FvH4_7g23130

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0003727
Physical Location & Seq
Reverse (-)
18114187 .. 18114618
432 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23130.t1

Sequence Viewer

Length: 270 bp
ATGGAAAGCAGGAAGGTGCATAGCGTGAGCAACTTCCAGATGCCCTTGCACTACCCTAGGTACACCAGAAAGGACTACGAGGACATGCCGGAGTGGAAGCTCGACCGCCTTCTTGCCGAGTATGGGTTGCCGGCTCACGGTGACTTGGCTTCCAAGAGAGACTTTGCAATGGGTGCCTTTCTCTGGCCTGATAATTGTCGCAATGGTCACAATCCAAACAACTGTAATTCATACAATATCGCTAGCATTAAGGCGGATGGTTCCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.25

Weight (kDa)

6.89

Isoelectric Point (pI)

36.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7722 PF24847 18 - 63 9.7e-29 Domain of unknown function (DUF7722)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AciI CCGC 2 cut(s) 106, 254
AfaI GTAC 1 cut(s) 62
AfiI CCNNNNNNNGG 3 cut(s) 123, 137, 183
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 1 cut(s) 185
AspA2I CCTAGG 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 242
AvrII CCTAGG 1 cut(s) 56
BanI GGYRCC 1 cut(s) 173
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 2 cut(s) 57, 243
BlnI CCTAGG 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 175, 262
BmsI GCATC 1 cut(s) 30
BmtI GCTAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 3 cut(s) 123, 137, 183
Bse118I RCCGGY 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 2 cut(s) 174, 208
BseDI CCNNGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BseMI GCAATG 2 cut(s) 174, 208
BseNI ACTGG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 1 cut(s) 187
BshNI GGYRCC 1 cut(s) 173
BsiEI CGRYCG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 89, 131
BslI CCNNNNNNNGG 3 cut(s) 123, 137, 183
BsmAI GTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 187
BspACI CCGC 2 cut(s) 106, 254
BspANI GGCC 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 175, 262
BspOI GCTAGC 1 cut(s) 246
BspT107I GGYRCC 1 cut(s) 173
BsrDI GCAATG 2 cut(s) 174, 208
BsrFI RCCGGY 1 cut(s) 130
BsrI ACTGG 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 140, 224
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 2 cut(s) 132, 244
BstF5I GGATG 1 cut(s) 262
BstMAI GTCTC 1 cut(s) 153
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 88
BsuRI GGCC 1 cut(s) 187
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 132, 244
Cfr10I RCCGGY 1 cut(s) 130
Csp6I GTAC 1 cut(s) 61
CviAII CATG 1 cut(s) 85
CviJI RGCY 4 cut(s) 100, 134, 149, 187
CviKI_1 RGCY 4 cut(s) 100, 134, 149, 187
CviQI GTAC 1 cut(s) 61
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaeI CATG 1 cut(s) 88
FaiI YATR 4 cut(s) 21, 86, 123, 232
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FatI CATG 1 cut(s) 84
FspBI CTAG 2 cut(s) 57, 243
HaeIII GGCC 1 cut(s) 187
HapII CCGG 2 cut(s) 89, 131
Hin1II CATG 1 cut(s) 88
HpaII CCGG 2 cut(s) 89, 131
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 7, 119
HpyCH4III ACNGT 2 cut(s) 140, 224
HpyCH4V TGCA 3 cut(s) 19, 49, 167
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 88
KroI GCCGGC 1 cut(s) 130
KroNI GCCGGC 1 cut(s) 132
LpnPI CCDG 6 cut(s) 50, 79, 102, 144, 169, 201
LweI GCATC 1 cut(s) 30
MaeI CTAG 2 cut(s) 57, 243
MaeIII GTNAC 2 cut(s) 140, 206
MluCI AATT 2 cut(s) 193, 226
MnlI CCTC 1 cut(s) 73
MroNI GCCGGC 1 cut(s) 130
MseI TTAA 1 cut(s) 249
MspI CCGG 2 cut(s) 89, 131
MwoI GCNNNNNNNGC 1 cut(s) 173
NaeI GCCGGC 1 cut(s) 132
NgoMIV GCCGGC 1 cut(s) 130
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 175, 262
NmeAIII GCCGAG 1 cut(s) 142
NmuCI GTSAC 2 cut(s) 140, 206
NspI RCATGY 1 cut(s) 88
PdiI GCCGGC 1 cut(s) 132
PspN4I GGNNCC 2 cut(s) 175, 262
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SaqAI TTAA 1 cut(s) 249
SetI ASST 3 cut(s) 18, 62, 102
SfaNI GCATC 1 cut(s) 30
Sse9I AATT 2 cut(s) 193, 226
SsiI CCGC 2 cut(s) 106, 254
SspMI CTAG 2 cut(s) 57, 243
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 140, 224
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 193, 226
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseFI GTSAC 2 cut(s) 140, 206
Tsp45I GTSAC 2 cut(s) 140, 206
TspDTI ATGAA 1 cut(s) 219
XceI RCATGY 1 cut(s) 88
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 2 cut(s) 57, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.