(s) 146, 184
Bsp1286I GDGCHC 1 cut(s) 135
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 165
BspANI GGCC 2 cut(s) 146, 184
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 53, 165
BssMI GATC 1 cut(s) 187
BssSI CACGAG 1 cut(s) 200
BssT1I CCWWGG 2 cut(s) 53, 165
Bst2BI CACGAG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 104, 117
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 2 cut(s) 87, 263
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 253
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 2 cut(s) 150, 261
BstMBI GATC 1 cut(s) 187
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 85
BstSLI GKGCMC 1 cut(s) 135
BstV2I GAAGAC 1 cut(s) 98
BsuRI GGCC 2 cut(s) 146, 184
BtgI CCRYGG 1 cut(s) 165
BtgZI GCGATG 1 cut(s) 179
BtsCI GGATG 1 cut(s) 253
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 58
CviAII CATG 3 cut(s) 82, 166, 280
CviJI RGCY 6 cut(s) 9, 97, 146, 184, 205, 258
CviKI_1 RGCY 6 cut(s) 9, 97, 146, 184, 205, 258
CviQI GTAC 1 cut(s) 58
DdeI CTNAG 2 cut(s) 87, 263
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
Eco130I CCWWGG 2 cut(s) 53, 165
EcoT14I CCWWGG 2 cut(s) 53, 165
ErhI CCWWGG 2 cut(s) 53, 165
FaeI CATG 3 cut(s) 85, 169, 283
FaiI YATR 5 cut(s) 83, 120, 167, 226, 281
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 3 cut(s) 81, 165, 279
FokI GGATG 1 cut(s) 260
HaeIII GGCC 2 cut(s) 146, 184
Hin1II CATG 3 cut(s) 85, 169, 283
Hpy166II GTNNAC 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 53, 184
HpyCH4III ACNGT 2 cut(s) 104, 117
HpyCH4V TGCA 3 cut(s) 23, 133, 150
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 2 cut(s) 87, 263
Hsp92II CATG 3 cut(s) 85, 169, 283
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 47, 99, 160, 166, 198, 242, 268
LweI GCATC 1 cut(s) 27
MaeIII GTNAC 1 cut(s) 26
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 1 cut(s) 98
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 220
MnlI CCTC 2 cut(s) 70, 188
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 170
NcoI CCATGG 1 cut(s) 165
NdeII GATC 1 cut(s) 187
NlaIII CATG 3 cut(s) 85, 169, 283
NlaIV GGNNCC 1 cut(s) 172
NspI RCATGY 1 cut(s) 85
PctI GAATGC 1 cut(s) 25
PspN4I GGNNCC 1 cut(s) 172
RsaI GTAC 1 cut(s) 59
RsaNI GTAC 1 cut(s) 58
Sau3AI GATC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 135
SetI ASST 4 cut(s) 59, 99, 260, 279
SfaNI GCATC 1 cut(s) 27
Sse9I AATT 1 cut(s) 220
StyI CCWWGG 2 cut(s) 53, 165
TaaI ACNGT 2 cut(s) 104, 117
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 220
TscAI CASTG 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 32, 213
TspRI CASTG 1 cut(s) 140
VneI GTGCAC 1 cut(s) 131
XceI RCATGY 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.